PNLIPRP1 (pancreatic lipase related protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PNLIPRP1 (pancreatic lipase related protein 1) Canis lupus familiaris
Analyze
Symbol: PNLIPRP1
Name: pancreatic lipase related protein 1
RGD ID: 12112270
Description: ENCODES a protein that exhibits calcium ion binding; lipase activity; INVOLVED IN pancreas development (ortholog); response to glucocorticoid (ortholog); response to peptide hormone (ortholog); ASSOCIATED WITH prostate cancer (ortholog); syndromic microphthalmia 11 (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: inactive pancreatic lipase-related protein 1; lipase; PL-RP1; PLRP1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12827,167,754 - 27,183,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2827,139,230 - 27,212,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2827,318,314 - 27,333,662 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02827,704,442 - 27,719,793 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2827,675,917 - 27,749,003 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12827,258,945 - 27,274,286 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02827,278,370 - 27,293,714 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02827,467,324 - 27,482,673 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PNLIPRP1Dogprostate cancer  ISOPNLIPRP1 (Homo sapiens)9068941 RGDPMID:11384102 and REF_RGD_ID:2302990
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PNLIPRP1Dogsyndromic microphthalmia 11  ISOPNLIPRP1 (Homo sapiens)8554872ClinVar Annotator: match by term: Microphthalmia and syndromic 11ClinVarPMID:28492532


Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PNLIPRP1Dogcell projection located_inIEAUniProtKB-KW:KW-0966150520179 UniProtGO_REF:0000043
PNLIPRP1Dogcytoplasmic vesicle located_inIEAUniProtKB-KW:KW-0968150520179 UniProtGO_REF:0000043
PNLIPRP1Dogextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
PNLIPRP1Dogextracellular region located_inIEAUniProtKB-SubCell:SL-0243150520179 UniProtGO_REF:0000044
PNLIPRP1Dogextracellular space NOT|located_inISOPNLIPRP1 (Homo sapiens)9068941 PMID:19824014UniProtPMID:19824014
PNLIPRP1Dogextracellular space  ISOPnliprp1 (Rattus norvegicus)9068941 RGDPMID:8967484 and REF_RGD_ID:2303161
PNLIPRP1Dogneuron projection located_inIEAUniProtKB-SubCell:SL-0518150520179 UniProtGO_REF:0000044
PNLIPRP1Dogzymogen granule membrane located_inIEAUniProtKB-SubCell:SL-0549150520179 UniProtGO_REF:0000044

Molecular Function
1 to 10 of 10 rows

  
1 to 10 of 10 rows

PMID:2502543   PMID:3562437   PMID:9726421   PMID:22301074   PMID:30032202  



PNLIPRP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12827,167,754 - 27,183,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2827,139,230 - 27,212,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2827,318,314 - 27,333,662 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02827,704,442 - 27,719,793 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2827,675,917 - 27,749,003 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12827,258,945 - 27,274,286 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02827,278,370 - 27,293,714 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02827,467,324 - 27,482,673 (+)NCBIUU_Cfam_GSD_1.0
PNLIPRP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810116,590,959 - 116,609,175 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10116,590,385 - 116,609,175 (+)EnsemblGRCh38hg38GRCh38
GRCh3710118,350,471 - 118,368,687 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610118,340,480 - 118,358,676 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410118,340,479 - 118,358,676NCBI
Celera10112,079,787 - 112,097,984 (+)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10111,977,755 - 111,995,968 (+)NCBIHuRef
CHM1_110118,633,621 - 118,651,818 (+)NCBICHM1_1
T2T-CHM13v2.010117,485,016 - 117,503,281 (+)NCBIT2T-CHM13v2.0
Pnliprp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391958,717,319 - 58,732,601 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1958,717,319 - 58,732,601 (+)EnsemblGRCm39 Ensembl
GRCm381958,728,887 - 58,744,169 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1958,728,887 - 58,744,169 (+)EnsemblGRCm38mm10GRCm38
MGSCv371958,803,377 - 58,818,659 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361958,782,137 - 58,797,419 (+)NCBIMGSCv36mm8
Celera1960,925,754 - 60,941,038 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1954.49NCBI
Pnliprp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81267,854,027 - 267,869,654 (+)NCBIGRCr8
mRatBN7.21257,867,885 - 257,883,514 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1257,867,885 - 257,883,514 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1266,072,078 - 266,087,671 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01272,778,094 - 272,793,685 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01265,420,355 - 265,436,179 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01279,867,034 - 279,882,663 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1279,867,034 - 279,882,663 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01287,228,054 - 287,243,683 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41265,237,786 - 265,253,415 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11265,448,830 - 265,464,460 (+)NCBI
Celera1253,523,704 - 253,539,212 (+)NCBICelera
Cytogenetic Map1q55NCBI
Pnliprp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543121,391,166 - 21,406,617 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543121,391,166 - 21,406,617 (+)NCBIChiLan1.0ChiLan1.0
Pnliprp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721318,998,121 - 19,012,865 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364866,548,603 - 6,563,148 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364866,548,481 - 6,563,144 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNLIPRP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14126,797,074 - 126,812,152 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114126,796,943 - 126,812,152 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214138,093,021 - 138,108,274 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PNLIPRP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19109,397,970 - 109,417,422 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9109,399,227 - 109,417,351 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604870,633,565 - 70,671,594 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pnliprp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473729,967,294 - 29,982,737 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in PNLIPRP1
205 total Variants






