LOC102157295 (atherin) - Rat Genome Database

Name: LOC102157295
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: LOC102157295 (atherin) Canis lupus familiaris

Analyze

Symbol:

LOC102157295

Name:

atherin

RGD ID:

12052506

Description:

ENCODES a protein that exhibits fructose-bisphosphate aldolase activity (ortholog); protease binding (ortholog); INVOLVED IN canonical glycolysis (ortholog); positive regulation of cell migration (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose and mannose metabolic pathway; fructose-1,6-bisphosphatase deficiency pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

keratin-associated protein 10-10-like; uncharacterized protein LOC102157295; uncharaterized LOC112694756 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	18,069,839 - 18,077,265 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	19,648,461 - 19,655,895 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	18,205,816 - 18,213,233 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	6	18,004,777 - 18,012,193 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	17,920,174 - 17,927,597 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	18,234,326 - 18,243,209 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

chromosome 16p11.2 deletion syndrome, 593-kb (ISO)

chromosome 16p11.2 duplication syndrome (ISO)

coronin-1A deficiency (ISO)

cystadenoma (ISO)

genetic disease (ISO)

Glycogen Storage Disease XII (ISO)

hereditary fructose intolerance syndrome (ISO)

schizophrenia (ISO)

spondylocostal dysostosis 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

canonical glycolysis (ISO)

positive regulation of cell migration (ISO)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

membrane (ISO)

plasma membrane (ISO)

protein-containing complex (ISO)

sperm fibrous sheath (ISO)

Z disc (ISO)

Molecular Function

fructose-bisphosphate aldolase activity (ISO)

protease binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

References

Genomics

Comparative Map Data

LOC102157295
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	18,069,839 - 18,077,265 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	19,648,461 - 19,655,895 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	18,205,816 - 18,213,233 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	6	18,004,777 - 18,012,193 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	17,920,174 - 17,927,597 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	18,234,326 - 18,243,209 (+)	NCBI		UU_Cfam_GSD_1.0

ALDOA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	30,053,151 - 30,070,414 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	30,064,164 - 30,072,207 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p14 Ensembl	16	30,053,090 - 30,070,420 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p14 Ensembl	16	30,064,164 - 30,070,457 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	30,064,472 - 30,081,735 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	29,971,992 - 29,989,236 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	29,983,100 - 29,989,235	NCBI
Celera	16	72,713,985 - 72,731,229 (-)	NCBI		Celera
Cytogenetic Map	16	p11.2	NCBI
HuRef	16	27,725,968 - 27,743,009 (+)	NCBI		HuRef
CHM1_1	16	31,280,168 - 31,297,498 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	30,335,801 - 30,353,059 (+)	NCBI		T2T-CHM13v2.0

Aldoa
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	126,394,406 - 126,399,537 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	126,394,406 - 126,399,923 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	126,795,234 - 126,800,994 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	126,795,234 - 126,800,751 (-)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	7	126,800,790 - 126,809,108 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	133,938,748 - 133,943,961 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	126,586,384 - 126,590,331 (-)	NCBI		MGSCv36	mm8
Celera	7	126,642,610 - 126,647,822 (-)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	69.25	NCBI

Aldoart2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	78,674,945 - 78,676,635 (+)	NCBI		GRCr8
mRatBN7.2	6	72,939,821 - 72,941,511 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	72,939,788 - 72,941,709 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	73,361,318 - 73,363,008 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	73,667,686 - 73,669,376 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	73,095,184 - 73,096,873 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	76,349,362 - 76,351,052 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	76,349,362 - 76,351,051 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	85,883,180 - 85,884,870 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	75,812,016 - 75,813,706 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	75,815,141 - 75,816,831 (+)	NCBI
Celera	6	71,781,674 - 71,783,364 (+)	NCBI		Celera
Cytogenetic Map	6	q23	NCBI

Aldoa
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955493	6,904,091 - 6,908,959 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955493	6,904,931 - 6,910,682 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100995352
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	30,796,888 - 30,814,367 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	35,411,499 - 35,428,994 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	16	30,428,190 - 30,444,910 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

