TIMM17A (translocase of inner mitochondrial membrane 17A) - Rat Genome Database

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Gene: TIMM17A (translocase of inner mitochondrial membrane 17A) Canis lupus familiaris
Analyze
Symbol: TIMM17A
Name: translocase of inner mitochondrial membrane 17A
RGD ID: 12081611
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN positive regulation of protein processing (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial import inner membrane translocase subunit Tim17-A; translocase of inner mitochondrial membrane 17 homolog A; translocase of inner mitochondrial membrane 17 homolog A (yeast)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.171,002,710 - 1,015,803 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl71,003,236 - 1,015,694 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,054,363 - 1,067,437 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.071,010,536 - 1,023,620 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl71,010,178 - 1,023,535 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17998,561 - 1,011,620 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.071,106,754 - 1,119,814 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.071,130,770 - 1,143,830 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TIMM17A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.171,002,710 - 1,015,803 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl71,003,236 - 1,015,694 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,054,363 - 1,067,437 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.071,010,536 - 1,023,620 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl71,010,178 - 1,023,535 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17998,561 - 1,011,620 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.071,106,754 - 1,119,814 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.071,130,770 - 1,143,830 (-)NCBIUU_Cfam_GSD_1.0
TIMM17A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381201,955,503 - 201,970,664 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1201,955,503 - 201,970,664 (+)EnsemblGRCh38hg38GRCh38
GRCh371201,924,631 - 201,939,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361200,191,271 - 200,206,412 (+)NCBINCBI36Build 36hg18NCBI36
Build 341198,656,304 - 198,671,444NCBI
Celera1175,048,350 - 175,063,536 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1173,090,472 - 173,105,672 (+)NCBIHuRef
CHM1_11203,346,842 - 203,362,018 (+)NCBICHM1_1
T2T-CHM13v2.01201,213,194 - 201,228,387 (+)NCBIT2T-CHM13v2.0
Timm17a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,229,273 - 135,241,475 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,222,951 - 135,241,516 (-)EnsemblGRCm39 Ensembl
GRCm381135,301,535 - 135,313,737 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,295,213 - 135,313,778 (-)EnsemblGRCm38mm10GRCm38
MGSCv371137,198,112 - 137,210,314 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,117,946 - 137,130,148 (-)NCBIMGSCv36mm8
Celera1137,926,600 - 137,940,154 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.48NCBI
Timm17a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,282,918 - 49,296,363 (-)NCBIGRCr8
mRatBN7.21346,731,117 - 46,742,604 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,730,660 - 46,742,655 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1349,337,908 - 49,349,396 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01350,625,983 - 50,637,472 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01347,890,625 - 47,902,136 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01352,124,641 - 52,136,127 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,124,635 - 52,136,127 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,174,172 - 57,185,658 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,297,516 - 48,309,303 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11348,311,558 - 48,323,346 (-)NCBI
Celera1347,051,694 - 47,063,180 (-)NCBICelera
Cytogenetic Map13q13NCBI
Timm17a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540638,020,850 - 38,031,651 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540638,020,886 - 38,031,651 (+)NCBIChiLan1.0ChiLan1.0
TIMM17A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,412,600 - 47,427,100 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,377,315 - 47,391,712 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01177,552,399 - 177,567,148 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11181,854,424 - 181,868,960 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1181,854,412 - 181,868,960 (+)Ensemblpanpan1.1panPan2
Timm17a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,301,779 - 73,313,520 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365672,536,454 - 2,548,138 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIMM17A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1024,200,368 - 24,211,786 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11024,200,345 - 24,211,790 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TIMM17A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12527,436,066 - 27,450,512 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605528,218,698 - 28,232,886 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Timm17a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248078,814,582 - 8,826,622 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248078,814,584 - 8,826,649 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TIMM17A
103 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022420807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038606026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038606027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038606028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_537124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000016894   ⟹   ENSCAFP00000015634
