MIR33A (microRNA mir-33a) - Rat Genome Database

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Gene: MIR33A (microRNA mir-33a) Canis lupus familiaris
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Symbol: MIR33A
Name: microRNA mir-33a (Ensembl:microRNA 33a)
RGD ID: 12082636
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-33; cfa-mir-33a; microRNA 33a; MIR33
RGD Orthologs
Human
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,456,613 - 23,456,673 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,456,613 - 23,456,673 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,390,695 - 23,390,755 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,201,614 - 24,201,674 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,201,614 - 24,201,674 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11023,918,597 - 23,918,657 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,239,834 - 24,239,894 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,413,986 - 24,414,046 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
RISC complex  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:18392026  


Genomics

Comparative Map Data
MIR33A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,456,613 - 23,456,673 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,456,613 - 23,456,673 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,390,695 - 23,390,755 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,201,614 - 24,201,674 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,201,614 - 24,201,674 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11023,918,597 - 23,918,657 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,239,834 - 24,239,894 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,413,986 - 24,414,046 (-)NCBIUU_Cfam_GSD_1.0
MIR33A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,900,944 - 41,901,012 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,900,944 - 41,901,012 (+)EnsemblGRCh38hg38GRCh38
GRCh372242,296,948 - 42,297,016 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,626,893 - 40,626,961 (+)NCBINCBI36Build 36hg18NCBI36
Celera2226,103,182 - 26,103,250 (+)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2225,262,647 - 25,262,715 (+)NCBIHuRef
CHM1_12242,257,156 - 42,257,224 (+)NCBICHM1_1
T2T-CHM13v2.02242,379,729 - 42,379,797 (+)NCBIT2T-CHM13v2.0
Mir33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391582,082,323 - 82,082,391 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1582,082,323 - 82,082,391 (+)EnsemblGRCm39 Ensembl
GRCm381582,198,122 - 82,198,190 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1582,198,122 - 82,198,190 (+)EnsemblGRCm38mm10GRCm38
MGSCv371582,028,552 - 82,028,620 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1584,321,842 - 84,321,910 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.54NCBI
Mir33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,593,952 - 115,594,020 (+)NCBIGRCr8
mRatBN7.27113,713,855 - 113,713,923 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,713,855 - 113,713,923 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7115,469,859 - 115,469,927 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,693,366 - 117,693,434 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,662,807 - 117,662,875 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,431,612 - 123,431,680 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,431,612 - 123,431,680 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07123,415,303 - 123,415,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera7110,029,025 - 110,029,093 (+)NCBICelera
Cytogenetic Map7q34NCBI


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00000032659
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1023,456,613 - 23,456,673 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845028055
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1024,201,614 - 24,201,674 (-)Ensembl
RefSeq Acc Id: NR_049219
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11023,456,613 - 23,456,673 (-)NCBI
Dog10K_Boxer_Tasha1023,390,695 - 23,390,755 (-)NCBI
ROS_Cfam_1.01024,201,614 - 24,201,674 (-)NCBI
UMICH_Zoey_3.11023,918,597 - 23,918,657 (-)NCBI
UNSW_CanFamBas_1.01024,239,834 - 24,239,894 (-)NCBI
UU_Cfam_GSD_1.01024,413,986 - 24,414,046 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000020552 Ensembl
  ENSCAFG00845015755 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845028055 ENTREZGENE
miRBase MI0007988 ENTREZGENE
NCBI Gene MIR33A ENTREZGENE
RNAcentral URS00001815EE RNACentral
  URS00007E4531 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR33A  microRNA mir-33a    microRNA 33a  Symbol and/or name change 5135510 APPROVED