CHAT (choline O-acetyltransferase) - Rat Genome Database

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Gene: CHAT (choline O-acetyltransferase) Pan paniscus
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Symbol: CHAT
Name: choline O-acetyltransferase
RGD ID: 11980654
Description: ENCODES a protein that exhibits choline binding (ortholog); choline O-acetyltransferase activity (ortholog); INVOLVED IN acetylcholine biosynthetic process (ortholog); adult walking behavior (ortholog); antral ovarian follicle growth (ortholog); PARTICIPATES IN acetylcholine metabolic pathway; acetylcholine signaling pathway via muscarinic acetylcholine receptor; acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH Alzheimer's disease (ortholog); angle-closure glaucoma (ortholog); asthma (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); neuron projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v01044,574,925 - 44,629,618 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CHAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v01044,574,925 - 44,629,618 (-)NCBIMhudiblu_PPA_v0panPan3
CHAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1049,609,095 - 49,667,942 (+)EnsemblGRCh38hg38GRCh38
GRCh381049,609,095 - 49,667,942 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371050,817,141 - 50,875,988 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361050,487,147 - 50,543,156 (+)NCBINCBI36hg18NCBI36
Celera1044,403,227 - 44,459,207 (+)NCBI
Cytogenetic Map10q11.23NCBI
HuRef1045,081,909 - 45,138,016 (+)NCBIHuRef
CHM1_11051,099,225 - 51,155,226 (+)NCBICHM1_1
Chat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,130,160 - 32,187,866 (-)NCBIGRCm39mm39
GRCm39 Ensembl1432,130,160 - 32,187,946 (-)Ensembl
GRCm381432,408,203 - 32,465,909 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,408,203 - 32,465,989 (-)EnsemblGRCm38mm10GRCm38
MGSCv371433,221,389 - 33,279,095 (-)NCBIGRCm37mm9NCBIm37
MGSCv361431,237,212 - 31,294,918 (-)NCBImm8
Celera1428,665,793 - 28,723,609 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
Chat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2167,657,362 - 7,717,093 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl167,657,362 - 7,717,093 (-)Ensembl
Rnor_6.0168,576,858 - 8,686,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl168,577,840 - 8,686,131 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01610,603,449 - 10,652,313 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0168,493,024 - 8,526,303 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,913,026 - 7,965,985 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1167,913,023 - 7,968,456 (-)NCBI
Celera167,483,676 - 7,543,221 (+)NCBICelera
Cytogenetic Map16p16NCBI
Chat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955556650,279 - 693,276 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955556650,290 - 695,135 (-)NCBIChiLan1.0ChiLan1.0
CHAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,480,364 - 1,528,858 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,482,202 - 1,528,776 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,713,916 - 1,766,663 (+)NCBI
ROS_Cfam_1.0281,656,110 - 1,708,901 (+)NCBI
UMICH_Zoey_3.1281,453,354 - 1,506,122 (+)NCBI
UNSW_CanFamBas_1.0281,490,456 - 1,543,271 (+)NCBI
UU_Cfam_GSD_1.0281,622,347 - 1,675,117 (+)NCBI
Chat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721379,450,747 - 79,499,661 (-)NCBI
SpeTri2.0NW_004936728653,654 - 702,433 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1490,117,464 - 90,167,611 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11490,117,464 - 90,167,611 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21498,025,088 - 98,075,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap14q25-q27NCBI
CHAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1942,159,367 - 42,216,137 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl942,162,601 - 42,214,705 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660481,904,633 - 1,957,288 (-)NCBIVero_WHO_p1.0
Chat
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624928357,812 - 401,668 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003809022   ⟹   XP_003809070
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01044,574,925 - 44,628,689 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003809024   ⟹   XP_003809072
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01044,574,925 - 44,629,618 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003809026   ⟹   XP_003809074
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01044,574,925 - 44,629,601 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014343697   ⟹   XP_014199183
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01044,574,925 - 44,626,965 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003809070 (Get FASTA)   NCBI Sequence Viewer  
  XP_003809072 (Get FASTA)   NCBI Sequence Viewer  
  XP_003809074 (Get FASTA)   NCBI Sequence Viewer  
  XP_014199183 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003809072   ⟸   XM_003809024
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003809074   ⟸   XM_003809026
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003809070   ⟸   XM_003809022
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_014199183   ⟸   XM_014343697
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035551 ENTREZGENE
NCBI Gene CHAT ENTREZGENE