TMOD3 (tropomodulin 3) - Rat Genome Database

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Gene: TMOD3 (tropomodulin 3) Canis lupus familiaris
Analyze
Symbol: TMOD3 (Ensembl: TMOD2)
Name: tropomodulin 3
RGD ID: 12113431
Description: ENCODES a protein that exhibits tropomyosin binding (inferred); INVOLVED IN actin cytoskeleton organization (inferred); actin filament organization (inferred); erythrocyte development (inferred); FOUND IN cytoskeleton (inferred); myofibril (inferred); striated muscle thin filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tropomodulin-3
RGD Orthologs
Human
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13017,509,533 - 17,594,355 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3017,455,987 - 17,592,580 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3017,436,024 - 17,520,969 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03017,655,654 - 17,740,767 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3017,588,331 - 17,740,756 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13017,577,408 - 17,662,179 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03017,695,191 - 17,780,148 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03017,801,824 - 17,886,562 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TMOD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13017,509,533 - 17,594,355 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3017,455,987 - 17,592,580 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3017,436,024 - 17,520,969 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03017,655,654 - 17,740,767 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3017,588,331 - 17,740,756 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13017,577,408 - 17,662,179 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03017,695,191 - 17,780,148 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03017,801,824 - 17,886,562 (+)NCBIUU_Cfam_GSD_1.0
TMOD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381551,919,141 - 51,947,295 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1551,829,628 - 51,947,295 (+)EnsemblGRCh38hg38GRCh38
GRCh371552,121,825 - 52,204,335 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361549,909,181 - 49,989,142 (+)NCBINCBI36Build 36hg18NCBI36
Build 341549,909,180 - 49,989,136NCBI
Celera1529,015,228 - 29,097,738 (+)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1528,952,327 - 29,034,886 (+)NCBIHuRef
CHM1_11552,239,893 - 52,322,383 (+)NCBICHM1_1
T2T-CHM13v2.01549,731,817 - 49,754,929 (+)NCBIT2T-CHM13v2.0
Tmod3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,732,042 - 2,765,587 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,732,042 - 2,783,966 (-)NCBIChiLan1.0ChiLan1.0
TMOD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21641,066,524 - 41,148,773 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11545,247,031 - 45,364,495 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01530,771,245 - 30,853,473 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11549,100,716 - 49,182,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1549,100,716 - 49,182,218 (+)Ensemblpanpan1.1panPan2
Tmod3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864095,804,469 - 95,879,105 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647113,602,732 - 13,729,228 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647113,652,532 - 13,729,311 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMOD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12631,470,138 - 31,549,615 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2631,471,362 - 31,549,571 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048109,665,882 - 109,757,541 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmod3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247318,494,259 - 8,531,971 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247318,490,157 - 8,551,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMOD3
974 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845046347   ⟹   ENSCAFP00845036396
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3017,588,331 - 17,740,756 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845046462   ⟹   ENSCAFP00845036477
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3017,588,331 - 17,740,756 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845046578   ⟹   ENSCAFP00845036566
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3017,589,284 - 17,646,680 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845046660   ⟹   ENSCAFP00845036624
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3017,589,284 - 17,646,680 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845046738   ⟹   ENSCAFP00845036674
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3017,655,631 - 17,740,756 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845046792   ⟹   ENSCAFP00845036704
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3017,655,631 - 17,740,756 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845046859   ⟹   ENSCAFP00845036750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3017,655,631 - 17,740,756 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845046935   ⟹   ENSCAFP00845036819
