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Gene: PSMC4 (proteasome 26S subunit, ATPase 4) Canis lupus familiaris

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Symbol:

PSMC4

Name:

proteasome 26S subunit, ATPase 4

RGD ID:

12089827

Description:

ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); nucleotide binding (inferred); INVOLVED IN blastocyst development (inferred); positive regulation of proteasomal protein catabolic process (inferred); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN cytosolic proteasome complex (ortholog); inclusion body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

26S protease regulatory subunit 6B; 26S proteasome regulatory subunit 6B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	113,548,351 - 113,557,725 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	113,548,373 - 113,557,630 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	112,952,245 - 112,961,621 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	114,148,644 - 114,157,982 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	114,148,650 - 114,157,892 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	113,707,548 - 113,716,884 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	113,340,335 - 113,349,711 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	114,334,441 - 114,343,783 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PSMC4	Dog	Carpenter syndrome 2		ISO	PSMC4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Carpenter syndrome 2	ClinVar	PMID:28492532
PSMC4	Dog	congenital hypoplastic anemia		ISO	PSMC4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital hypoplastic anemia	ClinVar	PMID:28492532
PSMC4	Dog	craniosynostosis 1		ISO	PSMC4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: TWIST1-related craniosynostosis	ClinVar	PMID:28492532
PSMC4	Dog	Diamond-Blackfan anemia		ISO	PSMC4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Aase syndrome	ClinVar	PMID:28492532
PSMC4	Dog	maple syrup urine disease		ISO	PSMC4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Maple syrup urine disease	ClinVar	PMID:28492532
PSMC4	Dog	maturity-onset diabetes of the young type 1		ISO	PSMC4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Type 2 diabetes mellitus	ClinVar	PMID:28492532
PSMC4	Dog	type 2 diabetes mellitus		ISO	PSMC4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Type 2 diabetes mellitus	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PSMC4	Dog	amyotrophic lateral sclerosis		ISO	Psmc4 (Mus musculus)	9068941		MouseDO

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PSMC4	Dog	blastocyst development	acts_upstream_of_or_within	IEA	UniProtKB:P54775 and ensembl:ENSMUSP00000032824	150520179		Ensembl	GO_REF:0000107
PSMC4	Dog	positive regulation of proteasomal protein catabolic process	involved_in	IEA	GO:0036402	150520179		GOC	GO_REF:0000108
PSMC4	Dog	proteasome-mediated ubiquitin-dependent protein catabolic process	involved_in	IBA	FB:FBgn0015282 more ...	150520179		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PSMC4	Dog	ciliary basal body	located_in	IEA	UniProtKB:A8K2M0 more ...	150520179		Ensembl	GO_REF:0000107
PSMC4	Dog	cytosol	located_in	IEA	UniProtKB:A8K2M0 more ...	150520179		Ensembl	GO_REF:0000107
PSMC4	Dog	cytosolic proteasome complex		ISO	Psmc4 (Rattus norvegicus)	9068941		RGD	PMID:18986984 and REF_RGD_ID:7242199
PSMC4	Dog	inclusion body		ISO	Psmc4 (Rattus norvegicus)	9068941		RGD	PMID:18986984 and REF_RGD_ID:7242199
PSMC4	Dog	nucleoplasm	located_in	IEA	UniProtKB:A8K2M0 more ...	150520179		Ensembl	GO_REF:0000107
PSMC4	Dog	proteasome accessory complex	part_of	IEA	UniProtKB:P54775 and ensembl:ENSMUSP00000032824	150520179		Ensembl	GO_REF:0000107
PSMC4	Dog	proteasome complex	part_of	IEA	UniProtKB:P43686 and ensembl:ENSP00000157812	150520179		Ensembl	GO_REF:0000107
PSMC4	Dog	proteasome complex	part_of	IEA	UniProtKB-KW:KW-0647	150520179		UniProt	GO_REF:0000043
PSMC4	Dog	proteasome regulatory particle, base subcomplex	part_of	IBA	FB:FBgn0015282 more ...	150520179		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PSMC4	Dog	ATP binding	enables	IEA	UniProtKB-KW:KW-0067	150520179		UniProt	GO_REF:0000043
PSMC4	Dog	ATP binding	enables	IEA	InterPro:IPR003959 and InterPro:IPR003960	150520179		InterPro	GO_REF:0000002
PSMC4	Dog	ATP hydrolysis activity	enables	IEA	InterPro:IPR003593 more ...	150520179		InterPro	GO_REF:0000002
PSMC4	Dog	nucleotide binding	enables	IEA	UniProtKB-KW:KW-0547	150520179		UniProt	GO_REF:0000043
PSMC4	Dog	proteasome-activating activity	enables	IBA	PANTHER:PTN000553037 more ...	150520179		GO_Central	GO_REF:0000033
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:O75832 more ...	9068941	PMID:33961781 and PMID:35271311	IntAct	PMID:33961781 and PMID:35271311
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:P55036	9068941	PMID:16990800	IntAct	PMID:16990800
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:Q9Z2X2	9068941	PMID:17292836	IntAct	PMID:17292836
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:Q0PF16	9068941	PMID:22078707	UniProt	PMID:22078707
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:Q8TCF1	9068941	PMID:29804830	UniProt	PMID:29804830
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:O75832 more ...	9068941	PMID:19490896	IntAct	PMID:19490896
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:O75832	9068941	PMID:12525503 more ...	IntAct	PMID:12525503 more ...
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:P00441 more ...	9068941	PMID:32814053	IntAct	PMID:32814053
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:P62191	9068941	PMID:26496610	IntAct	PMID:26496610
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:P62333	9068941	PMID:27342858 and PMID:29636472	IntAct	PMID:27342858 and PMID:29636472
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:O75832 and UniProtKB:P62195	9068941	PMID:16189514 and PMID:32296183	IntAct	PMID:16189514 and PMID:32296183
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:P62195	9068941	PMID:29892012	IntAct	PMID:29892012
PSMC4	Dog	protein binding	enables	ISO	UniProtKB:P36957	9068941	PMID:29128334	IntAct	PMID:29128334