Aldoa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	124,320,230 - 124,326,099 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	12,418,090 - 12,422,689 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	12,418,090 - 12,423,959 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC103230584
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	26,588,932 - 26,606,722 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	26,588,868 - 26,592,112 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	2,932,348 - 2,947,575 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Aldoa
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624782	13,183,924 - 13,189,286 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LOC102157295
64 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014114502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038478655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038478656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038478657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038478659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038539898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038539899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038539900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038539901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038539902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038539903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038603983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038603984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038603985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038603986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038668702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038668703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038668704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038668705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_014114502 ⟹ XP_013969977

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	18,070,841 - 18,077,265 (+)	NCBI
Dog10K_Boxer_Tasha	6	19,649,469 - 19,655,895 (+)	NCBI

Sequence:

show sequence

GACAGGGAAAAGTCACATTTGGGGAATAGGATAGTGTAATCCTAATGACTCTCTACCCCCCATT
TGGTGGCTGCTCCTCCCCTCTCATCTCAGACACCTCTGCTGTCCCCCCTTGGTATTTCTGTGTT
CCTGGACCCGTGGCCCCTCCCACCTCCTTGTCACCCCTTCCTCCTGTGCTTGTCCAGGCCTCCT
CTAGCCCGTGGAATCCAACCCCGGCTTCCGTCAGCAGTCCTTCCTTGCTGCTCCCCATCCCTGC
CATCGTGTTCATCGCTGTGGGCATCTATTTGTTGCTGCTCGGCGTAGTGCTGCTGATTAGGCAC
TGCCTGCTGGCCCAGGGCTGCTGCACAGACTGCAGCTCCCCCTGCAGGAAGCAAGGCGCCTCCA
GGCCCCAGGACTGTTGCTGGACCTGTGCAGAAGCCTGCGATTTCCCTCTGCCTAGCCCAGCCCA
CTGCCTGGATGCCTGCTGCCCCCAGCCCACCGAAGCTATCCCTGTGCAAAGATTGATTTCTTTT
GCCAACTTCTGAGGGCTGGATTTCCAAGGAAATTCTTCTGAAGTACGG

hide sequence

RefSeq Acc Id:

XM_022419891 ⟹ XP_022275599

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	18,070,675 - 18,071,771 (+)	NCBI
Dog10K_Boxer_Tasha	6	19,648,878 - 19,650,403 (+)	NCBI

Sequence:

show sequence

GTTGGAAGATATCTAGGGGCCAGTAATGTGGCCTGAGGGATGGCAACGTGGTGCAGAGGAATCA
GAGATGATAGATATGTATGGAGAAGCATTCTGAGCGGAAGATCAACAAGTCTTGGAAAGTTCTC
CAATGACCAACAGGCCTCCTCTAGCCCGTGGAATCCAACCCCGGCTTCCGTCAGCAGTCCTTCC
TTGCTGCTCCCCATCCCTGCCATCGTGTTCATCGCTGTGGGCATCTATTTGTTGCTGCTCGGCG
TAGTGCTGCTGATTAGGCACTGCCTGCTGGCCCAGGGCTGCTGCACAGACTGCAGCTCCCCCTG
CAGGAAGCAAGGCGCCTCCAGGCCCCAGGACTGTTGCTGGACCTGTGCAGAAGCCTGCGATTTC
CCTCTGCCTAGCCCAGCCCACTGCCTGGATGCCTGCTGCCCCCAGCCCACCGAAGCTGTGAGTT
CTCCTCCCAGCCCTGACCCCCTGAACCCTGACCTGGACACTCTCCGCACATTCTTTTGTTGGTG
GTGTTCAACAACACTGATTGCTGAGCACCTACTCTGGGCTGGGCCCAGTTCCAGAGGACTGGGT
TGGTTGGAGACAGCCAAAGACAGCATAAACTTGGAGAGAAGAAAACAGGGTGGCAGCTGGGACG
GGTGTGTAACATGGAGGGCATACAATGGCTTCTGAAAATGGTGGTTAAAAGAGAAAACAACCCT
G

hide sequence

RefSeq Acc Id:

