Mir193a (microRNA 193a) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Mir193a (microRNA 193a) Mus musculus
Analyze
Symbol: Mir193a
Name: microRNA 193a
RGD ID: 1608303
MGI Page MGI
Description: Involved in cellular response to amino acid stimulus; cellular response to lipopolysaccharide; and male sex differentiation. Is expressed in several structures, including lung and tooth. Used to study focal segmental glomerulosclerosis. Orthologous to human MIR193A (microRNA 193a).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-193a; Mir193; Mirn; Mirn193; mmu-mir-1; mmu-mir-193; mmu-mir-193a
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391179,602,795 - 79,602,860 (+)NCBIGRCm39mm39
GRCm381179,711,969 - 79,712,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1179,711,969 - 79,712,034 (+)EnsemblGRCm38mm10GRCm38
MGSCv371179,525,471 - 79,525,536 (+)NCBIGRCm37mm9NCBIm37
Celera1189,344,581 - 89,344,646 (+)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12554859   PMID:12919684   PMID:16369549   PMID:16381832   PMID:17369397   PMID:17604727   PMID:18452032   PMID:19559694   PMID:20215419   PMID:20413612   PMID:20548288   PMID:20589883  
PMID:21037258   PMID:21247879   PMID:21267068   PMID:21447044   PMID:21643937   PMID:21822254   PMID:22144232   PMID:22753148   PMID:23026916   PMID:23946534   PMID:24336674   PMID:25270065  
PMID:25931122   PMID:26120970   PMID:29467020   PMID:30653268   PMID:30744607   PMID:30945448   PMID:31665716   PMID:31924304   PMID:32369495  


Genomics

Comparative Map Data
Mir193a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391179,602,795 - 79,602,860 (+)NCBIGRCm39mm39
GRCm381179,711,969 - 79,712,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1179,711,969 - 79,712,034 (+)EnsemblGRCm38mm10GRCm38
MGSCv371179,525,471 - 79,525,536 (+)NCBIGRCm37mm9NCBIm37
Celera1189,344,581 - 89,344,646 (+)NCBICelera
Cytogenetic Map11B5NCBI
MIR193A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1731,559,996 - 31,560,083 (+)EnsemblGRCh38hg38GRCh38
GRCh381731,559,996 - 31,560,083 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371729,887,015 - 29,887,102 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361726,911,127 - 26,911,214 (+)NCBINCBI36hg18NCBI36
Celera1726,806,777 - 26,806,864 (+)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1726,097,427 - 26,097,514 (+)NCBIHuRef
CHM1_11729,949,637 - 29,949,724 (+)NCBICHM1_1
Mir193a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21064,672,343 - 64,672,454 (-)NCBI
Rnor_6.0 Ensembl1067,065,885 - 67,065,996 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01067,065,885 - 67,065,996 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01064,583,957 - 64,584,068 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1063,641,174 - 63,641,285 (-)NCBICelera
Cytogenetic Map10q25NCBI
MIR193A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl941,316,474 - 41,316,542 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1941,316,481 - 41,316,536 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR193A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1243,336,969 - 43,337,048 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11243,336,969 - 43,337,048 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21245,165,038 - 45,165,117 (-)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117768304780855532Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Trp73mmu-miR-193a-5pOncomiRDBexternal_infoNANA21293058
Srsf2mmu-miR-193a-3pOncomiRDBexternal_infoNANA22117060
Kitmmu-miR-193a-3pOncomiRDBexternal_infoNANA21399664

Predicted Targets
Summary Value
Count of predictions:33899
Count of gene targets:13662
Count of transcripts:25105
Interacting mature miRNAs:mmu-miR-193a-3p, mmu-miR-193a-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Microtar, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083461
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1179,711,969 - 79,712,034 (+)Ensembl
RefSeq Acc Id: NR_029579
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391179,602,795 - 79,602,860 (+)NCBI
GRCm381179,711,969 - 79,712,034 (+)ENTREZGENE
MGSCv371179,525,471 - 79,525,536 (+)RGD
Celera1189,344,581 - 89,344,646 (+)RGD
cM Map11 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676857 AgrOrtholog
Ensembl Genes ENSMUSG00000065395 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083461 ENTREZGENE
MGD MGI:2676857 ENTREZGENE
miRBase MI0000235 ENTREZGENE
NCBI Gene 387188 ENTREZGENE
PhenoGen Mir193a PhenoGen
RNAcentral URS00004DE9D7 RNACentral
  URS00005DBAF3 RNACentral
  URS000075B5F0 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-05-27 Mir193a  microRNA 193a  Mir193  microRNA 193  Symbol and/or name change 5135510 APPROVED