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl71,003,236 - 1,015,694 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845029188   ⟹   ENSCAFP00845022955
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl71,010,178 - 1,023,535 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845029210   ⟹   ENSCAFP00845022973
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl71,011,131 - 1,019,159 (-)Ensembl
RefSeq Acc Id: XM_022420807   ⟹   XP_022276515
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.171,002,710 - 1,015,803 (-)NCBI
Dog10K_Boxer_Tasha71,054,363 - 1,067,437 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038480567   ⟹   XP_038336495
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.17998,561 - 1,011,620 (-)NCBI
RefSeq Acc Id: XM_038480568   ⟹   XP_038336496
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.17998,561 - 1,011,620 (-)NCBI
RefSeq Acc Id: XM_038480569   ⟹   XP_038336497
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.171,003,758 - 1,011,620 (-)NCBI
RefSeq Acc Id: XM_038541893   ⟹   XP_038397821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.071,130,770 - 1,143,830 (-)NCBI
RefSeq Acc Id: XM_038541894   ⟹   XP_038397822
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.071,130,770 - 1,143,830 (-)NCBI
RefSeq Acc Id: XM_038541895   ⟹   XP_038397823
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.071,135,967 - 1,143,830 (-)NCBI
RefSeq Acc Id: XM_038560701   ⟹   XP_038416629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha71,059,559 - 1,067,437 (-)NCBI
RefSeq Acc Id: XM_038606026   ⟹   XP_038461954
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.071,106,754 - 1,119,814 (-)NCBI
RefSeq Acc Id: XM_038606027   ⟹   XP_038461955
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.071,106,754 - 1,119,814 (-)NCBI
RefSeq Acc Id: XM_038606028   ⟹   XP_038461956
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.071,111,936 - 1,119,814 (-)NCBI
RefSeq Acc Id: XM_038670730   ⟹   XP_038526658
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.071,010,536 - 1,023,620 (-)NCBI
RefSeq Acc Id: XM_038670731   ⟹   XP_038526659
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.071,010,536 - 1,023,620 (-)NCBI
RefSeq Acc Id: XM_038670732   ⟹   XP_038526660
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.071,015,743 - 1,023,620 (-)NCBI
RefSeq Acc Id: XM_537124   ⟹   XP_537124
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.171,002,710 - 1,015,803 (-)NCBI
Dog10K_Boxer_Tasha71,054,363 - 1,067,437 (-)NCBI
Sequence:
RefSeq Acc Id: XP_537124   ⟸   XM_537124
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PZD9 (UniProtKB/TrEMBL),   A0A8C0R2A4 (UniProtKB/TrEMBL),   A0A8I3P841 (UniProtKB/TrEMBL),   A0A8C0R1Z5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022276515   ⟸   XM_022420807
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCAFP00000015634   ⟸   ENSCAFT00000016894
RefSeq Acc Id: XP_038336496   ⟸   XM_038480568
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038336495   ⟸   XM_038480567
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038336497   ⟸   XM_038480569
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038461955   ⟸   XM_038606027
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038461954   ⟸   XM_038606026
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038461956   ⟸   XM_038606028
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038526659   ⟸   XM_038670731
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038526658   ⟸   XM_038670730
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PZD9 (UniProtKB/TrEMBL),   A0A8C0R2A4 (UniProtKB/TrEMBL),   A0A8I3P841 (UniProtKB/TrEMBL),   A0A8C0R1Z5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526660   ⟸   XM_038670732
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038416629   ⟸   XM_038560701
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038397822   ⟸   XM_038541894
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038397821   ⟸   XM_038541893
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PZD9 (UniProtKB/TrEMBL),   A0A8C0R1Z5 (UniProtKB/TrEMBL),   A0A8C0R2A4 (UniProtKB/TrEMBL),   A0A8I3P841 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397823   ⟸   XM_038541895
- Peptide Label: isoform X3
Ensembl Acc Id: ENSCAFP00845022973   ⟸   ENSCAFT00845029210
Ensembl Acc Id: ENSCAFP00845022955   ⟸   ENSCAFT00845029188

Promoters
RGD ID:13683867
Promoter ID:EPDNEW_C1933
Type:multiple initiation site
Name:TIMM17A_1
Description:translocase of inner mitochondrial membrane 17A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.171,015,694 - 1,015,754EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010612 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000850 UniProtKB/TrEMBL
  ENSCAFG00040003906 UniProtKB/TrEMBL
  ENSCAFG00845016456 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016894.5 UniProtKB/TrEMBL
  ENSCAFT00030001456.1 UniProtKB/TrEMBL
  ENSCAFT00040007455.1 UniProtKB/TrEMBL
  ENSCAFT00845029188 ENTREZGENE
  ENSCAFT00845029188.1 UniProtKB/TrEMBL
  ENSCAFT00845029210.1 UniProtKB/TrEMBL
InterPro Tim17 UniProtKB/TrEMBL
NCBI Gene TIMM17A ENTREZGENE
PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17 UniProtKB/TrEMBL
  MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM17-A UniProtKB/TrEMBL
Pfam Tim17 UniProtKB/TrEMBL
UniProt A0A8C0PZD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R1Z5 ENTREZGENE
  A0A8C0R2A4 ENTREZGENE
  A0A8I3P048_CANLF UniProtKB/TrEMBL
  A0A8I3P841 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:49619 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-01 TIMM17A  translocase of inner mitochondrial membrane 17A    translocase of inner mitochondrial membrane 17 homolog A (yeast)  Symbol and/or name change 5135510 APPROVED