XM_022419892 ⟹ XP_022275600

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	18,070,855 - 18,076,916 (+)	NCBI
Dog10K_Boxer_Tasha	6	19,649,481 - 19,655,545 (+)	NCBI

Sequence:

show sequence

ACATTTGGGGAATAGGATAGTGTAATCCTAATGACTCTCTACCCCCCATTTGGTGGCTGCTCCT
CCCCTCTCATCTCAGACACCTCTGCTGTCCCCCCTTGGTATTTCTGTGTTCCTGGACCCGTGGC
CCCTCCCACCTCCTTGTCACCCCTTCCTCCTGTGCTTGTCCAGGCCTCCTCTAGCCCGTGGAAT
CCAACCCCGGCTTCCGTCAGCAGTCCTTCCTTGCTGCTCCCCATCCCTGCCATCGTGTTCATCG
CTGTGGGCATCTATTTGTTGCTGCTCGGCGTAGTGCTGCTGATTAGGCACTGCCTGCTGGCCCA
GGGCTGCTGCACAGACTGCAGCTCCCCCTGCAGGAAGCAAGGCGCCTCCAGGCCCCAGGACTGT
TGCTGGACCTGTGCAGAAGCCTGCGATTTCCCTCTGCCTAGCCCAGCCCACTGCCTGGATGCCT
GCTGCCCCCAGCCCACCGAAGCTGGCTGGGGCCCTCGCTGCCCTCGCTGCTGCCCACTCTGTGA
CTGTGCTTGTGCGTGCCAACTTCCTGACTGCCAGAGCCTCAACTGTCTCTGCTTCGAGATCAAG
CTCCGATGAAGATCCAGACTTCTTGCCCCTTGGAGAGTGGCCAGCCCCCGGGGCCACCAAGCCC
CCATCCCTGATGAGCCTCCAGGCACTTTTCTCCAGGCCACTGGAACCACAGATGGCCTGCTCAG
CTCCTCCCCCTGGGAACCAGCAGTGGAGAGCCTGGCTCCCTGCAGAGCAGGACTCAGGGAGCCC
TTGGCCAGTTGGACCGAAGCCCCTTTGGAGGGCCAGGAGAGAGAGGGGCTAGTGCTCTGACACG
AGCCTCTGCCTGCCTCTCCCCTCCCCACATA

hide sequence

RefSeq Acc Id:

XM_022419893 ⟹ XP_022275601

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	18,069,839 - 18,071,771 (+)	NCBI
Dog10K_Boxer_Tasha	6	19,648,461 - 19,650,403 (+)	NCBI

Sequence:

show sequence

AATCCCCATGGCAACGGCCTGAAGCAGCGGGAGCTCCTGGGCGGTGCGGCCGCCGCGGCCCATT
GGACGAGCGCGGCGCGGAATCCGCGAACTGGCCGTGGCCGGGAGAGAGCAGCTCCTGGACTGAC
TGGCCCTGTCCTGACCCATGGACGCCTCCTCTAGCCCGTGGAATCCAACCCCGGCTTCCGTCAG
CAGTCCTTCCTTGCTGCTCCCCATCCCTGCCATCGTGTTCATCGCTGTGGGCATCTATTTGTTG
CTGCTCGGCGTAGTGCTGCTGATTAGGCACTGCCTGCTGGCCCAGGGCTGCTGCACAGACTGCA
GCTCCCCCTGCAGGAAGCAAGGCGCCTCCAGGCCCCAGGACTGTTGCTGGACCTGTGCAGAAGC
CTGCGATTTCCCTCTGCCTAGCCCAGCCCACTGCCTGGATGCCTGCTGCCCCCAGCCCACCGAA
GCTGTGAGTTCTCCTCCCAGCCCTGACCCCCTGAACCCTGACCTGGACACTCTCCGCACATTCT
TTTGTTGGTGGTGTTCAACAACACTGATTGCTGAGCACCTACTCTGGGCTGGGCCCAGTTCCAG
AGGACTGGGTTGGTTGGAGACAGCCAAAGACAGCATAAACTTGGAGAGAAGAAAACAGGGTGGC
AGCTGGGACGGGTGTGTAACATGGAGGGCATACAATGGCTTCTGAAAATGGTGGTTAAAAGAGA
AAACAACCCTG

hide sequence

RefSeq Acc Id:

