RPL38 (ribosomal protein L38) - Rat Genome Database

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Gene: RPL38 (ribosomal protein L38) Pan paniscus
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Symbol: RPL38
Name: ribosomal protein L38
RGD ID: 11869138
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN 90S preribosome assembly (ortholog); axial mesoderm development (ortholog); middle ear morphogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH otitis media (ortholog); FOUND IN cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L38; large ribosomal subunit protein eL38
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,234,364 - 90,240,640 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,056,818 - 95,063,078 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,142,367 - 68,148,637 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11773,700,597 - 73,706,492 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1773,700,597 - 73,706,492 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
otitis media  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,234,364 - 90,240,640 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,056,818 - 95,063,078 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,142,367 - 68,148,637 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11773,700,597 - 73,706,492 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1773,700,597 - 73,706,492 (+)Ensemblpanpan1.1panPan2
RPL38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,203,678 - 74,210,655 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,203,582 - 74,210,655 (+)EnsemblGRCh38hg38GRCh38
GRCh371772,199,817 - 72,206,794 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361769,711,390 - 69,717,614 (+)NCBINCBI36Build 36hg18NCBI36
Build 341769,711,411 - 69,717,612NCBI
Celera1768,786,341 - 68,792,564 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1767,610,253 - 67,616,478 (+)NCBIHuRef
CHM1_11772,264,424 - 72,270,648 (+)NCBICHM1_1
T2T-CHM13v2.01775,094,516 - 75,101,493 (+)NCBIT2T-CHM13v2.0
Rpl38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,558,644 - 114,563,159 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,559,350 - 114,563,157 (+)EnsemblGRCm39 Ensembl
GRCm3811114,667,818 - 114,672,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,668,524 - 114,672,331 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711114,529,857 - 114,533,645 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,484,614 - 114,488,421 (+)NCBIMGSCv36mm8
Celera11126,419,661 - 126,431,615 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1179.82NCBI
Rpl38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,200,414 - 100,204,070 (+)NCBIGRCr8
mRatBN7.21099,701,330 - 99,705,004 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1610,182,742 - 10,182,954 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2184,905,204 - 184,905,416 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl3155,980,625 - 155,981,036 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1494,400,027 - 94,400,239 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1099,701,362 - 99,705,004 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10104,759,311 - 104,762,925 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,222,430 - 104,226,044 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01099,622,436 - 99,626,071 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,198,424 - 103,202,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2199,479,007 - 199,479,309 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010102,858,164 - 102,861,799 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410104,545,644 - 104,549,279 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1098,292,414 - 98,296,049 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Rpl38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,129,633 - 1,133,896 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,129,607 - 1,133,896 (+)NCBIChiLan1.0ChiLan1.0
RPL38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,161,862 - 6,169,705 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,783,504 - 6,789,795 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,834,187 - 6,840,190 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,834,198 - 6,840,663 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,874,786 - 6,880,977 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,978,191 - 6,984,645 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.097,038,192 - 7,044,695 (-)NCBIUU_Cfam_GSD_1.0
Rpl38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,744,442 - 6,748,618 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655242,123 - 246,415 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936655242,259 - 246,416 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,884,902 - 6,898,764 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,884,899 - 6,889,966 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,911,975 - 6,917,043 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11647,425,014 - 47,432,401 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607718,239,515 - 18,245,756 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,180,197 - 4,198,482 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,180,507 - 4,196,514 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000041271   ⟹   ENSPPAP00000018539
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1773,700,597 - 73,706,492 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000041281   ⟹   ENSPPAP00000018548
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1773,700,804 - 73,706,446 (+)Ensembl
RefSeq Acc Id: XM_008965922   ⟹   XP_008964170
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,234,364 - 90,240,640 (+)NCBI
NHGRI_mPanPan11795,056,818 - 95,063,078 (+)NCBI
Mhudiblu_PPA_v01768,142,367 - 68,148,637 (+)NCBI
PanPan1.11773,700,597 - 73,706,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008965923   ⟹   XP_008964171
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,234,491 - 90,240,640 (+)NCBI
NHGRI_mPanPan11795,056,933 - 95,063,078 (+)NCBI
Mhudiblu_PPA_v01768,142,487 - 68,148,637 (+)NCBI
PanPan1.11773,700,678 - 73,706,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008965924   ⟹   XP_008964172
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,234,455 - 90,240,640 (+)NCBI
NHGRI_mPanPan11795,056,905 - 95,063,078 (+)NCBI
Mhudiblu_PPA_v01768,142,469 - 68,148,637 (+)NCBI
PanPan1.11773,700,692 - 73,706,492 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008964170 (Get FASTA)   NCBI Sequence Viewer  
  XP_008964171 (Get FASTA)   NCBI Sequence Viewer  
  XP_008964172 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018539.1
  ENSPPAP00000018548.1
RefSeq Acc Id: XP_008964170   ⟸   XM_008965922
- UniProtKB: A0A2R9AUE2 (UniProtKB/TrEMBL),   A0A2R9AN23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008964171   ⟸   XM_008965923
- UniProtKB: A0A2R9AUE2 (UniProtKB/TrEMBL),   A0A2R9AN23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008964172   ⟸   XM_008965924
- UniProtKB: A0A2R9AUE2 (UniProtKB/TrEMBL),   A0A2R9AN23 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000018539   ⟸   ENSPPAT00000041271
Ensembl Acc Id: ENSPPAP00000018548   ⟸   ENSPPAT00000041281


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032390 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041271.1 UniProtKB/TrEMBL
  ENSPPAT00000041281.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.720.90 UniProtKB/TrEMBL
InterPro Ribosomal_L38e UniProtKB/TrEMBL
  Ribosomal_L38e_sf UniProtKB/TrEMBL
KEGG Report pps:100990805 UniProtKB/TrEMBL
NCBI Gene RPL38 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L38 UniProtKB/TrEMBL
  PTHR10965 UniProtKB/TrEMBL
Pfam Ribosomal_L38e UniProtKB/TrEMBL
UniProt A0A2R9AN23 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AUE2 ENTREZGENE, UniProtKB/TrEMBL