Fktn (fukutin) - Rat Genome Database

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Gene: Fktn (fukutin) Chinchilla lanigera
Analyze
Symbol: Fktn
Name: fukutin
RGD ID: 8976625
Description: ENCODES a protein that exhibits phosphotransferase activity, for other substituted phosphate groups (ortholog); INVOLVED IN basement membrane organization (ortholog); brain development (ortholog); cerebellar cortex development (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2L (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2M (ortholog); cardiomyopathy (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541920,933,662 - 20,994,793 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541920,933,662 - 20,994,793 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fktn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541920,933,662 - 20,994,793 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541920,933,662 - 20,994,793 (-)NCBIChiLan1.0ChiLan1.0
FKTN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389105,558,130 - 105,641,118 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9105,558,122 - 105,653,820 (+)EnsemblGRCh38hg38GRCh38
GRCh379108,320,411 - 108,403,399 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369107,360,232 - 107,443,220 (+)NCBINCBI36Build 36hg18NCBI36
Build 349105,399,978 - 105,482,953NCBI
Celera978,825,571 - 78,908,566 (+)NCBICelera
Cytogenetic Map9q31.2NCBI
HuRef977,921,830 - 78,004,880 (+)NCBIHuRef
CHM1_19108,467,406 - 108,550,392 (+)NCBICHM1_1
T2T-CHM13v2.09117,732,799 - 117,815,798 (+)NCBIT2T-CHM13v2.0
Fktn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39453,713,745 - 53,765,785 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl453,713,998 - 53,777,890 (+)EnsemblGRCm39 Ensembl
GRCm38453,714,107 - 53,765,785 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl453,713,998 - 53,777,890 (+)EnsemblGRCm38mm10GRCm38
MGSCv37453,727,054 - 53,776,143 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36453,735,282 - 53,784,371 (+)NCBIMGSCv36mm8
Celera453,671,147 - 53,720,238 (+)NCBICelera
Cytogenetic Map4B2NCBI
cM Map428.74NCBI
Fktn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8573,134,746 - 73,191,772 (+)NCBIGRCr8
mRatBN7.2568,339,803 - 68,396,412 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl568,340,028 - 68,396,409 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx570,227,762 - 70,281,805 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0572,044,733 - 72,098,826 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0572,016,575 - 72,070,620 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0570,522,001 - 70,578,270 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl570,528,688 - 70,578,273 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0574,697,518 - 74,754,106 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4571,155,051 - 71,208,525 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1571,168,040 - 71,211,945 (+)NCBI
Celera567,234,078 - 67,287,987 (+)NCBICelera
Cytogenetic Map5q24NCBI
FKTN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21133,736,875 - 33,835,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1933,739,744 - 33,839,021 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0976,723,071 - 76,821,611 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19104,849,447 - 104,926,414 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9104,849,496 - 104,925,422 (+)Ensemblpanpan1.1panPan2
FKTN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11161,394,002 - 61,462,056 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1161,405,034 - 61,461,396 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1159,854,900 - 59,922,736 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01162,541,606 - 62,598,262 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1162,530,493 - 62,597,602 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11161,048,756 - 61,131,662 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01161,079,051 - 61,135,687 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01161,760,632 - 61,835,969 (+)NCBIUU_Cfam_GSD_1.0
Fktn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947176,585,787 - 176,685,702 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365596,581,622 - 6,581,948 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365596,619,531 - 6,670,727 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365596,612,318 - 6,680,690 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FKTN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11246,852,387 - 246,916,650 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21276,542,569 - 276,576,326 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FKTN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11233,872,165 - 33,964,105 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1233,900,362 - 33,953,377 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660358,677,300 - 8,770,035 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fktn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247585,792,514 - 5,877,709 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247585,750,804 - 5,877,797 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000014699   ⟹   ENSCLAP00000014541
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541920,933,662 - 20,994,793 (-)Ensembl
RefSeq Acc Id: XM_005382776   ⟹   XP_005382833
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541920,933,662 - 20,994,792 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013513225   ⟹   XP_013368679
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541920,933,662 - 20,994,793 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382833 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368679 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014541
  ENSCLAP00000014541.1
RefSeq Acc Id: XP_005382833   ⟸   XM_005382776
- UniProtKB: A0A8C2VKB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368679   ⟸   XM_013513225
- UniProtKB: A0A8C2VKB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000014541   ⟸   ENSCLAT00000014699

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010039 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014699 ENTREZGENE
  ENSCLAT00000014699.1 UniProtKB/TrEMBL
InterPro FKTN_N UniProtKB/TrEMBL
  Fukutin-related UniProtKB/TrEMBL
  LicD_fam UniProtKB/TrEMBL
NCBI Gene Fktn ENTREZGENE
PANTHER FUKUTIN UniProtKB/TrEMBL
  PTHR15407 UniProtKB/TrEMBL
Pfam FKTN_N UniProtKB/TrEMBL
  LicD UniProtKB/TrEMBL
UniProt A0A8C2VKB7 ENTREZGENE, UniProtKB/TrEMBL