CCNK (cyclin K) - Rat Genome Database

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Gene: CCNK (cyclin K) Pan paniscus
Analyze
Symbol: CCNK
Name: cyclin K
RGD ID: 11935305
Description: ENCODES a protein that exhibits cyclin-dependent protein serine/threonine kinase activity (inferred); cyclin-dependent protein serine/threonine kinase regulator activity (inferred); protein kinase binding (inferred); INVOLVED IN DNA damage response (ortholog); in utero embryonic development (ortholog); negative regulation of stem cell differentiation (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH INTELLECTUAL DEVELOPMENTAL DISORDER WITH HYPERTELORISM AND DISTINCTIVE FACIES (ortholog); FOUND IN cyclin K-CDK12 complex (inferred); cyclin K-CDK13 complex (inferred); cyclin-dependent protein kinase holoenzyme complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-K
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215100,635,564 - 100,666,123 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11499,852,060 - 99,882,619 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01480,105,372 - 80,136,511 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11499,427,200 - 99,457,678 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1499,438,814 - 99,480,842 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CCNK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215100,635,564 - 100,666,123 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11499,852,060 - 99,882,619 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01480,105,372 - 80,136,511 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11499,427,200 - 99,457,678 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1499,438,814 - 99,480,842 (+)Ensemblpanpan1.1panPan2
CCNK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381499,481,409 - 99,512,440 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1499,481,169 - 99,535,044 (+)EnsemblGRCh38hg38GRCh38
GRCh371499,947,746 - 99,978,777 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,017,492 - 99,047,605 (+)NCBINCBI36Build 36hg18NCBI36
Build 341499,017,491 - 99,047,604NCBI
Celera1480,002,624 - 80,032,734 (+)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1480,131,153 - 80,161,252 (+)NCBIHuRef
CHM1_11499,885,503 - 99,915,610 (+)NCBICHM1_1
T2T-CHM13v2.01493,712,952 - 93,744,005 (+)NCBIT2T-CHM13v2.0
Ccnk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,145,543 - 108,170,252 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12108,145,838 - 108,169,618 (+)EnsemblGRCm39 Ensembl
GRCm3812108,179,308 - 108,203,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,179,579 - 108,203,359 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712109,417,948 - 109,441,569 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612108,627,650 - 108,651,164 (+)NCBIMGSCv36mm8
Celera12109,416,780 - 109,443,587 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1259.23NCBI
Ccnk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86132,854,428 - 132,877,604 (+)NCBIGRCr8
mRatBN7.26127,090,115 - 127,113,195 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,090,569 - 127,113,191 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6127,214,939 - 127,237,557 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06127,509,983 - 127,532,601 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06126,868,198 - 126,890,820 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06132,090,235 - 132,113,560 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,090,218 - 132,113,557 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06141,260,560 - 141,283,940 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46132,547,058 - 132,569,679 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6124,649,851 - 124,672,436 (+)NCBICelera
Cytogenetic Map6q32NCBI
Ccnk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543820,835,825 - 20,849,999 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543820,826,818 - 20,850,496 (+)NCBIChiLan1.0ChiLan1.0
CCNK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1867,910,772 - 67,927,216 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl867,901,426 - 67,945,214 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha867,424,492 - 67,450,284 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0868,188,098 - 68,213,958 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl868,188,164 - 68,231,870 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1867,849,135 - 67,874,925 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0867,915,647 - 67,941,422 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0868,312,735 - 68,338,539 (+)NCBIUU_Cfam_GSD_1.0
Ccnk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086406,765,952 - 6,798,802 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366043,283,715 - 3,319,572 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366043,283,996 - 3,316,516 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7120,487,206 - 120,514,014 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17120,487,140 - 120,514,223 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27128,108,566 - 128,124,064 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12477,436,569 - 77,466,703 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2477,436,479 - 77,467,322 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605364,572,606 - 64,605,678 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccnk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247344,367,396 - 4,383,419 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247344,366,884 - 4,392,934 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000043319   ⟹   ENSPPAP00000020525
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1499,438,814 - 99,480,842 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043323   ⟹   ENSPPAP00000020529
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1499,438,814 - 99,456,946 (+)Ensembl
RefSeq Acc Id: XM_034938113   ⟹   XP_034794004
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v215100,635,580 - 100,666,123 (+)NCBI
NHGRI_mPanPan11499,852,076 - 99,882,619 (+)NCBI
Mhudiblu_PPA_v01480,105,511 - 80,135,598 (+)NCBI
RefSeq Acc Id: XM_034938114   ⟹   XP_034794005
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v215100,635,896 - 100,666,123 (+)NCBI
NHGRI_mPanPan11499,852,392 - 99,882,619 (+)NCBI
Mhudiblu_PPA_v01480,105,427 - 80,135,598 (+)NCBI
RefSeq Acc Id: XM_055098000   ⟹   XP_054953975
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v215100,635,564 - 100,666,123 (+)NCBI
NHGRI_mPanPan11499,852,060 - 99,882,619 (+)NCBI
RefSeq Acc Id: XM_055098001   ⟹   XP_054953976
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v215100,635,896 - 100,666,123 (+)NCBI
NHGRI_mPanPan11499,863,251 - 99,882,619 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034794004 (Get FASTA)   NCBI Sequence Viewer  
  XP_034794005 (Get FASTA)   NCBI Sequence Viewer  
  XP_054953975 (Get FASTA)   NCBI Sequence Viewer  
  XP_054953976 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000020525.1
  ENSPPAP00000020529.1
RefSeq Acc Id: XP_034794005   ⟸   XM_034938114
- UniProtKB: A0A2R9AZK5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034794004   ⟸   XM_034938113
- UniProtKB: A0A2R9AZK5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000020525   ⟸   ENSPPAT00000043319
Ensembl Acc Id: ENSPPAP00000020529   ⟸   ENSPPAT00000043323
RefSeq Acc Id: XP_054953975   ⟸   XM_055098000
- UniProtKB: A0A2R9AZK5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054953976   ⟸   XM_055098001
- UniProtKB: A0A2R9AZK5 (UniProtKB/TrEMBL)
Protein Domains
Cyclin C-terminal   Cyclin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033479 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043319.1 UniProtKB/TrEMBL
  ENSPPAT00000043323.1 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin/Ssn8 UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
NCBI Gene CCNK ENTREZGENE
PANTHER PTHR10026 UniProtKB/TrEMBL
Pfam Cyclin_N UniProtKB/TrEMBL
  CycT2-like_C UniProtKB/TrEMBL
PIRSF Cyclin_L UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A2R9AXH1_PANPA UniProtKB/TrEMBL
  A0A2R9AZK5 ENTREZGENE, UniProtKB/TrEMBL