XM_038478655 ⟹ XP_038334583

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	18,005,191 - 18,006,716 (+)	NCBI

RefSeq Acc Id:

XM_038478656 ⟹ XP_038334584

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	18,005,794 - 18,011,843 (+)	NCBI

RefSeq Acc Id:

XM_038478657 ⟹ XP_038334585

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	18,004,777 - 18,006,716 (+)	NCBI

RefSeq Acc Id:

XM_038478659 ⟹ XP_038334587

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	18,005,782 - 18,012,193 (+)	NCBI

RefSeq Acc Id:

XM_038539898 ⟹ XP_038395826

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	18,236,207 - 18,237,732 (+)	NCBI

RefSeq Acc Id:

XM_038539899 ⟹ XP_038395827

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	18,236,810 - 18,242,859 (+)	NCBI

RefSeq Acc Id:

XM_038539900 ⟹ XP_038395828

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	18,235,794 - 18,237,732 (+)	NCBI

RefSeq Acc Id:

XM_038539901 ⟹ XP_038395829

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	18,234,326 - 18,243,209 (+)	NCBI

RefSeq Acc Id:

XM_038539902 ⟹ XP_038395830

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	18,235,472 - 18,243,209 (+)	NCBI

RefSeq Acc Id:

XM_038539903 ⟹ XP_038395831

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	18,236,798 - 18,243,209 (+)	NCBI

RefSeq Acc Id:

XM_038603983 ⟹ XP_038459911

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	17,920,587 - 17,922,112 (+)	NCBI

RefSeq Acc Id:

XM_038603984 ⟹ XP_038459912

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	17,921,190 - 17,927,248 (+)	NCBI

RefSeq Acc Id:

XM_038603985 ⟹ XP_038459913

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	17,920,174 - 17,922,112 (+)	NCBI

RefSeq Acc Id:

XM_038603986 ⟹ XP_038459914

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	17,921,178 - 17,927,597 (+)	NCBI

RefSeq Acc Id:

XM_038668702 ⟹ XP_038524630

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	18,206,229 - 18,207,754 (+)	NCBI

RefSeq Acc Id:

XM_038668703 ⟹ XP_038524631

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	18,206,832 - 18,212,883 (+)	NCBI

RefSeq Acc Id:

XM_038668704 ⟹ XP_038524632

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	18,205,816 - 18,207,754 (+)	NCBI

RefSeq Acc Id:

XM_038668705 ⟹ XP_038524633

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	18,206,820 - 18,213,233 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013969977	(Get FASTA)	NCBI Sequence Viewer
	XP_022275599	(Get FASTA)	NCBI Sequence Viewer
	XP_022275600	(Get FASTA)	NCBI Sequence Viewer
	XP_022275601	(Get FASTA)	NCBI Sequence Viewer
	XP_038334583	(Get FASTA)	NCBI Sequence Viewer
	XP_038334584	(Get FASTA)	NCBI Sequence Viewer
	XP_038334585	(Get FASTA)	NCBI Sequence Viewer
	XP_038334587	(Get FASTA)	NCBI Sequence Viewer
	XP_038395826	(Get FASTA)	NCBI Sequence Viewer
	XP_038395827	(Get FASTA)	NCBI Sequence Viewer
	XP_038395828	(Get FASTA)	NCBI Sequence Viewer
	XP_038395829	(Get FASTA)	NCBI Sequence Viewer
	XP_038395830	(Get FASTA)	NCBI Sequence Viewer
	XP_038395831	(Get FASTA)	NCBI Sequence Viewer
	XP_038459911	(Get FASTA)	NCBI Sequence Viewer
	XP_038459912	(Get FASTA)	NCBI Sequence Viewer
	XP_038459913	(Get FASTA)	NCBI Sequence Viewer
	XP_038459914	(Get FASTA)	NCBI Sequence Viewer
	XP_038524630	(Get FASTA)	NCBI Sequence Viewer
	XP_038524631	(Get FASTA)	NCBI Sequence Viewer
	XP_038524632	(Get FASTA)	NCBI Sequence Viewer
	XP_038524633	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000047818.2

