Symbol:
CIITA
Name:
class II major histocompatibility complex transactivator
RGD ID:
11983652
Description:
ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); histone deacetylase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cellular response to electrical stimulus (ortholog); cellular response to exogenous dsRNA (ortholog); cellular response to type II interferon (ortholog); ASSOCIATED WITH acute kidney tubular necrosis (ortholog); Addison's disease (ortholog); Albuminuria (ortholog); FOUND IN cell surface (ortholog); PML body (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
MHC class II transactivator
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 18 11,426,662 - 11,492,167 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 16 15,201,913 - 15,267,425 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 16 9,819,440 - 9,885,379 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 16 11,041,434 - 11,090,485 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 16 11,041,434 - 11,090,485 (+) Ensembl panpan1.1 panPan2
JBrowse:
View Region in Genome Browser (JBrowse)
Model
CIITA Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 18 11,426,662 - 11,492,167 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 16 15,201,913 - 15,267,425 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 16 9,819,440 - 9,885,379 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 16 11,041,434 - 11,090,485 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 16 11,041,434 - 11,090,485 (+) Ensembl panpan1.1 panPan2
CIITA Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 16 10,866,206 - 10,943,021 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 16 10,866,222 - 10,943,021 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 16 10,971,055 - 11,030,251 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 16 10,878,556 - 10,926,341 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 16 10,878,539 - 10,933,676 NCBI Celera 16 11,140,481 - 11,188,432 (+) NCBI Celera Cytogenetic Map 16 p13.13 NCBI HuRef 16 10,888,898 - 10,936,424 (+) NCBI HuRef CHM1_1 16 10,970,985 - 11,018,760 (+) NCBI CHM1_1 T2T-CHM13v2.0 16 10,902,173 - 10,978,992 (+) NCBI T2T-CHM13v2.0
Ciita Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 16 10,297,877 - 10,348,928 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 16 10,297,923 - 10,346,282 (+) Ensembl GRCm39 Ensembl GRCm38 16 10,480,014 - 10,531,064 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 16 10,480,059 - 10,528,418 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 16 10,488,372 - 10,527,657 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 16 10,401,857 - 10,441,142 (+) NCBI MGSCv36 mm8 Celera 16 11,120,578 - 11,160,248 (+) NCBI Celera Cytogenetic Map 16 A1 NCBI cM Map 16 5.65 NCBI
Ciita Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 10 5,646,854 - 5,694,393 (-) NCBI GRCr8 mRatBN7.2 10 5,139,947 - 5,187,493 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 10 5,140,178 - 5,187,440 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 10 9,836,592 - 9,883,847 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 10 9,357,706 - 9,404,970 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 10 4,995,977 - 5,043,240 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 10 5,212,621 - 5,260,641 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 10 5,213,350 - 5,260,608 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 10 4,036,437 - 4,083,966 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 10 5,087,174 - 5,133,418 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 10 5,087,173 - 5,133,418 (-) NCBI Celera 10 4,158,435 - 4,205,434 (-) NCBI Celera Cytogenetic Map 10 q11 NCBI
Ciita Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955442 7,603,893 - 7,647,624 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955442 7,600,903 - 7,647,619 (-) NCBI ChiLan1.0 ChiLan1.0
CIITA Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 6 31,774,486 - 31,837,025 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 6 31,774,609 - 31,836,820 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 6 33,156,962 - 33,219,510 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 6 31,956,967 - 32,019,399 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 6 31,956,967 - 31,996,000 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 6 31,770,183 - 31,832,926 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 6 31,644,456 - 31,706,901 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 6 32,068,973 - 32,131,721 (-) NCBI UU_Cfam_GSD_1.0
Ciita
CIITA Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 3 32,172,214 - 32,230,780 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 3 32,171,706 - 32,230,775 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 3 33,109,119 - 33,117,697 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CIITA Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 5 10,341,690 - 10,401,988 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 5 10,372,344 - 10,400,451 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666068 19,764,657 - 19,814,384 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Ciita
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSPPAT00000048530 ⟹ ENSPPAP00000025700
