Pabpn1l (PABPN1 like, cytoplasmic) - Rat Genome Database

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Gene: Pabpn1l (PABPN1 like, cytoplasmic) Heterocephalus glaber
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Symbol: Pabpn1l
Name: PABPN1 like, cytoplasmic
RGD ID: 18922266
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); poly(A) binding (inferred); RNA binding (inferred); INVOLVED IN maternal-to-zygotic transition of gene expression (ortholog); negative regulation of protein ubiquitination (ortholog); negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: embryonic polyadenylate-binding protein 2; poly(A) binding protein nuclear 1 like, cytoplasmic
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624746776,692 - 779,187 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_004624746776,677 - 779,555 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Pabpn1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624746776,692 - 779,187 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_004624746776,677 - 779,555 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
PABPN1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381688,863,333 - 88,870,135 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1688,863,333 - 88,866,660 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371688,929,741 - 88,933,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361687,455,535 - 87,460,515 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1673,996,625 - 74,001,605 (-)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1674,626,902 - 74,630,229 (-)NCBIHuRef
CHM1_11690,341,014 - 90,344,336 (-)NCBICHM1_1
T2T-CHM13v2.01694,933,691 - 94,940,493 (-)NCBIT2T-CHM13v2.0
Pabpn1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,346,210 - 123,349,474 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,346,210 - 123,349,478 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388122,619,471 - 122,622,735 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8122,619,471 - 122,622,739 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv378125,143,371 - 125,146,635 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368125,505,561 - 125,508,825 (-)NCBIMGSCv36mm8
Celera8126,848,856 - 126,852,111 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map871.93NCBI
Pabpn1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81967,578,494 - 67,581,938 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1967,578,496 - 67,581,895 (-)EnsemblGRCr8
mRatBN7.21950,669,965 - 50,673,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,669,967 - 50,673,366 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1957,464,760 - 57,468,206 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,144,881 - 58,148,325 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,363,378 - 60,366,824 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1961,376,697 - 61,380,159 (-)NCBI
Lyon_Normotensive1959,499,435 - 59,502,879 (-)NCBI
Lyon_Hypertensive1961,372,896 - 61,376,340 (-)NCBI
F344_StmMcwi1959,107,523 - 59,110,969 (-)NCBI
Rnor_6.01955,430,808 - 55,434,252 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,430,810 - 55,434,252 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01966,139,323 - 66,142,767 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41952,898,178 - 52,901,622 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1949,909,361 - 49,912,805 (-)NCBICelera
Cytogenetic Map19q12NCBI
Pabpn1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,718,076 - 2,720,322 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049555412,718,076 - 2,720,322 (-)NCBIChiLan1.0ChiLan1.0
PABPN1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21898,638,053 - 98,643,564 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116104,550,599 - 104,555,722 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01669,579,421 - 69,583,803 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11689,234,156 - 89,237,595 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1689,234,156 - 89,237,595 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
PABPN1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1564,525,929 - 64,527,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha564,537,238 - 64,539,350 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0564,745,924 - 64,748,036 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1564,772,060 - 64,774,172 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0564,603,706 - 64,605,818 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,009,793 - 65,011,905 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pabpn1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11559,996,957 - 59,999,840 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934925,126,917 - 25,129,241 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936641880,548 - 883,098 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936641880,548 - 883,098 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PABPN1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6858,888 - 861,604 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.16854,605 - 861,969 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.261,049,074 - 1,054,344 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PABPN1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1585,507,295 - 85,511,078 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_0236660471,374,462 - 1,377,258 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1574,251,084 - 74,256,543 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl574,252,703 - 74,255,857 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Pabpn1l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11742,247,583 - 42,250,811 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004842662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01025582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000020043   ⟹   ENSHGLP00000019845
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624746776,677 - 779,555 (+)Ensembl
RefSeq Acc Id: XM_004842662   ⟹   XP_004842719
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624746776,692 - 779,187 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004842719 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019845
RefSeq Acc Id: XP_004842719   ⟸   XM_004842662
- UniProtKB: A0AAX6P3G8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000019845   ⟸   ENSHGLT00000020043


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014207 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020043 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report hgl:101710651 UniProtKB/TrEMBL
NCBI Gene Pabpn1l ENTREZGENE
PANTHER EMBRYONIC POLYADENYLATE-BINDING PROTEIN 2 UniProtKB/TrEMBL
  EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP RNA-binding domain, RBD UniProtKB/TrEMBL
UniProt A0AAX6P3G8 ENTREZGENE, UniProtKB/TrEMBL