TMOD3 (tropomodulin 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: TMOD3 (tropomodulin 3) Pan paniscus
Analyze
Symbol: TMOD3
Name: tropomodulin 3
RGD ID: 12046049
Description: ENCODES a protein that exhibits tropomyosin binding (inferred); INVOLVED IN actin cytoskeleton organization (inferred); actin filament organization (inferred); erythrocyte development (inferred); FOUND IN cytoskeleton (inferred); myofibril (inferred); striated muscle thin filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tropomodulin-3
RGD Orthologs
Human
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21641,066,524 - 41,148,773 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11545,247,031 - 45,364,495 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01530,771,245 - 30,853,473 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11549,100,716 - 49,182,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1549,100,716 - 49,182,218 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TMOD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21641,066,524 - 41,148,773 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11545,247,031 - 45,364,495 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01530,771,245 - 30,853,473 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11549,100,716 - 49,182,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1549,100,716 - 49,182,218 (+)Ensemblpanpan1.1panPan2
TMOD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381551,919,141 - 51,947,295 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1551,829,628 - 51,947,295 (+)EnsemblGRCh38hg38GRCh38
GRCh371552,121,825 - 52,204,335 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361549,909,181 - 49,989,142 (+)NCBINCBI36Build 36hg18NCBI36
Build 341549,909,180 - 49,989,136NCBI
Celera1529,015,228 - 29,097,738 (+)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1528,952,327 - 29,034,886 (+)NCBIHuRef
CHM1_11552,239,893 - 52,322,383 (+)NCBICHM1_1
T2T-CHM13v2.01549,731,817 - 49,754,929 (+)NCBIT2T-CHM13v2.0
Tmod3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,732,042 - 2,765,587 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,732,042 - 2,783,966 (-)NCBIChiLan1.0ChiLan1.0
TMOD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13017,509,533 - 17,594,355 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3017,455,987 - 17,592,580 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3017,436,024 - 17,520,969 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03017,655,654 - 17,740,767 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3017,588,331 - 17,740,756 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13017,577,408 - 17,662,179 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03017,695,191 - 17,780,148 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03017,801,824 - 17,886,562 (+)NCBIUU_Cfam_GSD_1.0
Tmod3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864095,804,469 - 95,879,105 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647113,602,732 - 13,729,228 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647113,652,532 - 13,729,311 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMOD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12631,470,138 - 31,549,615 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2631,471,362 - 31,549,571 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048109,665,882 - 109,757,541 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmod3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247318,494,259 - 8,531,971 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247318,490,157 - 8,551,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000034399   ⟹   ENSPPAP00000011738
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1549,100,716 - 49,182,218 (+)Ensembl
RefSeq Acc Id: XM_003827843   ⟹   XP_003827891
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21641,066,524 - 41,148,773 (+)NCBI
NHGRI_mPanPan11545,247,031 - 45,329,252 (+)NCBI
Mhudiblu_PPA_v01530,771,245 - 30,853,473 (+)NCBI
PanPan1.11549,100,716 - 49,182,221 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003827891 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000011738
  ENSPPAP00000011738.1
Reference Protein Sequences
RefSeq Acc Id: XP_003827891   ⟸   XM_003827843
- UniProtKB: A0A2R9A378 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000011738   ⟸   ENSPPAT00000034399


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029067 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034399.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro LRR_dom_sf UniProtKB/TrEMBL
  TMOD UniProtKB/TrEMBL
KEGG Report pps:100988659 UniProtKB/TrEMBL
NCBI Gene TMOD3 ENTREZGENE
PANTHER PTHR10901 UniProtKB/TrEMBL
  PTHR10901:SF18 UniProtKB/TrEMBL
Pfam Tropomodulin UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0A2R9A378 ENTREZGENE, UniProtKB/TrEMBL