DSEL (dermatan sulfate epimerase like) - Rat Genome Database

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Gene: DSEL (dermatan sulfate epimerase like) Pan paniscus
Analyze
Symbol: DSEL
Name: dermatan sulfate epimerase like
RGD ID: 12047224
Description: ENCODES a protein that exhibits chondroitin-glucuronate 5-epimerase activity (ortholog); INVOLVED IN chondroitin sulfate metabolic process (ortholog); dermatan sulfate metabolic process (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); genetic disease (ortholog); intestinal volvulus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dermatan sulfate epimerase-like; dermatan-sulfate epimerase-like protein-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21785,023,140 - 85,042,589 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11870,694,543 - 70,734,557 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01860,880,241 - 60,890,372 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11864,183,644 - 64,191,363 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DSEL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21785,023,140 - 85,042,589 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11870,694,543 - 70,734,557 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01860,880,241 - 60,890,372 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11864,183,644 - 64,191,363 (-)NCBIpanpan1.1PanPan1.1panPan2
DSEL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381867,506,587 - 67,516,720 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1867,506,587 - 67,516,720 (-)EnsemblGRCh38hg38GRCh38
GRCh371865,173,824 - 65,183,957 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361863,324,799 - 63,334,947 (-)NCBINCBI36Build 36hg18NCBI36
Build 341863,324,798 - 63,334,947NCBI
Celera1862,023,814 - 62,033,959 (-)NCBICelera
Cytogenetic Map18q22.1NCBI
HuRef1861,894,294 - 61,904,440 (-)NCBIHuRef
CHM1_11865,169,183 - 65,179,327 (-)NCBICHM1_1
T2T-CHM13v2.01867,725,180 - 67,735,312 (-)NCBIT2T-CHM13v2.0
Dsel
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391111,786,431 - 111,792,782 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1111,786,432 - 111,792,648 (-)EnsemblGRCm39 Ensembl
GRCm381111,858,701 - 111,865,052 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1111,858,702 - 111,864,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv371113,755,279 - 113,761,495 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361113,686,249 - 113,692,465 (-)NCBIMGSCv36mm8
Celera1114,603,034 - 114,609,250 (-)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map150.84NCBI
Dsel
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813194,738 - 200,959 (-)NCBIGRCr8
mRatBN7.213186,413 - 192,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13175,805 - 192,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13148,503 - 154,675 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0131,513,216 - 1,519,388 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013138,815 - 144,987 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,942,384 - 1,948,563 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,942,499 - 1,946,508 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0131,936,171 - 1,941,861 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41319,394,146 - 19,398,749 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11319,397,161 - 19,402,441 (+)NCBI
Celera131,174,831 - 1,181,003 (-)NCBICelera
Cytogenetic Map13p13NCBI
Dsel
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540251,017,963 - 51,023,508 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540251,017,963 - 51,023,508 (-)NCBIChiLan1.0ChiLan1.0
DSEL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1110,344,468 - 10,366,936 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha111,370,398 - 11,383,157 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0110,192,758 - 10,205,515 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl110,193,072 - 10,216,657 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1110,228,535 - 10,241,280 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0110,169,612 - 10,178,063 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0110,374,160 - 10,382,631 (+)NCBIUU_Cfam_GSD_1.0
DSEL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1154,919,550 - 154,935,561 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11154,919,331 - 154,937,484 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DSEL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11812,227,239 - 12,237,090 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1812,228,947 - 12,232,615 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606013,535,421 - 13,548,784 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dsel
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479213,671,194 - 13,677,449 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479213,671,150 - 13,677,777 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003827283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003827283   ⟹   XP_003827331
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21785,023,140 - 85,042,589 (-)NCBI
NHGRI_mPanPan11870,694,543 - 70,734,557 (-)NCBI
Mhudiblu_PPA_v01860,880,241 - 60,890,372 (-)NCBI
PanPan1.11864,183,644 - 64,191,363 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003827331 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_003827331   ⟸   XM_003827283
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene DSEL ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-13 DSEL  dermatan sulfate epimerase like    dermatan sulfate epimerase-like  Symbol and/or name change 5135510 APPROVED