ESRRB (estrogen related receptor beta) - Rat Genome Database

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Gene: ESRRB (estrogen related receptor beta) Pan paniscus
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Symbol: ESRRB
Name: estrogen related receptor beta
RGD ID: 11878262
Description: ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cell dedifferentiation (ortholog); cell population proliferation (ortholog); embryonic placenta development (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 35 (ortholog); dilated cardiomyopathy (ortholog); FOUND IN condensed chromosome (ortholog); integrator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: estrogen-related receptor beta; LOC100974700; LOC100979994; steroid hormone receptor ERR2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21577,399,202 - 77,591,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11476,615,708 - 76,807,686 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01456,868,361 - 57,060,552 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11475,659,836 - 76,264,827 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1475,839,333 - 76,266,895 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ESRRB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21577,399,202 - 77,591,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11476,615,708 - 76,807,686 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01456,868,361 - 57,060,552 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11475,659,836 - 76,264,827 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1475,839,333 - 76,266,895 (+)Ensemblpanpan1.1panPan2
ESRRB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381476,310,777 - 76,501,837 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1476,310,712 - 76,501,837 (+)EnsemblGRCh38hg38GRCh38
GRCh371476,777,120 - 76,968,180 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361475,907,479 - 76,036,961 (+)NCBINCBI36Build 36hg18NCBI36
Build 341475,907,478 - 76,036,961NCBI
Celera1456,875,493 - 57,005,971 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,006,242 - 57,136,798 (+)NCBIHuRef
CHM1_11476,775,473 - 76,905,976 (+)NCBICHM1_1
T2T-CHM13v2.01470,444,839 - 70,711,195 (+)NCBIT2T-CHM13v2.0
Esrrb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,407,891 - 86,568,402 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1286,407,891 - 86,568,402 (+)EnsemblGRCm39 Ensembl
GRCm381286,361,117 - 86,521,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,361,117 - 86,521,628 (+)EnsemblGRCm38mm10GRCm38
MGSCv371287,702,067 - 87,862,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361287,250,220 - 87,410,725 (+)NCBIMGSCv36mm8
Celera1287,822,322 - 87,982,916 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1240.49NCBI
Esrrb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86111,738,662 - 111,894,087 (+)NCBIGRCr8
mRatBN7.26106,007,701 - 106,163,136 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,008,095 - 106,160,791 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6106,282,013 - 106,328,257 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06106,580,916 - 106,627,164 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06105,950,549 - 105,996,797 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06110,360,940 - 110,458,406 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,410,141 - 110,455,906 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06119,600,549 - 119,756,691 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46110,589,116 - 110,635,158 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X146,790,537 - 146,792,860 (+)NCBI
Celera6103,940,309 - 103,986,414 (+)NCBICelera
Cytogenetic Map6q31NCBI
Esrrb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955438365,137 - 534,666 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955438365,375 - 534,086 (+)NCBIChiLan1.0ChiLan1.0
ESRRB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1849,253,877 - 49,424,148 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl849,253,332 - 49,421,332 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha848,993,759 - 49,108,098 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0849,536,327 - 49,651,095 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl849,478,199 - 49,651,088 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1849,207,343 - 49,321,606 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0849,229,899 - 49,344,297 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0849,627,923 - 49,742,343 (+)NCBIUU_Cfam_GSD_1.0
Esrrb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864026,614,392 - 26,718,863 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364885,292,466 - 5,454,689 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364885,350,133 - 5,452,366 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ESRRB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl799,514,168 - 99,699,011 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1799,511,135 - 99,699,478 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27105,560,818 - 105,743,671 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ESRRB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12453,630,998 - 53,762,098 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605341,843,619 - 41,970,318 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Esrrb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473425,261,493 - 25,430,045 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473425,261,493 - 25,369,092 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000047530   ⟹   ENSPPAP00000024705
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1475,839,333 - 76,266,895 (+)Ensembl
RefSeq Acc Id: XM_034937890   ⟹   XP_034793781
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21577,399,202 - 77,591,180 (+)NCBI
NHGRI_mPanPan11476,615,708 - 76,807,686 (+)NCBI
Mhudiblu_PPA_v01456,868,361 - 57,060,552 (+)NCBI
RefSeq Acc Id: XM_055097309   ⟹   XP_054953284
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21577,465,348 - 77,591,180 (+)NCBI
NHGRI_mPanPan11476,681,854 - 76,807,686 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034793781 (Get FASTA)   NCBI Sequence Viewer  
  XP_054953284 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024705.1
RefSeq Acc Id: XP_034793781   ⟸   XM_034937890
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B8V6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000024705   ⟸   ENSPPAT00000047530
RefSeq Acc Id: XP_054953284   ⟸   XM_055097309
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B8V6 (UniProtKB/TrEMBL)
Protein Domains
NR LBD   Nuclear receptor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035482 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047530.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro Est_rcpt/est-rel_rcp UniProtKB/TrEMBL
  NHR-like_dom_sf UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hormone_rcpt_NR3 UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  Oest-rel_rcp UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
NCBI Gene LOC100979994 ENTREZGENE
PANTHER KNIRPS-RELATED PROTEIN-RELATED UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PIRSF ER-like_NR UniProtKB/TrEMBL
  ERR1-2-3 UniProtKB/TrEMBL
PRINTS STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF48508 UniProtKB/TrEMBL
UniProt A0A2R9B8V6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 ESRRB  estrogen related receptor beta  LOC100974700  steroid hormone receptor ERR2  Data merged from RGD:11902041 737654 PROVISIONAL
2018-05-08 ESRRB  estrogen related receptor beta  LOC100979994  steroid hormone receptor ERR2  Symbol and/or name change 5135510 APPROVED