Ptgdr (prostaglandin D2 receptor) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ptgdr (prostaglandin D2 receptor) Ictidomys tridecemlineatus
Analyze
Symbol: Ptgdr
Name: prostaglandin D2 receptor
RGD ID: 12524804
Description: ENCODES a protein that exhibits prostaglandin D receptor activity (ortholog); prostaglandin J receptor activity (ortholog); INVOLVED IN adenosine metabolic process (ortholog); cellular response to prostaglandin D stimulus (ortholog); inflammatory response (ortholog); PARTICIPATES IN eicosanoid signaling pathway; prostaglandin D2 signaling pathway; ASSOCIATED WITH asthma (ortholog); COVID-19 (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864076,707,144 - 76,714,871 (-)NCBI
SpeTri2.0NW_0049366972,481,340 - 2,488,868 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
asthma  (ISO)
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Ptgdr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864076,707,144 - 76,714,871 (-)NCBI
SpeTri2.0NW_0049366972,481,340 - 2,488,868 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTGDR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1452,267,698 - 52,276,724 (+)EnsemblGRCh38hg38GRCh38
GRCh381452,267,256 - 52,276,724 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371452,734,416 - 52,743,442 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361451,804,181 - 51,813,192 (+)NCBINCBI36hg18NCBI36
Build 341451,804,180 - 51,813,191NCBI
Celera1432,602,359 - 32,611,369 (+)NCBI
Cytogenetic Map14q22.1NCBI
HuRef1432,895,105 - 32,904,115 (+)NCBIHuRef
CHM1_11452,673,595 - 52,682,607 (+)NCBICHM1_1
Ptgdr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391445,088,692 - 45,096,832 (-)NCBIGRCm39mm39
GRCm39 Ensembl1445,088,692 - 45,096,832 (-)Ensembl
GRCm381444,851,235 - 44,859,375 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1444,851,235 - 44,859,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv371445,470,910 - 45,479,050 (-)NCBIGRCm37mm9NCBIm37
MGSCv361443,773,112 - 43,781,252 (-)NCBImm8
Celera1441,045,205 - 41,053,310 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1422.59NCBI
Ptgdr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21517,360,304 - 17,367,679 (+)NCBI
Rnor_6.01519,195,606 - 19,196,508 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01523,162,010 - 23,162,912 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41519,345,555 - 19,352,929 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11519,345,554 - 19,352,929 (+)NCBI
Celera1517,315,866 - 17,323,221 (+)NCBICelera
Cytogenetic Map15p14NCBI
Ptgdr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540910,801,328 - 10,810,066 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540910,801,370 - 10,810,161 (-)NCBIChiLan1.0ChiLan1.0
PTGDR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11451,149,155 - 51,158,158 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1451,149,155 - 51,158,161 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01432,863,852 - 32,873,492 (+)NCBIMhudiblu_PPA_v0panPan3
PTGDR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1828,480,446 - 28,491,331 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl828,480,478 - 28,488,855 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha828,232,194 - 28,242,277 (+)NCBI
ROS_Cfam_1.0828,657,597 - 28,667,689 (+)NCBI
UMICH_Zoey_3.1828,326,721 - 28,336,803 (+)NCBI
UNSW_CanFamBas_1.0828,387,594 - 28,397,684 (+)NCBI
UU_Cfam_GSD_1.0828,734,940 - 28,745,039 (+)NCBI
PTGDR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12429,347,796 - 29,359,783 (+)NCBI
ChlSab1.1 Ensembl2429,350,749 - 29,359,754 (+)Ensembl
Vero_WHO_p1.0NW_02366605317,618,199 - 17,627,555 (+)NCBI
Ptgdr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473116,776,050 - 16,785,178 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005337979   ⟹   XP_005338036
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864076,707,144 - 76,714,871 (-)NCBI
SpeTri2.0NW_0049366972,481,340 - 2,488,868 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005338036 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3261433 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005338036   ⟸   XM_005337979
- UniProtKB: I3NCU3 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G_PROTEIN_RECEP_F1_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024233 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000022190 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025124 UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Pglndn_D_rcpt UniProtKB/TrEMBL
  Prostanoid_rcpt UniProtKB/TrEMBL
NCBI Gene Ptgdr ENTREZGENE
PANTHER PTHR11866 UniProtKB/TrEMBL
  PTHR11866:SF14 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS PROSTANOIDR UniProtKB/TrEMBL
  PRSTNOIDDPR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
UniProt I3NCU3 ENTREZGENE, UniProtKB/TrEMBL