DSEL (dermatan sulfate epimerase like) - Rat Genome Database

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Gene: DSEL (dermatan sulfate epimerase like) Pan paniscus
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Symbol: DSEL
Name: dermatan sulfate epimerase like
RGD ID: 12047224
Description: ENCODES a protein that exhibits chondroitin-glucuronate 5-epimerase activity (ortholog); INVOLVED IN obsolete chondroitin sulfate metabolic process (ortholog); obsolete dermatan sulfate metabolic process (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dermatan sulfate epimerase-like; dermatan-sulfate epimerase-like protein-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21785,023,140 - 85,042,589 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11870,694,543 - 70,734,557 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01860,880,241 - 60,890,372 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11864,183,644 - 64,191,363 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DSELBonobochromosome 18q deletion syndrome  ISODSEL (Homo sapiens)8554872ClinVar Annotator: match by term: Monosomy 18q and deletion 18qClinVarPMID:25741868 and PMID:31690835
DSELBonobointestinal volvulus  ISODSEL (Homo sapiens)8554872ClinVar Annotator: match by term: INTESTINAL MALROTATION and FAMILIALClinVarPMID:25741868
DSELBonoboNeurodevelopmental Disorders  ISODSEL (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
DSELBonoboVolvulus Of Midgut  ISODSEL (Homo sapiens)8554872ClinVar Annotator: match by term: Volvulus of midgutClinVarPMID:25741868


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DSELBonoboobsolete chondroitin sulfate metabolic process acts_upstream_of_or_withinISOMGI:55838729068941 PMID:22496542MGIPMID:22496542
DSELBonoboobsolete dermatan sulfate metabolic process acts_upstream_of_or_withinISOMGI:55838729068941 PMID:22496542MGIPMID:22496542

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DSELBonobochondroitin-glucuronate 5-epimerase activity enablesISOMGI:55838729068941 PMID:22496542MGIPMID:22496542

PMID:22301074   PMID:30032202  



DSEL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21785,023,140 - 85,042,589 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11870,694,543 - 70,734,557 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01860,880,241 - 60,890,372 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11864,183,644 - 64,191,363 (-)NCBIpanpan1.1PanPan1.1panPan2
DSEL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381867,506,587 - 67,516,720 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1867,506,587 - 67,516,720 (-)EnsemblGRCh38hg38GRCh38
GRCh371865,173,824 - 65,183,957 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361863,324,799 - 63,334,947 (-)NCBINCBI36Build 36hg18NCBI36
Build 341863,324,798 - 63,334,947NCBI
Celera1862,023,814 - 62,033,959 (-)NCBICelera
Cytogenetic Map18q22.1NCBI
HuRef1861,894,294 - 61,904,440 (-)NCBIHuRef
CHM1_11865,169,183 - 65,179,327 (-)NCBICHM1_1
T2T-CHM13v2.01867,725,180 - 67,735,312 (-)NCBIT2T-CHM13v2.0
Dsel
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391111,786,431 - 111,792,782 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1111,786,432 - 111,792,648 (-)EnsemblGRCm39 Ensembl
GRCm381111,858,701 - 111,865,052 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1111,858,702 - 111,864,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv371113,755,279 - 113,761,495 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361113,686,249 - 113,692,465 (-)NCBIMGSCv36mm8
Celera1114,603,034 - 114,609,250 (-)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map150.84NCBI
Dsel
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813194,738 - 200,959 (-)NCBIGRCr8
mRatBN7.213186,413 - 192,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13175,805 - 192,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13148,503 - 154,675 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0131,513,216 - 1,519,388 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013138,815 - 144,987 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,942,384 - 1,948,563 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,942,499 - 1,946,508 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0131,936,171 - 1,941,861 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41319,394,146 - 19,398,749 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11319,397,161 - 19,402,441 (+)NCBI
Celera131,174,831 - 1,181,003 (-)NCBICelera
Cytogenetic Map13p13NCBI
Dsel
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540251,017,963 - 51,023,508 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540251,017,963 - 51,023,508 (-)NCBIChiLan1.0ChiLan1.0
DSEL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1110,344,468 - 10,366,936 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha111,370,398 - 11,383,157 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0110,192,758 - 10,205,515 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl110,193,072 - 10,216,657 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1110,228,535 - 10,241,280 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0110,169,612 - 10,178,063 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0110,374,160 - 10,382,631 (+)NCBIUU_Cfam_GSD_1.0
DSEL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1154,919,550 - 154,935,561 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11154,919,331 - 154,937,484 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DSEL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11812,227,239 - 12,237,090 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1812,228,947 - 12,232,615 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606013,535,421 - 13,548,784 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dsel
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479213,671,194 - 13,677,449 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479213,671,150 - 13,677,777 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_003827283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_003827283   ⟹   XP_003827331
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21785,023,140 - 85,042,589 (-)NCBI
NHGRI_mPanPan11870,694,543 - 70,734,557 (-)NCBI
Mhudiblu_PPA_v01860,880,241 - 60,890,372 (-)NCBI
PanPan1.11864,183,644 - 64,191,363 (-)NCBI
Sequence:
Protein RefSeqs XP_003827331 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_003827331   ⟸   XM_003827283
- Sequence:



Database
Acc Id
Source(s)
NCBI Gene DSEL ENTREZGENE


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-13 DSEL  dermatan sulfate epimerase like    dermatan sulfate epimerase-like  Symbol and/or name change 5135510 APPROVED