PMID:22301074	PMID:30032202

PSMC4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	113,548,351 - 113,557,725 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	113,548,373 - 113,557,630 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	112,952,245 - 112,961,621 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	114,148,644 - 114,157,982 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	114,148,650 - 114,157,892 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	113,707,548 - 113,716,884 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	113,340,335 - 113,349,711 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	114,334,441 - 114,343,783 (-)	NCBI		UU_Cfam_GSD_1.0

PSMC4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	39,971,165 - 39,981,764 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	39,971,165 - 39,981,764 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	40,477,072 - 40,487,671 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	45,168,913 - 45,179,193 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	45,168,912 - 45,179,191	NCBI
Celera	19	37,275,447 - 37,285,724 (+)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	36,913,453 - 36,924,135 (+)	NCBI		HuRef
CHM1_1	19	40,476,958 - 40,487,716 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	42,791,375 - 42,801,971 (+)	NCBI		T2T-CHM13v2.0

Psmc4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	27,741,127 - 27,749,517 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	27,741,132 - 27,749,526 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	28,041,702 - 28,050,092 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	28,041,707 - 28,050,101 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	28,826,721 - 28,835,111 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	27,750,477 - 27,758,803 (-)	NCBI		MGSCv36	mm8
Celera	7	22,608,215 - 22,616,605 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	16.11	NCBI

Psmc4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	92,476,690 - 92,485,268 (-)	NCBI		GRCr8
mRatBN7.2	1	83,349,127 - 83,357,497 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	83,348,592 - 83,357,494 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	88,759,384 - 88,767,734 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	97,217,473 - 97,225,843 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	90,515,238 - 90,523,588 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	84,978,220 - 84,986,536 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	84,978,206 - 84,986,581 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	86,194,919 - 86,203,235 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	83,151,149 - 83,159,464 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	83,229,258 - 83,237,575 (-)	NCBI
Celera	1	77,748,725 - 77,757,041 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Psmc4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955578	1,113,445 - 1,120,370 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955578	1,113,445 - 1,120,050 (-)	NCBI	ChiLan1.0	ChiLan1.0

PSMC4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	46,232,549 - 46,243,056 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	48,103,185 - 48,113,698 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	37,018,112 - 37,028,490 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	45,533,141 - 45,543,245 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	45,533,141 - 45,543,245 (+)	Ensembl	panpan1.1		panPan2

