PTGDR (prostaglandin D2 receptor) - Rat Genome Database

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Gene: PTGDR (prostaglandin D2 receptor) Pan paniscus
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Symbol: PTGDR
Name: prostaglandin D2 receptor
RGD ID: 12024852
Description: ENCODES a protein that exhibits prostaglandin D receptor activity (ortholog); prostaglandin J receptor activity (ortholog); INVOLVED IN adenosine metabolic process (ortholog); cellular response to prostaglandin D stimulus (ortholog); inflammatory response (ortholog); PARTICIPATES IN eicosanoid signaling pathway; prostaglandin D2 signaling pathway; ASSOCIATED WITH asthma (ortholog); COVID-19 (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21553,398,345 - 53,410,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11452,614,856 - 52,626,691 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01432,863,852 - 32,873,492 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11451,149,155 - 51,158,158 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1451,149,155 - 51,158,161 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
asthma  (ISO)
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PTGDR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21553,398,345 - 53,410,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11452,614,856 - 52,626,691 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01432,863,852 - 32,873,492 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11451,149,155 - 51,158,158 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1451,149,155 - 51,158,161 (+)Ensemblpanpan1.1panPan2
PTGDR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381452,267,698 - 52,280,914 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1452,267,698 - 52,276,724 (+)EnsemblGRCh38hg38GRCh38
GRCh371452,734,416 - 52,743,442 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361451,804,181 - 51,813,192 (+)NCBINCBI36Build 36hg18NCBI36
Build 341451,804,180 - 51,813,191NCBI
Celera1432,602,359 - 32,611,369 (+)NCBICelera
Cytogenetic Map14q22.1NCBI
HuRef1432,895,105 - 32,904,115 (+)NCBIHuRef
CHM1_11452,673,595 - 52,682,607 (+)NCBICHM1_1
T2T-CHM13v2.01446,474,808 - 46,488,025 (+)NCBIT2T-CHM13v2.0
Ptgdr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391445,088,692 - 45,096,832 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1445,088,692 - 45,096,832 (-)EnsemblGRCm39 Ensembl
GRCm381444,851,235 - 44,859,375 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1444,851,235 - 44,859,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv371445,470,910 - 45,479,050 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361443,773,112 - 43,781,252 (-)NCBIMGSCv36mm8
Celera1441,045,205 - 41,053,310 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1422.59NCBI
Ptgdr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81519,790,499 - 19,797,873 (+)NCBIGRCr8
mRatBN7.21517,360,304 - 17,367,679 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1517,360,304 - 17,367,679 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1519,534,419 - 19,541,726 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01520,492,893 - 20,500,200 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01518,747,817 - 18,755,124 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01519,195,606 - 19,196,508 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01523,162,010 - 23,162,912 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41519,345,555 - 19,352,929 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11519,345,554 - 19,352,929 (+)NCBI
Celera1517,315,866 - 17,323,221 (+)NCBICelera
Cytogenetic Map15p14NCBI
Ptgdr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540910,801,328 - 10,810,066 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540910,801,370 - 10,810,161 (-)NCBIChiLan1.0ChiLan1.0
PTGDR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1828,480,446 - 28,491,331 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl828,480,478 - 28,488,855 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha828,232,194 - 28,242,277 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0828,657,597 - 28,667,689 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl828,657,612 - 28,665,988 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1828,326,721 - 28,336,803 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0828,387,594 - 28,397,684 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0828,734,940 - 28,745,039 (+)NCBIUU_Cfam_GSD_1.0
Ptgdr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864076,707,144 - 76,714,871 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366972,481,340 - 2,488,868 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366972,481,340 - 2,488,868 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTGDR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1181,955,339 - 181,966,178 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11181,953,506 - 182,006,375 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21202,227,952 - 202,279,018 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTGDR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12429,347,796 - 29,359,783 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2429,350,749 - 29,359,754 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605317,618,199 - 17,627,555 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptgdr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473116,777,678 - 16,785,130 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473116,776,050 - 16,785,178 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003831713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000051464   ⟹   ENSPPAP00000028616
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1451,149,155 - 51,158,161 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000051468   ⟹   ENSPPAP00000028620
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1451,149,251 - 51,150,931 (+)Ensembl
RefSeq Acc Id: XM_003831713   ⟹   XP_003831761
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21553,398,345 - 53,410,180 (+)NCBI
NHGRI_mPanPan11452,614,856 - 52,626,691 (+)NCBI
Mhudiblu_PPA_v01432,863,852 - 32,873,492 (+)NCBI
PanPan1.11451,149,155 - 51,158,158 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003831761 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000028616.1
  ENSPPAP00000028620.1
RefSeq Acc Id: XP_003831761   ⟸   XM_003831713
- UniProtKB: A0A2R9BPP7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000028620   ⟸   ENSPPAT00000051468
Ensembl Acc Id: ENSPPAP00000028616   ⟸   ENSPPAT00000051464

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037353 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051464.1 UniProtKB/TrEMBL
  ENSPPAT00000051468.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Pglndn_D_rcpt UniProtKB/TrEMBL
  Prostanoid_rcpt UniProtKB/TrEMBL
KEGG Report pps:100969508 UniProtKB/TrEMBL
NCBI Gene PTGDR ENTREZGENE
PANTHER PTHR11866 UniProtKB/TrEMBL
  PTHR11866:SF14 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS PROSTANOIDR UniProtKB/TrEMBL
  PRSTNOIDDPR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A2R9BG62_PANPA UniProtKB/TrEMBL
  A0A2R9BPP7 ENTREZGENE, UniProtKB/TrEMBL