Ensembl Acc Id: ENSCAFT00000018780   ⟹   ENSCAFP00000017400
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2827,139,230 - 27,156,435 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000018803   ⟹   ENSCAFP00000017422
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2827,191,208 - 27,212,178 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000018834   ⟹   ENSCAFP00000017453
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2827,166,983 - 27,183,104 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000062020   ⟹   ENSCAFP00000054722
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2827,139,230 - 27,180,327 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000066301   ⟹   ENSCAFP00000052920
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2827,139,230 - 27,212,178 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000075847   ⟹   ENSCAFP00000046557
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2827,139,230 - 27,209,978 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000078730   ⟹   ENSCAFP00000052807
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2827,139,230 - 27,183,199 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000081128   ⟹   ENSCAFP00000054766
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2827,139,230 - 27,156,435 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000086324   ⟹   ENSCAFP00000063228
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2827,139,230 - 27,180,327 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000086903   ⟹   ENSCAFP00000055930
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2827,166,983 - 27,181,449 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845055092   ⟹   ENSCAFP00845043322
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2827,675,917 - 27,749,003 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845055098   ⟹   ENSCAFP00845043327
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2827,675,917 - 27,716,793 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845055101   ⟹   ENSCAFP00845043330
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2827,675,917 - 27,693,125 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845055110   ⟹   ENSCAFP00845043334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2827,704,474 - 27,749,003 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845055113   ⟹   ENSCAFP00845043337
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2827,704,474 - 27,749,003 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845055120   ⟹   ENSCAFP00845043344
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2827,704,474 - 27,719,793 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845055122   ⟹   ENSCAFP00845043346
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2827,704,474 - 27,716,793 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845055125   ⟹   ENSCAFP00845043349
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2827,727,900 - 27,749,003 (+)Ensembl
RefSeq Acc Id: NM_001003319   ⟹   NP_001003319
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12827,167,754 - 27,183,104 (+)NCBI
Dog10K_Boxer_Tasha2827,318,314 - 27,333,662 (+)NCBI
ROS_Cfam_1.02827,704,442 - 27,719,793 (+)NCBI
UMICH_Zoey_3.12827,258,945 - 27,274,286 (+)NCBI
UNSW_CanFamBas_1.02827,278,370 - 27,293,714 (+)NCBI
UU_Cfam_GSD_1.02827,467,324 - 27,482,673 (+)NCBI
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_001003319 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA30840 (Get FASTA)   NCBI Sequence Viewer  
  AAA30885 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000017453.4
  ENSCAFP00030040719.1
  ENSCAFP00040040526.1
  ENSCAFP00845043344
  ENSCAFP00845043344.1
GenBank Protein P06857 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
1 to 5 of 19 rows
1 to 5 of 19 rows
RefSeq Acc Id: NP_001003319   ⟸   NM_001003319
- Peptide Label: precursor
- UniProtKB: Q28287 (UniProtKB/Swiss-Prot),   P06857 (UniProtKB/Swiss-Prot),   A0A8C0KLE5 (UniProtKB/TrEMBL),   A0A8C0TUH8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000052807   ⟸   ENSCAFT00000078730
Ensembl Acc Id: ENSCAFP00000017400   ⟸   ENSCAFT00000018780
Ensembl Acc Id: ENSCAFP00000017453   ⟸   ENSCAFT00000018834
Ensembl Acc Id: ENSCAFP00000017422   ⟸   ENSCAFT00000018803
PLAT



1 to 40 of 53 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCAFG00000011815 Ensembl, UniProtKB/Swiss-Prot
  ENSCAFG00030025195 UniProtKB/Swiss-Prot
  ENSCAFG00040024900 UniProtKB/Swiss-Prot
  ENSCAFG00845030995 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSCAFT00000018834.4 UniProtKB/Swiss-Prot
  ENSCAFT00030046588.1 UniProtKB/Swiss-Prot
  ENSCAFT00040046440.1 UniProtKB/Swiss-Prot
  ENSCAFT00845055120 ENTREZGENE
  ENSCAFT00845055120.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot
  PLAT/LH2 domain UniProtKB/Swiss-Prot
InterPro AB_hydrolase UniProtKB/Swiss-Prot
  Lipase/vitellogenin UniProtKB/Swiss-Prot
  Lipase_LIPH UniProtKB/Swiss-Prot
  Lipase_N UniProtKB/Swiss-Prot
  Lipase_panc UniProtKB/Swiss-Prot
  PLAT/LH2_dom UniProtKB/Swiss-Prot
  PLAT/LH2_dom_sf UniProtKB/Swiss-Prot
  TAG_lipase UniProtKB/Swiss-Prot
KEGG Report cfa:404010 UniProtKB/Swiss-Prot
NCBI Gene PNLIPRP1 ENTREZGENE
PANTHER INACTIVE PANCREATIC LIPASE-RELATED PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR11610 UniProtKB/Swiss-Prot
Pfam Lipase UniProtKB/Swiss-Prot
  PLAT UniProtKB/Swiss-Prot
PIRSF Lipoprotein_lipase_LIPH UniProtKB/Swiss-Prot
PRINTS PANCLIPASE UniProtKB/Swiss-Prot
  TAGLIPASE UniProtKB/Swiss-Prot
PROSITE LIPASE_SER UniProtKB/Swiss-Prot
  PLAT UniProtKB/Swiss-Prot
SMART LH2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49723 UniProtKB/Swiss-Prot
  SSF53474 UniProtKB/Swiss-Prot
UniProt A0A8C0KLE5 ENTREZGENE
  A0A8C0PIH8_CANLF UniProtKB/TrEMBL
  A0A8C0PL65_CANLF UniProtKB/TrEMBL
  A0A8C0PRG8_CANLF UniProtKB/TrEMBL
  A0A8C0TRB5_CANLF UniProtKB/TrEMBL
  A0A8C0TUH8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z6M0_CANLF UniProtKB/TrEMBL
1 to 40 of 53 rows