SPTSSB (serine palmitoyltransferase small subunit B) - Rat Genome Database

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Gene: SPTSSB (serine palmitoyltransferase small subunit B) Pan paniscus
Analyze
Symbol: SPTSSB
Name: serine palmitoyltransferase small subunit B
RGD ID: 11983576
Description: ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); endoplasmic reticulum organization (ortholog); regulation of serine C-palmitoyltransferase activity (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103783663
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22159,273,886 - 159,300,767 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13159,278,618 - 159,306,627 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03158,358,718 - 158,385,625 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13166,405,193 - 166,432,113 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3166,406,488 - 166,406,718 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SPTSSB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22159,273,886 - 159,300,767 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13159,278,618 - 159,306,627 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03158,358,718 - 158,385,625 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13166,405,193 - 166,432,113 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3166,406,488 - 166,406,718 (-)Ensemblpanpan1.1panPan2
SPTSSB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383161,344,798 - 161,371,517 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3161,344,798 - 161,372,880 (-)EnsemblGRCh38hg38GRCh38
GRCh373161,062,586 - 161,089,305 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363162,545,274 - 162,572,565 (-)NCBINCBI36Build 36hg18NCBI36
Celera3159,484,918 - 159,512,206 (-)NCBICelera
Cytogenetic Map3q26.1NCBI
HuRef3158,461,562 - 158,488,796 (-)NCBIHuRef
CHM1_13161,025,525 - 161,052,774 (-)NCBICHM1_1
T2T-CHM13v2.03164,119,563 - 164,146,294 (-)NCBIT2T-CHM13v2.0
Sptssb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39369,726,871 - 69,768,697 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl369,726,875 - 69,767,273 (-)EnsemblGRCm39 Ensembl
GRCm38369,819,538 - 69,861,363 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl369,819,542 - 69,859,940 (-)EnsemblGRCm38mm10GRCm38
MGSCv37369,623,460 - 69,663,818 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36369,907,467 - 69,947,803 (-)NCBIMGSCv36mm8
Celera369,927,513 - 69,961,175 (-)NCBICelera
Cytogenetic Map3E2NCBI
cM Map332.3NCBI
Sptssb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82156,432,509 - 156,461,936 (-)NCBIGRCr8
mRatBN7.22154,133,728 - 154,162,127 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2154,133,733 - 154,163,120 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2161,278,461 - 161,306,893 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02159,328,962 - 159,357,400 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02153,961,762 - 153,990,194 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02166,654,036 - 166,682,325 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2166,654,043 - 166,682,325 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02186,020,417 - 186,049,284 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42159,961,911 - 159,962,141 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2148,466,971 - 148,495,254 (-)NCBICelera
Cytogenetic Map2q32NCBI
Sptssb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544811,756,766 - 11,790,368 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544811,756,766 - 11,791,418 (-)NCBIChiLan1.0ChiLan1.0
SPTSSB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13427,321,108 - 27,350,436 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3427,322,405 - 27,322,635 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3431,362,455 - 31,391,555 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03427,378,927 - 27,408,084 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13427,307,650 - 27,336,776 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03427,270,394 - 27,300,935 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03427,540,651 - 27,569,750 (-)NCBIUU_Cfam_GSD_1.0
Sptssb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560293,232,255 - 93,264,730 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367081,271,190 - 1,271,420 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367081,270,720 - 1,301,493 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPTSSB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13101,023,812 - 101,059,885 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113101,023,238 - 101,059,917 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213109,530,942 - 109,566,575 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPTSSB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11529,468,155 - 29,502,387 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660411,970,118 - 2,010,779 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sptssb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473039,291,652 - 39,323,139 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473039,280,846 - 39,324,174 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000009229   ⟹   ENSPPAP00000001855
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3166,406,488 - 166,406,718 (-)Ensembl
RefSeq Acc Id: XM_008956052   ⟹   XP_008954300
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22159,273,886 - 159,300,767 (-)NCBI
NHGRI_mPanPan13159,278,618 - 159,305,498 (-)NCBI
Mhudiblu_PPA_v03158,358,718 - 158,385,625 (-)NCBI
PanPan1.13166,405,193 - 166,432,113 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014344420   ⟹   XP_014199906
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22159,273,886 - 159,279,328 (-)NCBI
NHGRI_mPanPan13159,278,618 - 159,284,057 (-)NCBI
Mhudiblu_PPA_v03158,358,718 - 158,364,157 (-)NCBI
PanPan1.13166,405,193 - 166,410,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034957682   ⟹   XP_034813573
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22159,273,886 - 159,300,767 (-)NCBI
NHGRI_mPanPan13159,278,618 - 159,305,498 (-)NCBI
Mhudiblu_PPA_v03158,358,718 - 158,385,580 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008954300 (Get FASTA)   NCBI Sequence Viewer  
  XP_014199906 (Get FASTA)   NCBI Sequence Viewer  
  XP_034813573 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001855.1
RefSeq Acc Id: XP_008954300   ⟸   XM_008956052
- UniProtKB: A0A2R8ZA07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_014199906   ⟸   XM_014344420
- UniProtKB: A0A2R8ZA07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034813573   ⟸   XM_034957682
- UniProtKB: A0A2R8ZA07 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000001855   ⟸   ENSPPAT00000009229


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000008566 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000009229.1 UniProtKB/TrEMBL
InterPro Ser_palmitoyltrfase_ssu-like UniProtKB/TrEMBL
KEGG Report pps:103783663 UniProtKB/TrEMBL
NCBI Gene LOC103783663 ENTREZGENE
PANTHER SERINE PALMITOYLTRANSFERASE SMALL SUBUNIT B UniProtKB/TrEMBL
  SERINE PALMITOYLTRANSFERASE SMALL SUBUNIT B UniProtKB/TrEMBL
Pfam SPT_ssu-like UniProtKB/TrEMBL
UniProt A0A2R8ZA07 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-25 SPTSSB  serine palmitoyltransferase small subunit B  LOC103783663  serine palmitoyltransferase small subunit B  Symbol and/or name change 5135510 APPROVED