Tmod3 (tropomodulin 3) - Rat Genome Database

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Gene: Tmod3 (tropomodulin 3) Heterocephalus glaber
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Symbol: Tmod3
Name: tropomodulin 3
RGD ID: 18913098
Description: ENCODES a protein that exhibits tropomyosin binding (inferred); INVOLVED IN actin filament organization (inferred); muscle contraction (inferred); myofibril assembly (inferred); FOUND IN cytoskeleton (inferred); myofibril (inferred); striated muscle thin filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tropomodulin-3
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247318,494,259 - 8,531,971 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247318,490,157 - 8,551,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tmod3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247318,494,259 - 8,531,971 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247318,490,157 - 8,551,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TMOD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381551,919,141 - 51,947,295 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1551,829,628 - 51,947,295 (+)EnsemblGRCh38hg38GRCh38
GRCh371552,121,825 - 52,204,335 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361549,909,181 - 49,989,142 (+)NCBINCBI36Build 36hg18NCBI36
Build 341549,909,180 - 49,989,136NCBI
Celera1529,015,228 - 29,097,738 (+)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1528,952,327 - 29,034,886 (+)NCBIHuRef
CHM1_11552,239,893 - 52,322,383 (+)NCBICHM1_1
T2T-CHM13v2.01549,731,817 - 49,754,929 (+)NCBIT2T-CHM13v2.0
Tmod3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,732,042 - 2,765,587 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,732,042 - 2,783,966 (-)NCBIChiLan1.0ChiLan1.0
TMOD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21641,066,524 - 41,148,773 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11545,247,031 - 45,364,495 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01530,771,245 - 30,853,473 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11549,100,716 - 49,182,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1549,100,716 - 49,182,218 (+)Ensemblpanpan1.1panPan2
TMOD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13017,509,533 - 17,594,355 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3017,455,987 - 17,592,580 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3017,436,024 - 17,520,969 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03017,655,654 - 17,740,767 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3017,588,331 - 17,740,756 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13017,577,408 - 17,662,179 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03017,695,191 - 17,780,148 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03017,801,824 - 17,886,562 (+)NCBIUU_Cfam_GSD_1.0
Tmod3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864095,804,469 - 95,879,105 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647113,602,732 - 13,729,228 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647113,652,532 - 13,729,311 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMOD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12631,470,138 - 31,549,615 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2631,471,362 - 31,549,571 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048109,665,882 - 109,757,541 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000023879   ⟹   ENSHGLP00000023661
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247318,494,259 - 8,531,971 (-)Ensembl
RefSeq Acc Id: XM_004835399   ⟹   XP_004835456
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247318,490,157 - 8,551,867 (-)NCBI
RefSeq Acc Id: XM_021261129   ⟹   XP_021116788
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247318,490,157 - 8,532,654 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004835456 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116788 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023661
  ENSHGLP00100019807
GenBank Protein JAN97276 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004835456   ⟸   XM_004835399
- UniProtKB: A0A0P6K1T5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116788   ⟸   XM_021261129
- UniProtKB: A0A0P6K1T5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000023661   ⟸   ENSHGLT00000023879


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016880 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100014601 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000023879 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100020019 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro LRR_dom_sf UniProtKB/TrEMBL
  TMOD UniProtKB/TrEMBL
KEGG Report hgl:101702107 UniProtKB/TrEMBL
NCBI Gene Tmod3 ENTREZGENE
PANTHER PTHR10901 UniProtKB/TrEMBL
  PTHR10901:SF18 UniProtKB/TrEMBL
Pfam Tropomodulin UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0A0P6K1T5 ENTREZGENE, UniProtKB/TrEMBL