RefSeq Acc Id:	XP_013969977 ⟸ XM_014114502
- Peptide Label:	isoform X4
- Sequence:	show sequence MTLYPPFGGCSSPLISDTSAVPPWYFCVPGPVAPPTSLSPLPPVLVQASSSPWNPTPASVSSPS LLLPIPAIVFIAVGIYLLLLGVVLLIRHCLLAQGCCTDCSSPCRKQGASRPQDCCWTCAEACDF PLPSPAHCLDACCPQPTEAIPVQRLISFANF hide sequence

RefSeq Acc Id:	XP_022275601 ⟸ XM_022419893
- Peptide Label:	isoform X3
- Sequence:	show sequence MDASSSPWNPTPASVSSPSLLLPIPAIVFIAVGIYLLLLGVVLLIRHCLLAQGCCTDCSSPCRK QGASRPQDCCWTCAEACDFPLPSPAHCLDACCPQPTEAVSSPPSPDPLNPDLDTLRTFFCWWCS TTLIAEHLLWAGPSSRGLGWLETAKDSINLERRKQGGSWDGCVTWRAYNGF hide sequence

RefSeq Acc Id:

XP_022275599 ⟸ XM_022419891

- Peptide Label:

isoform X1

- Sequence:

show sequence

MATWCRGIRDDRYVWRSILSGRSTSLGKFSNDQQASSSPWNPTPASVSSPSLLLPIPAIVFIAV
GIYLLLLGVVLLIRHCLLAQGCCTDCSSPCRKQGASRPQDCCWTCAEACDFPLPSPAHCLDACC
PQPTEAVSSPPSPDPLNPDLDTLRTFFCWWCSTTLIAEHLLWAGPSSRGLGWLETAKDSINLER
RKQGGSWDGCVTWRAYNGF

hide sequence

RefSeq Acc Id:	XP_022275600 ⟸ XM_022419892
- Peptide Label:	isoform X2
- Sequence:	show sequence MTLYPPFGGCSSPLISDTSAVPPWYFCVPGPVAPPTSLSPLPPVLVQASSSPWNPTPASVSSPS LLLPIPAIVFIAVGIYLLLLGVVLLIRHCLLAQGCCTDCSSPCRKQGASRPQDCCWTCAEACDF PLPSPAHCLDACCPQPTEAGWGPRCPRCCPLCDCACACQLPDCQSLNCLCFEIKLR hide sequence

RefSeq Acc Id:	XP_038334585 ⟸ XM_038478657
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038334583 ⟸ XM_038478655
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038334587 ⟸ XM_038478659
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038334584 ⟸ XM_038478656
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038459913 ⟸ XM_038603985
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038459911 ⟸ XM_038603983
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038459914 ⟸ XM_038603986
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038459912 ⟸ XM_038603984
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038524632 ⟸ XM_038668704
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038524630 ⟸ XM_038668702
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038524633 ⟸ XM_038668705
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038524631 ⟸ XM_038668703
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038395829 ⟸ XM_038539901
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038395830 ⟸ XM_038539902
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038395828 ⟸ XM_038539900
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038395826 ⟸ XM_038539898
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038395831 ⟸ XM_038539903
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038395827 ⟸ XM_038539899
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000042952	UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000087348.2	UniProtKB/TrEMBL
NCBI Gene	LOC102157295	ENTREZGENE
UniProt	A0A8P0T0U7_CANLF	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-01-12	LOC102157295	atherin	LOC102157295	keratin-associated protein 10-10-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - PID (archival)