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3017,655,631 - 17,739,987 (+)Ensembl
RefSeq Acc Id: XM_038442347   ⟹   XP_038298275
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03017,655,654 - 17,740,767 (+)NCBI
RefSeq Acc Id: XM_038442348   ⟹   XP_038298276
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03017,689,501 - 17,740,762 (+)NCBI
RefSeq Acc Id: XM_038461274   ⟹   XP_038317202
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3017,469,853 - 17,520,964 (+)NCBI
RefSeq Acc Id: XM_038516792   ⟹   XP_038372720
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13017,577,408 - 17,662,179 (+)NCBI
RefSeq Acc Id: XM_038516793   ⟹   XP_038372721
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13017,611,255 - 17,662,174 (+)NCBI
RefSeq Acc Id: XM_038580430   ⟹   XP_038436358
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03017,801,824 - 17,886,562 (+)NCBI
RefSeq Acc Id: XM_038580431   ⟹   XP_038436359
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03017,835,671 - 17,886,394 (+)NCBI
RefSeq Acc Id: XM_038644732   ⟹   XP_038500660
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03017,695,191 - 17,780,148 (+)NCBI
RefSeq Acc Id: XM_038644733   ⟹   XP_038500661
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03017,729,037 - 17,780,143 (+)NCBI
RefSeq Acc Id: XM_544679   ⟹   XP_544679
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13017,509,533 - 17,594,355 (+)NCBI
Dog10K_Boxer_Tasha3017,436,024 - 17,520,969 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_544679   ⟸   XM_544679
- Peptide Label: isoform X1
- UniProtKB: A0A8C0L2W1 (UniProtKB/TrEMBL),   A0A8I3S5X2 (UniProtKB/TrEMBL),   A0A8P0NH04 (UniProtKB/TrEMBL),   A0A8C0P784 (UniProtKB/TrEMBL),   A0A8I3S5Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038372720   ⟸   XM_038516792
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038372721   ⟸   XM_038516793
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038500660   ⟸   XM_038644732
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038500661   ⟸   XM_038644733
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038298275   ⟸   XM_038442347
- Peptide Label: isoform X1
- UniProtKB: A0A8C0L2W1 (UniProtKB/TrEMBL),   A0A8I3S5X2 (UniProtKB/TrEMBL),   A0A8P0NH04 (UniProtKB/TrEMBL),   A0A8C0P784 (UniProtKB/TrEMBL),   A0A8I3S5Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298276   ⟸   XM_038442348
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038317202   ⟸   XM_038461274
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038436358   ⟸   XM_038580430
- Peptide Label: isoform X1
- UniProtKB: A0A8C0L2W1 (UniProtKB/TrEMBL),   A0A8C0P784 (UniProtKB/TrEMBL),   A0A8I3S5X2 (UniProtKB/TrEMBL),   A0A8I3S5Z0 (UniProtKB/TrEMBL),   A0A8P0NH04 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436359   ⟸   XM_038580431
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845036566   ⟸   ENSCAFT00845046578
RefSeq Acc Id: ENSCAFP00845036704   ⟸   ENSCAFT00845046792
RefSeq Acc Id: ENSCAFP00845036477   ⟸   ENSCAFT00845046462
RefSeq Acc Id: ENSCAFP00845036624   ⟸   ENSCAFT00845046660
RefSeq Acc Id: ENSCAFP00845036396   ⟸   ENSCAFT00845046347
RefSeq Acc Id: ENSCAFP00845036674   ⟸   ENSCAFT00845046738
RefSeq Acc Id: ENSCAFP00845036750   ⟸   ENSCAFT00845046859
RefSeq Acc Id: ENSCAFP00845036819   ⟸   ENSCAFT00845046935


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015528 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030023159 UniProtKB/TrEMBL
  ENSCAFG00030023227 UniProtKB/TrEMBL
  ENSCAFG00040023481 UniProtKB/TrEMBL
  ENSCAFG00845026270 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000024709.5 UniProtKB/TrEMBL
  ENSCAFT00000075278.2 UniProtKB/TrEMBL
  ENSCAFT00000105654.1 UniProtKB/TrEMBL
  ENSCAFT00030042558.1 UniProtKB/TrEMBL
  ENSCAFT00030042783.1 UniProtKB/TrEMBL
  ENSCAFT00040043657.1 UniProtKB/TrEMBL
  ENSCAFT00040043831.1 UniProtKB/TrEMBL
  ENSCAFT00845046347.1 UniProtKB/TrEMBL
  ENSCAFT00845046660.1 UniProtKB/TrEMBL
  ENSCAFT00845046738 ENTREZGENE
  ENSCAFT00845046738.1 UniProtKB/TrEMBL
  ENSCAFT00845046792.1 UniProtKB/TrEMBL
  ENSCAFT00845046859.1 UniProtKB/TrEMBL
  ENSCAFT00845046935.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro LRR_dom_sf UniProtKB/TrEMBL
  TMOD UniProtKB/TrEMBL
NCBI Gene TMOD3 ENTREZGENE
PANTHER PTHR10901 UniProtKB/TrEMBL
  PTHR10901:SF15 UniProtKB/TrEMBL
  PTHR10901:SF18 UniProtKB/TrEMBL
Pfam Tropomodulin UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0A8C0L2W1 ENTREZGENE
  A0A8C0P784 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0P8Q9_CANLF UniProtKB/TrEMBL
  A0A8C0TNE8_CANLF UniProtKB/TrEMBL
  A0A8I3PST3_CANLF UniProtKB/TrEMBL
  A0A8I3PUE6_CANLF UniProtKB/TrEMBL
  A0A8I3PZ22_CANLF UniProtKB/TrEMBL
  A0A8I3S5X2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S5Z0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3SA09_CANLF UniProtKB/TrEMBL
  A0A8P0NH04 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47625 ENTREZGENE