Psmc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	14,094,546 - 14,100,215 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	2,522,615 - 2,528,284 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	2,522,665 - 2,528,279 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PSMC4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	48,406,376 - 48,416,215 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	48,406,237 - 48,414,470 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PSMC4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	34,486,303 - 34,495,392 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	34,486,338 - 34,495,251 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	12,578,624 - 12,587,383 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Psmc4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624925	119,777 - 130,723 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624925	119,837 - 127,678 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in PSMC4
102 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10


RefSeq Transcripts	XM_005616577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038468147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038528897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038593166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038656994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000008685 ⟹ ENSCAFP00000008051

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	113,548,373 - 113,557,630 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845007350 ⟹ ENSCAFP00845005828

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	114,148,650 - 114,157,892 (-)	Ensembl

RefSeq Acc Id:

XM_005616577 ⟹ XP_005616634

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	113,548,351 - 113,557,725 (-)	NCBI
Dog10K_Boxer_Tasha	1	112,952,245 - 112,961,621 (-)	NCBI

Sequence:

show sequence

CCCGCTCTAGCGAAGCCTTGAACTACGTTTCCCAGAATCCGCGGAGGCCCTGGCCTTCCGGTAGCGTCGCCGGAAGCGGTGACTGGATCTGGCTGGGCCACAGAGGCCGGCTTGGTCACTATGGAGGA
GATAGGCATCTTGGTGGAGAAAGCTCAGGATGAGATCCCAGCACTGTCTGTGTCACGGCCCCAGACTGGCCTTTCCTTCCTGGGGCCTGAGCCTGAGGACCTGGAGGACCTGTACAGCCGCTACAAGA
AGCTGCAGCAAGAGCTGGAATTCCTGGAGGTGCAGGAGGAGTACATCAAGGATGAGCAGAAGAACCTGAAGAAGGAATTCCTCCATGCTCAGGAGGAGGTGAAGCGAATCCAGAGCATCCCACTGGTC
ATCGGGCAGTTTTTGGAGGCTGTGGATCAGAATACAGCCATTGTGGGCTCCACCACAGGCTCCAACTACTATGTGCGCATCCTGAGCACCATTGACCGGGAGCTGCTCAAGCCGAACGCGTCTGTGGC
CCTCCATAAGCACAGCAACGCTCTGGTGGATGTGCTGCCTCCTGAGGCCGACAGCAGTATCATGATGCTCACCTCAGACCAGAAGCCAGACGTGATGTATGCAGACATCGGGGGCATGGACATCCAGA
AGCAGGAGGTGCGGGAGGCCGTGGAGCTTCCACTTACACACTTCGAGCTCTATAAGCAGATCGGCATCGACCCTCCCCGAGGCGTCCTAATGTACGGCCCGCCTGGCTGCGGGAAGACCATGTTAGCA
AAGGCTGTGGCTCATCACACGACAGCTGCATTTATCCGGGTCGTGGGCTCAGAGTTTGTCCAGAAGTACCTGGGCGAGGGCCCTCGCATGGTCCGGGACGTGTTCCGCCTGGCCAAGGAGAATGCACC
TGCTATCATCTTCATAGATGAGATCGATGCCATTGCCACCAAGAGATTTGATGCCCAGACAGGAGCTGACAGGGAGGTTCAGAGAATCCTGCTGGAGCTACTGAATCAAATGGATGGATTTGACCAGA
ACGTTAATGTCAAGGTGATCATGGCCACAAACAGAGCAGACACATTGGATCCTGCCCTGCTGCGGCCCGGACGTCTTGATCGTAAAATTGAATTTCCGCTCCCTGACCGCCGCCAGAAGAGGTTAATT
TTCTCCACTATCACCAGCAAGATGAACCTCTCGGAGGAGGTTGACTTGGAAGATTATGTGGCCCGGCCAGATAAGATTTCAGGAGCTGATATCAACTCCATCTGTCAGGAGAGTGGAATGCTGGCCGT
CCGTGAGAACCGCTACATTGTTCTGGCAAAGGACTTTGAAAAAGCATATAAGACTGTCATCAAGAAGGACGAGCAGGAGCATGAGTTTTATAAGTGACCCAGACCTTGTGGTGTGAGGGGAGAGGAGG
GAAGGGGACTTCTCTCACCTCCCCAACCGCTGTCCCAAAACCTAGTGTTGTTTTTTCTTTACCCATGATTGGTTTACTCAATAAAGATAAAAGATTGAATCTGTTTAA

hide sequence

RefSeq Acc Id:

