FKTN (fukutin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: FKTN (fukutin) Pan paniscus
Analyze
Symbol: FKTN
Name: fukutin
RGD ID: 11910191
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); phosphotransferase activity, for other substituted phosphate groups (inferred); INVOLVED IN basement membrane organization (ortholog); brain development (ortholog); cerebellar cortex development (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2L (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2M (ortholog); cardiomyopathy (ortholog); FOUND IN cis-Golgi network (inferred); endoplasmic reticulum (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ribitol-5-phosphate transferase FKTN; T-cell acute lymphocytic leukemia protein 2; TAL bHLH transcription factor 2; TAL2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21133,736,875 - 33,835,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1933,739,744 - 33,839,021 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0976,723,071 - 76,821,611 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19104,849,447 - 104,926,414 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9104,849,496 - 104,925,422 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FKTN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21133,736,875 - 33,835,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1933,739,744 - 33,839,021 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0976,723,071 - 76,821,611 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19104,849,447 - 104,926,414 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9104,849,496 - 104,925,422 (+)Ensemblpanpan1.1panPan2
FKTN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389105,558,130 - 105,641,118 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9105,558,122 - 105,653,820 (+)EnsemblGRCh38hg38GRCh38
GRCh379108,320,411 - 108,403,399 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369107,360,232 - 107,443,220 (+)NCBINCBI36Build 36hg18NCBI36
Build 349105,399,978 - 105,482,953NCBI
Celera978,825,571 - 78,908,566 (+)NCBICelera
Cytogenetic Map9q31.2NCBI
HuRef977,921,830 - 78,004,880 (+)NCBIHuRef
CHM1_19108,467,406 - 108,550,392 (+)NCBICHM1_1
T2T-CHM13v2.09117,732,799 - 117,815,798 (+)NCBIT2T-CHM13v2.0
Fktn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39453,713,745 - 53,765,785 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl453,713,998 - 53,777,890 (+)EnsemblGRCm39 Ensembl
GRCm38453,714,107 - 53,765,785 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl453,713,998 - 53,777,890 (+)EnsemblGRCm38mm10GRCm38
MGSCv37453,727,054 - 53,776,143 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36453,735,282 - 53,784,371 (+)NCBIMGSCv36mm8
Celera453,671,147 - 53,720,238 (+)NCBICelera
Cytogenetic Map4B2NCBI
cM Map428.74NCBI
Fktn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8573,134,746 - 73,191,772 (+)NCBIGRCr8
mRatBN7.2568,339,803 - 68,396,412 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl568,340,028 - 68,396,409 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx570,227,762 - 70,281,805 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0572,044,733 - 72,098,826 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0572,016,575 - 72,070,620 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0570,522,001 - 70,578,270 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl570,528,688 - 70,578,273 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0574,697,518 - 74,754,106 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4571,155,051 - 71,208,525 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1571,168,040 - 71,211,945 (+)NCBI
Celera567,234,078 - 67,287,987 (+)NCBICelera
Cytogenetic Map5q24NCBI
Fktn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541920,933,662 - 20,994,793 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541920,933,662 - 20,994,793 (-)NCBIChiLan1.0ChiLan1.0
FKTN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11161,394,002 - 61,462,056 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1161,405,034 - 61,461,396 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1159,854,900 - 59,922,736 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01162,541,606 - 62,598,262 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1162,530,493 - 62,597,602 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11161,048,756 - 61,131,662 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01161,079,051 - 61,135,687 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01161,760,632 - 61,835,969 (+)NCBIUU_Cfam_GSD_1.0
Fktn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947176,585,787 - 176,685,702 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365596,581,622 - 6,581,948 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365596,619,531 - 6,670,727 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365596,612,318 - 6,680,690 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FKTN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11246,852,387 - 246,916,650 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21276,542,569 - 276,576,326 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FKTN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11233,872,165 - 33,964,105 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1233,900,362 - 33,953,377 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660358,677,300 - 8,770,035 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fktn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247585,792,514 - 5,877,709 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247585,750,804 - 5,877,797 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000005146   ⟹   ENSPPAP00000001099
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9104,947,724 - 104,948,050 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000031419   ⟹   ENSPPAP00000008780
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9104,849,496 - 104,920,594 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000031423   ⟹   ENSPPAP00000008784
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9104,866,352 - 104,925,422 (+)Ensembl
RefSeq Acc Id: XM_024930165   ⟹   XP_024785933
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21133,758,816 - 33,803,353 (-)NCBI
NHGRI_mPanPan1933,761,184 - 33,805,714 (-)NCBI
Mhudiblu_PPA_v0976,755,551 - 76,798,593 (+)NCBI
PanPan1.19104,881,869 - 104,925,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055117762   ⟹   XP_054973737
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21133,737,511 - 33,835,760 (-)NCBI
NHGRI_mPanPan1933,761,184 - 33,839,020 (-)NCBI
RefSeq Acc Id: XM_055117763   ⟹   XP_054973738
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21133,736,892 - 33,835,805 (-)NCBI
NHGRI_mPanPan1933,739,744 - 33,839,021 (-)NCBI
RefSeq Acc Id: XM_055117764   ⟹   XP_054973739
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21133,764,863 - 33,835,782 (-)NCBI
NHGRI_mPanPan1933,767,231 - 33,838,150 (-)NCBI
RefSeq Acc Id: XM_055117765   ⟹   XP_054973740
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21133,764,863 - 33,835,805 (-)NCBI
NHGRI_mPanPan1933,767,231 - 33,839,021 (-)NCBI
RefSeq Acc Id: XM_063593939   ⟹   XP_063450009
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21133,736,875 - 33,835,782 (-)NCBI
RefSeq Acc Id: XP_024785933   ⟸   XM_024930165
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZUZ3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000001099   ⟸   ENSPPAT00000005146
Ensembl Acc Id: ENSPPAP00000008784   ⟸   ENSPPAT00000031423
Ensembl Acc Id: ENSPPAP00000008780   ⟸   ENSPPAT00000031419
RefSeq Acc Id: XP_054973738   ⟸   XM_055117763
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054973737   ⟸   XM_055117762
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054973740   ⟸   XM_055117765
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054973739   ⟸   XM_055117764
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063450009   ⟸   XM_063593939
- Peptide Label: isoform X3

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000004739 Ensembl, UniProtKB/TrEMBL
  ENSPPAG00000027627 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000005146.1 UniProtKB/TrEMBL
  ENSPPAT00000031419.1 UniProtKB/TrEMBL
  ENSPPAT00000031423.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  FKTN_N UniProtKB/TrEMBL
  Fukutin-related UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  LicD_fam UniProtKB/TrEMBL
  TAL-like UniProtKB/TrEMBL
NCBI Gene FKTN ENTREZGENE
PANTHER FUKUTIN UniProtKB/TrEMBL
  PTHR13864 UniProtKB/TrEMBL
  PTHR15407 UniProtKB/TrEMBL
  T-CELL ACUTE LYMPHOCYTIC LEUKEMIA PROTEIN 2 UniProtKB/TrEMBL
Pfam FKTN_N UniProtKB/TrEMBL
  HLH UniProtKB/TrEMBL
  LicD UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt A0A2R8Z8D5_PANPA UniProtKB/TrEMBL
  A0A2R8ZUZ2_PANPA UniProtKB/TrEMBL
  A0A2R8ZUZ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 FKTN  fukutin  TAL2  TAL bHLH transcription factor 2  Data merged from RGD:11922192 737654 PROVISIONAL