Rpl38 (ribosomal protein L38) - Rat Genome Database

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Gene: Rpl38 (ribosomal protein L38) Ictidomys tridecemlineatus
Analyze
Symbol: Rpl38
Name: ribosomal protein L38
RGD ID: 12692355
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN 90S preribosome assembly (ortholog); axial mesoderm development (ortholog); middle ear morphogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH otitis media (ortholog); FOUND IN cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L38; ribosomal protein L38, transcript variant X1; ribosomal protein L38, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,744,442 - 6,748,618 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655242,123 - 246,415 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936655242,259 - 246,416 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
otitis media  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rpl38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,744,442 - 6,748,618 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655242,123 - 246,415 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936655242,259 - 246,416 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,203,678 - 74,210,655 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,203,582 - 74,210,655 (+)EnsemblGRCh38hg38GRCh38
GRCh371772,199,817 - 72,206,794 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361769,711,390 - 69,717,614 (+)NCBINCBI36Build 36hg18NCBI36
Build 341769,711,411 - 69,717,612NCBI
Celera1768,786,341 - 68,792,564 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1767,610,253 - 67,616,478 (+)NCBIHuRef
CHM1_11772,264,424 - 72,270,648 (+)NCBICHM1_1
T2T-CHM13v2.01775,094,516 - 75,101,493 (+)NCBIT2T-CHM13v2.0
Rpl38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,558,644 - 114,563,159 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,559,350 - 114,563,157 (+)EnsemblGRCm39 Ensembl
GRCm3811114,667,818 - 114,672,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,668,524 - 114,672,331 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711114,529,857 - 114,533,645 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,484,614 - 114,488,421 (+)NCBIMGSCv36mm8
Celera11126,419,661 - 126,431,615 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1179.82NCBI
Rpl38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,200,414 - 100,204,070 (+)NCBIGRCr8
mRatBN7.21099,701,330 - 99,705,004 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1610,182,742 - 10,182,954 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2184,905,204 - 184,905,416 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl3155,980,625 - 155,981,036 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1099,701,362 - 99,705,004 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1494,400,027 - 94,400,239 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10104,759,311 - 104,762,925 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,222,430 - 104,226,044 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01099,622,436 - 99,626,071 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,198,424 - 103,202,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2199,479,007 - 199,479,309 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010102,858,164 - 102,861,799 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410104,545,644 - 104,549,279 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1098,292,414 - 98,296,049 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Rpl38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,129,633 - 1,133,896 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,129,607 - 1,133,896 (+)NCBIChiLan1.0ChiLan1.0
RPL38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,234,364 - 90,240,640 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,056,818 - 95,063,078 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,142,367 - 68,148,637 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11773,700,597 - 73,706,492 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1773,700,597 - 73,706,492 (+)Ensemblpanpan1.1panPan2
RPL38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,161,862 - 6,169,705 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,783,504 - 6,789,795 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,834,187 - 6,840,190 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.196,874,786 - 6,880,977 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,978,191 - 6,984,645 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.097,038,192 - 7,044,695 (-)NCBIUU_Cfam_GSD_1.0
RPL38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,884,902 - 6,898,764 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,884,899 - 6,889,966 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,911,975 - 6,917,043 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11647,425,014 - 47,432,401 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607718,239,515 - 18,245,756 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,180,197 - 4,198,482 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,180,507 - 4,196,514 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000027805   ⟹   ENSSTOP00000023708
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936655242,123 - 246,415 (-)Ensembl
RefSeq Acc Id: XM_005335977   ⟹   XP_005336034
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056026,744,442 - 6,748,616 (-)NCBI
SpeTri2.0NW_004936655242,259 - 246,392 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005335978   ⟹   XP_005336035
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056026,744,442 - 6,748,618 (-)NCBI
SpeTri2.0NW_004936655242,259 - 246,416 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005336034 (Get FASTA)   NCBI Sequence Viewer  
  XP_005336035 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000023708.2
GenBank Protein KAG3268561 (Get FASTA)   NCBI Sequence Viewer  
  KAG3268562 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005336035   ⟸   XM_005335978
- UniProtKB: I3NH61 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005336034   ⟸   XM_005335977
- UniProtKB: I3NH61 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000023708   ⟸   ENSSTOT00000027805


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019394 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027805.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.720.90 UniProtKB/TrEMBL
InterPro Ribosomal_L38e UniProtKB/TrEMBL
  Ribosomal_L38e_sf UniProtKB/TrEMBL
NCBI Gene Rpl38 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L38 UniProtKB/TrEMBL
  PTHR10965 UniProtKB/TrEMBL
Pfam Ribosomal_L38e UniProtKB/TrEMBL
UniProt I3NH61 ENTREZGENE, UniProtKB/TrEMBL