XM_038468147 ⟹ XP_038324075

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	113,707,548 - 113,716,884 (-)	NCBI

RefSeq Acc Id:

XM_038528897 ⟹ XP_038384825

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	114,334,441 - 114,343,783 (-)	NCBI

RefSeq Acc Id:

XM_038593166 ⟹ XP_038449094

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	113,340,335 - 113,349,711 (-)	NCBI

RefSeq Acc Id:

XM_038656994 ⟹ XP_038512922

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	114,148,644 - 114,157,982 (-)	NCBI


Protein RefSeqs	XP_005616634	(Get FASTA)	NCBI Sequence Viewer
	XP_038324075	(Get FASTA)	NCBI Sequence Viewer
	XP_038384825	(Get FASTA)	NCBI Sequence Viewer
	XP_038449094	(Get FASTA)	NCBI Sequence Viewer
	XP_038512922	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000008051.3
	ENSCAFP00030001374.1
	ENSCAFP00030001392.1
	ENSCAFP00040019705.1
	ENSCAFP00845005828
	ENSCAFP00845005828.1

RefSeq Acc Id:

XP_005616634 ⟸ XM_005616577

- UniProtKB:

A0A8C0SF08 (UniProtKB/TrEMBL), A0A8C0KT89 (UniProtKB/TrEMBL), A0A8I3MR89 (UniProtKB/TrEMBL), A0A8C0LWE0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEEIGILVEKAQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNA
SVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE
NAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGM
LAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK

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Ensembl Acc Id:

ENSCAFP00000008051 ⟸ ENSCAFT00000008685

RefSeq Acc Id:

XP_038324075 ⟸ XM_038468147

RefSeq Acc Id:

XP_038449094 ⟸ XM_038593166

RefSeq Acc Id:	XP_038512922 ⟸ XM_038656994
- UniProtKB:	A0A8C0SF08 (UniProtKB/TrEMBL), A0A8C0KT89 (UniProtKB/TrEMBL), A0A8I3MR89 (UniProtKB/TrEMBL), A0A8C0LWE0 (UniProtKB/TrEMBL)

Protein Domains

AAA+ ATPase

RGD ID:

13682302

Promoter ID:

EPDNEW_C371

Type:

initiation region

Name:

PSMC4_1

Description:

proteasome 26S subunit, ATPase 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	113,557,645 - 113,557,705	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000005398	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030000909	UniProtKB/TrEMBL
	ENSCAFG00040012331	UniProtKB/TrEMBL
	ENSCAFG00845004088	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000008685.5	UniProtKB/TrEMBL
	ENSCAFT00030001548.1	UniProtKB/TrEMBL
	ENSCAFT00030001567.1	UniProtKB/TrEMBL
	ENSCAFT00040022738.1	UniProtKB/TrEMBL
	ENSCAFT00845007350	ENTREZGENE
	ENSCAFT00845007350.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.8.60	UniProtKB/TrEMBL
	2.40.50.140	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	26S_Proteasome_ATPase	UniProtKB/TrEMBL
	AAA+_ATPase	UniProtKB/TrEMBL
	AAA_lid_3	UniProtKB/TrEMBL
	ATPase_AAA_core	UniProtKB/TrEMBL
	ATPase_AAA_CS	UniProtKB/TrEMBL
	NA-bd_OB-fold	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Prot_ATP_ID_OB	UniProtKB/TrEMBL
KEGG Report	cfa:100855613	UniProtKB/TrEMBL
NCBI Gene	PSMC4	ENTREZGENE
PANTHER	26S PROTEASOME REGULATORY SUBUNIT	UniProtKB/TrEMBL
Pfam	AAA	UniProtKB/TrEMBL
	AAA_lid_3	UniProtKB/TrEMBL
	Prot_ATP_ID_OB	UniProtKB/TrEMBL
PROSITE	AAA	UniProtKB/TrEMBL
SMART	AAA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8C0KT89	ENTREZGENE
	A0A8C0LWE0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0SF08	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MR89	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:45104	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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