CHAT (choline O-acetyltransferase) - Rat Genome Database

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Gene: CHAT (choline O-acetyltransferase) Pan paniscus
Analyze
Symbol: CHAT
Name: choline O-acetyltransferase
RGD ID: 11980654
Description: ENCODES a protein that exhibits choline binding (ortholog); choline O-acetyltransferase activity (ortholog); INVOLVED IN acetylcholine biosynthetic process (ortholog); adult walking behavior (ortholog); antral ovarian follicle growth (ortholog); PARTICIPATES IN acetylcholine metabolic pathway; acetylcholine signaling pathway via muscarinic acetylcholine receptor; acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH alcohol dependence (ortholog); Alzheimer's disease (ortholog); angle-closure glaucoma (ortholog); FOUND IN axon (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2861,882,509 - 61,936,005 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11061,887,829 - 61,941,325 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01044,574,925 - 44,629,618 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CHAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2861,882,509 - 61,936,005 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11061,887,829 - 61,941,325 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01044,574,925 - 44,629,618 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CHAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381049,609,095 - 49,667,942 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1049,609,095 - 49,667,942 (+)EnsemblGRCh38hg38GRCh38
GRCh371050,817,141 - 50,875,988 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361050,487,147 - 50,543,156 (+)NCBINCBI36Build 36hg18NCBI36
Celera1044,403,227 - 44,459,207 (+)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1045,081,909 - 45,138,016 (+)NCBIHuRef
CHM1_11051,099,225 - 51,155,226 (+)NCBICHM1_1
T2T-CHM13v2.01050,457,901 - 50,516,753 (+)NCBIT2T-CHM13v2.0
Chat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,130,160 - 32,187,866 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1432,130,160 - 32,187,946 (-)EnsemblGRCm39 Ensembl
GRCm381432,408,203 - 32,465,909 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,408,203 - 32,465,989 (-)EnsemblGRCm38mm10GRCm38
MGSCv371433,221,389 - 33,279,095 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361431,237,212 - 31,294,918 (-)NCBIMGSCv36mm8
Celera1428,665,793 - 28,723,609 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
Chat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8167,663,665 - 7,723,416 (-)NCBIGRCr8
mRatBN7.2167,657,362 - 7,717,093 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl167,657,362 - 7,717,093 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx167,669,484 - 7,729,053 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0168,814,418 - 8,873,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0167,668,166 - 7,727,881 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0168,576,858 - 8,686,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl168,577,840 - 8,686,131 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01610,603,449 - 10,652,313 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0168,493,024 - 8,526,303 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,913,026 - 7,965,985 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1167,913,023 - 7,968,456 (-)NCBI
Celera167,483,676 - 7,543,221 (+)NCBICelera
Cytogenetic Map16p16NCBI
Chat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955556650,279 - 693,276 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955556650,290 - 695,135 (-)NCBIChiLan1.0ChiLan1.0
CHAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,480,364 - 1,528,858 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,482,202 - 1,528,776 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,713,916 - 1,766,663 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,656,110 - 1,708,901 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl281,657,532 - 1,708,818 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1281,453,354 - 1,506,122 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0281,490,456 - 1,543,271 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,622,347 - 1,675,117 (+)NCBIUU_Cfam_GSD_1.0
Chat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721379,450,747 - 79,499,661 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936728654,638 - 700,213 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936728653,654 - 702,433 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1490,117,464 - 90,167,611 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11490,117,464 - 90,167,611 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21498,025,088 - 98,075,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap14q25-q27NCBI
CHAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1942,159,367 - 42,216,137 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl942,162,601 - 42,214,705 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660481,904,633 - 1,957,288 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chat
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624928360,704 - 399,714 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624928357,812 - 401,668 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_003809022   ⟹   XP_003809070
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2861,882,509 - 61,936,005 (+)NCBI
NHGRI_mPanPan11061,887,829 - 61,941,325 (+)NCBI
Mhudiblu_PPA_v01044,574,925 - 44,628,689 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003809070 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024832.1
  ENSPPAP00000024834.1
RefSeq Acc Id: XP_003809070   ⟸   XM_003809022
- UniProtKB: A0A2R9B5G4 (UniProtKB/TrEMBL)
- Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035551 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047658.1 UniProtKB/TrEMBL
  ENSPPAT00000047660.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.559.10 UniProtKB/TrEMBL
  3.30.559.70 UniProtKB/TrEMBL
InterPro Carn_acyl_trans UniProtKB/TrEMBL
  CAT-like_dom_sf UniProtKB/TrEMBL
  Cho/carn_acyl_trans UniProtKB/TrEMBL
  Cho/carn_acyl_trans_2 UniProtKB/TrEMBL
NCBI Gene CHAT ENTREZGENE
PANTHER CHOLINE O-ACETYLTRANSFERASE UniProtKB/TrEMBL
  PTHR22589 UniProtKB/TrEMBL
Pfam Carn_acyltransf UniProtKB/TrEMBL
PROSITE ACYLTRANSF_C_1 UniProtKB/TrEMBL
  ACYLTRANSF_C_2 UniProtKB/TrEMBL
Superfamily-SCOP CoA-dependent acyltransferases UniProtKB/TrEMBL
UniProt A0A2R9B5G4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BCI5_PANPA UniProtKB/TrEMBL