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source PanPan1.1 Ensembl 16 11,041,434 - 11,090,485 (+) Ensembl
Ensembl Acc Id:
ENSPPAT00000048537 ⟹ ENSPPAP00000025707
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source PanPan1.1 Ensembl 16 11,041,567 - 11,088,806 (+) Ensembl
Ensembl Acc Id:
ENSPPAT00000048538 ⟹ ENSPPAP00000025708
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source PanPan1.1 Ensembl 16 11,041,567 - 11,075,608 (+) Ensembl
Ensembl Acc Id:
ENSPPAT00000048539 ⟹ ENSPPAP00000025709
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source PanPan1.1 Ensembl 16 11,060,499 - 11,088,806 (+) Ensembl
RefSeq Acc Id:
XM_008960373 ⟹ XP_008958621
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,426,662 - 11,475,418 (+) NCBI NHGRI_mPanPan1 16 15,201,914 - 15,254,581 (+) NCBI Mhudiblu_PPA_v0 16 9,819,440 - 9,868,223 (+) NCBI PanPan1.1 16 11,041,434 - 11,090,485 (+) NCBI
Sequence:
GGTTAGTGATGAGGCTAGTGATGAGGCTGTGTGCTTCTGAGCTGGGCATCCGAAGGCATCCTTGGGGAAGCTGAGGGCACGAGGAGGGGCTGCCAGACTCCGGGAGCTGCTGCCTGGCTGGGATTCCT
hide sequence
RefSeq Acc Id:
XM_008960374 ⟹ XP_008958622
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,428,153 - 11,475,418 (+) NCBI NHGRI_mPanPan1 16 15,203,402 - 15,254,581 (+) NCBI Mhudiblu_PPA_v0 16 9,820,961 - 9,867,712 (+) NCBI PanPan1.1 16 11,043,203 - 11,089,844 (+) NCBI
Sequence:
ACAGACTTGCCGCGGCCCCAGAGCTGGCGGGAGGGAGAGGCCACCAGCAGCGCGCGCGGGAGCC
hide sequence
RefSeq Acc Id:
XM_034939778 ⟹ XP_034795669
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,428,152 - 11,486,879 (+) NCBI NHGRI_mPanPan1 16 15,203,401 - 15,262,138 (+) NCBI Mhudiblu_PPA_v0 16 9,820,960 - 9,879,684 (+) NCBI
RefSeq Acc Id:
XM_034939779 ⟹ XP_034795670
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,428,152 - 11,492,167 (+) NCBI NHGRI_mPanPan1 16 15,203,401 - 15,267,425 (+) NCBI Mhudiblu_PPA_v0 16 9,820,960 - 9,885,379 (+) NCBI
RefSeq Acc Id:
XM_034939780 ⟹ XP_034795671
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,428,152 - 11,486,879 (+) NCBI NHGRI_mPanPan1 16 15,203,401 - 15,262,138 (+) NCBI Mhudiblu_PPA_v0 16 9,820,960 - 9,878,488 (+) NCBI
RefSeq Acc Id:
XM_034939781 ⟹ XP_034795672
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,428,153 - 11,475,418 (+) NCBI NHGRI_mPanPan1 16 15,203,402 - 15,254,581 (+) NCBI Mhudiblu_PPA_v0 16 9,820,961 - 9,867,712 (+) NCBI
RefSeq Acc Id:
XM_034939784 ⟹ XP_034795675
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,428,151 - 11,475,418 (+) NCBI NHGRI_mPanPan1 16 15,203,400 - 15,254,581 (+) NCBI Mhudiblu_PPA_v0 16 9,820,959 - 9,867,712 (+) NCBI
RefSeq Acc Id:
XM_034939785 ⟹ XP_034795676
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,428,149 - 11,475,418 (+) NCBI NHGRI_mPanPan1 16 15,203,399 - 15,254,581 (+) NCBI Mhudiblu_PPA_v0 16 9,820,957 - 9,867,712 (+) NCBI
RefSeq Acc Id:
XM_057300009 ⟹ XP_057155992
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,426,662 - 11,486,879 (+) NCBI NHGRI_mPanPan1 16 15,201,913 - 15,262,138 (+) NCBI
RefSeq Acc Id:
XM_057300010 ⟹ XP_057155993
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,426,662 - 11,486,879 (+) NCBI NHGRI_mPanPan1 16 15,201,913 - 15,262,138 (+) NCBI
RefSeq Acc Id:
XM_063598370 ⟹ XP_063454440
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,428,153 - 11,475,418 (+) NCBI
RefSeq Acc Id:
XM_063598371 ⟹ XP_063454441
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 18 11,428,143 - 11,459,654 (+) NCBI
RefSeq Acc Id:
XP_008958621 ⟸ XM_008960373
- Peptide Label:
isoform X3
- UniProtKB:
A0A2R9BFB3 (UniProtKB/TrEMBL)
- Sequence:
MRCLAPRPAGSYLSEPQGSSQCATMELGPLEGGYLELLNSDADPVCLYHFYDQMDLAGEEEIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIFIEHIGPDEV
hide sequence
RefSeq Acc Id:
XP_008958622 ⟸ XM_008960374
- Peptide Label:
isoform X1
- UniProtKB:
A0A2R9B7Y5 (UniProtKB/TrEMBL)
- Sequence:
MELGPLEGGYLELLNSDADPVCLYHFYDQMDLAGEEEIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIFIEHIGPDEVIGESMEMPAEVGQKSQKRPFPEEL
hide sequence
RefSeq Acc Id:
XP_034795676 ⟸ XM_034939785
- Peptide Label:
isoform X6
- UniProtKB:
A0A2R9BFB3 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_034795675 ⟸ XM_034939784
- Peptide Label:
isoform X5
- UniProtKB:
A0A2R9BFB3 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_034795670 ⟸ XM_034939779
- Peptide Label:
isoform X1
- UniProtKB:
A0A2R9B7Y5 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_034795669 ⟸ XM_034939778
- Peptide Label:
isoform X1
- UniProtKB:
A0A2R9B7Y5 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_034795671 ⟸ XM_034939780
- Peptide Label:
isoform X1
- UniProtKB:
A0A2R9B7Y5 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_034795672 ⟸ XM_034939781
- Peptide Label:
isoform X2
- UniProtKB:
A0A2R9B7Y5 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSPPAP00000025707 ⟸ ENSPPAT00000048537
Ensembl Acc Id:
ENSPPAP00000025708 ⟸ ENSPPAT00000048538
Ensembl Acc Id:
ENSPPAP00000025709 ⟸ ENSPPAT00000048539
Ensembl Acc Id:
ENSPPAP00000025700 ⟸ ENSPPAT00000048530
RefSeq Acc Id:
XP_057155992 ⟸ XM_057300009
- Peptide Label:
isoform X3
- UniProtKB:
A0A2R9BFB3 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_057155993 ⟸ XM_057300010
- Peptide Label:
isoform X4
- UniProtKB:
A0A2R9BFB3 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_063454441 ⟸ XM_063598371
- Peptide Label:
isoform X8
RefSeq Acc Id:
XP_063454440 ⟸ XM_063598370
- Peptide Label:
isoform X7
- UniProtKB:
A0A2R9BFB3 (UniProtKB/TrEMBL)
