PABPN1L (PABPN1 like, cytoplasmic) - Rat Genome Database

Send us a Message



Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Grant Resources Citing RGD About Us Contact Us
Search by Genomic Position Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quantitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: PABPN1L (PABPN1 like, cytoplasmic) Canis lupus familiaris
Analyze
Symbol: PABPN1L
Name: PABPN1 like, cytoplasmic
RGD ID: 12065828
Description: ENCODES a protein that exhibits poly(A) binding (ortholog); RNA binding (ortholog); INVOLVED IN maternal-to-zygotic transition of gene expression (ortholog); negative regulation of protein ubiquitination (ortholog); negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: embryonic polyadenylate-binding protein 2; poly(A) binding protein nuclear 1 like, cytoplasmic
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1564,525,929 - 64,527,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha564,537,238 - 64,539,350 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0564,745,924 - 64,748,036 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1564,772,060 - 64,774,172 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0564,603,706 - 64,605,818 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,009,793 - 65,011,905 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
PABPN1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1564,525,929 - 64,527,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha564,537,238 - 64,539,350 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0564,745,924 - 64,748,036 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1564,772,060 - 64,774,172 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0564,603,706 - 64,605,818 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,009,793 - 65,011,905 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
PABPN1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381688,863,333 - 88,870,135 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1688,863,333 - 88,866,660 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371688,929,741 - 88,933,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361687,455,535 - 87,460,515 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1673,996,625 - 74,001,605 (-)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1674,626,902 - 74,630,229 (-)NCBIHuRef
CHM1_11690,341,014 - 90,344,336 (-)NCBICHM1_1
T2T-CHM13v2.01694,933,691 - 94,940,493 (-)NCBIT2T-CHM13v2.0
Pabpn1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,346,210 - 123,349,474 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,346,210 - 123,349,478 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388122,619,471 - 122,622,735 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8122,619,471 - 122,622,739 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv378125,143,371 - 125,146,635 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368125,505,561 - 125,508,825 (-)NCBIMGSCv36mm8
Celera8126,848,856 - 126,852,111 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map871.93NCBI
Pabpn1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81967,578,494 - 67,581,938 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1967,578,496 - 67,581,895 (-)EnsemblGRCr8
mRatBN7.21950,669,965 - 50,673,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,669,967 - 50,673,366 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1957,464,760 - 57,468,206 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,144,881 - 58,148,325 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,363,378 - 60,366,824 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1961,376,697 - 61,380,159 (-)NCBI
Lyon_Normotensive1959,499,435 - 59,502,879 (-)NCBI
Lyon_Hypertensive1961,372,896 - 61,376,340 (-)NCBI
F344_StmMcwi1959,107,523 - 59,110,969 (-)NCBI
Rnor_6.01955,430,808 - 55,434,252 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,430,810 - 55,434,252 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01966,139,323 - 66,142,767 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41952,898,178 - 52,901,622 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1949,909,361 - 49,912,805 (-)NCBICelera
Cytogenetic Map19q12NCBI
Pabpn1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,718,076 - 2,720,322 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049555412,718,076 - 2,720,322 (-)NCBIChiLan1.0ChiLan1.0
PABPN1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21898,638,053 - 98,643,564 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116104,550,599 - 104,555,722 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01669,579,421 - 69,583,803 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11689,234,156 - 89,237,595 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1689,234,156 - 89,237,595 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
Pabpn1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11559,996,957 - 59,999,840 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934925,126,917 - 25,129,241 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936641880,548 - 883,098 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936641880,548 - 883,098 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PABPN1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6858,888 - 861,604 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.16854,605 - 861,969 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.261,049,074 - 1,054,344 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PABPN1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1585,507,295 - 85,511,078 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_0236660471,374,462 - 1,377,258 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1574,251,084 - 74,256,543 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl574,252,703 - 74,255,857 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Pabpn1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624746776,692 - 779,187 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_004624746776,677 - 779,555 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Pabpn1l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11742,247,583 - 42,250,811 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in PABPN1L
18 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038474440   ⟹   XP_038330368
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1564,772,060 - 64,774,172 (+)NCBI
RefSeq Acc Id: XM_038532091   ⟹   XP_038388019
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha564,537,238 - 64,539,350 (+)NCBI
RefSeq Acc Id: XM_038538821   ⟹   XP_038394749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0565,009,793 - 65,011,905 (+)NCBI
RefSeq Acc Id: XM_038602914   ⟹   XP_038458842
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0564,603,706 - 64,605,818 (+)NCBI
RefSeq Acc Id: XM_038667527   ⟹   XP_038523455
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0564,745,924 - 64,748,036 (+)NCBI
RefSeq Acc Id: XP_038330368   ⟸   XM_038474440
RefSeq Acc Id: XP_038458842   ⟸   XM_038602914
RefSeq Acc Id: XP_038523455   ⟸   XM_038667527
RefSeq Acc Id: XP_038388019   ⟸   XM_038532091
RefSeq Acc Id: XP_038394749   ⟸   XM_038538821


Additional Information

Database Acc Id Source(s)
NCBI Gene PABPN1L ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-16 PABPN1L  PABPN1 like, cytoplasmic  PABPN1L  poly(A) binding protein nuclear 1 like, cytoplasmic  Symbol and/or name change 5135510 APPROVED