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Gene: SLC35D2 (solute carrier family 35 member D2) Pan paniscus

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Symbol:

SLC35D2

Name:

solute carrier family 35 member D2

RGD ID:

11863026

Description:

ENCODES a protein that exhibits nucleotide-sugar transmembrane transporter activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nucleotide sugar transporter SLC35D2; UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	43,066,359 - 43,129,527 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	43,068,734 - 43,131,905 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	67,411,201 - 67,481,593 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	95,541,092 - 95,603,415 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC35D2	Bonobo	intellectual disability		ISO	SLC35D2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC35D2	Bonobo	heparan sulfate proteoglycan biosynthetic process	acts_upstream_of_positive_effect	ISO	SLC35D2 (Homo sapiens)	9068941	PMID:15082721	UniProt	PMID:15082721

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC35D2	Bonobo	Golgi apparatus	located_in	ISO	SLC35D2 (Homo sapiens)	9068941		HPA	GO_REF:0000052
SLC35D2	Bonobo	Golgi membrane	is_active_in	ISO	SLC35D2 (Homo sapiens)	9068941	PMID:15082721	UniProt	PMID:15082721

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC35D2	Bonobo	nucleotide-sugar transmembrane transporter activity	enables	ISO	SLC35D2 (Homo sapiens)	9068941	PMID:15082721 and PMID:15607426	Reactome	PMID:15082721 and PMID:15607426

PMID:30032202

SLC35D2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	43,066,359 - 43,129,527 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	43,068,734 - 43,131,905 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	67,411,201 - 67,481,593 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	95,541,092 - 95,603,415 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

SLC35D2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	96,313,444 - 96,383,711 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	96,313,444 - 96,383,711 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	99,075,726 - 99,145,993 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	98,122,809 - 98,185,758 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	96,162,543 - 96,225,492	NCBI
Celera	9	69,524,567 - 69,587,574 (-)	NCBI		Celera
Cytogenetic Map	9	q22.32	NCBI
HuRef	9	68,694,273 - 68,756,998 (-)	NCBI		HuRef
CHM1_1	9	99,229,454 - 99,292,473 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	108,485,153 - 108,555,432 (-)	NCBI		T2T-CHM13v2.0

Slc35d2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	64,244,122 - 64,277,195 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	64,244,122 - 64,277,182 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	64,096,308 - 64,129,381 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	64,096,308 - 64,129,368 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	64,197,618 - 64,230,638 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	64,106,787 - 64,138,533 (-)	NCBI		MGSCv36	mm8
MGSCv36	13	62,922,313 - 62,954,131 (-)	NCBI		MGSCv36	mm8
Celera	13	65,760,015 - 65,793,359 (-)	NCBI		Celera
Cytogenetic Map	13	B3	NCBI
cM Map	13	33.26	NCBI

Slc35d2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	992,153 - 1,025,476 (+)	NCBI		GRCr8
mRatBN7.2	17	987,899 - 1,019,747 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	988,157 - 1,019,743 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	1,006,865 - 1,037,986 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	2,549,439 - 2,580,556 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	1,004,285 - 1,035,404 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	1,618,641 - 1,649,734 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	1,618,189 - 1,648,973 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	1,607,754 - 1,638,846 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	6,515,164 - 6,546,280 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	6,514,746 - 6,546,191 (+)	NCBI
Celera	17	1,497,904 - 1,529,023 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Slc35d2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	23,517,185 - 23,586,694 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	23,544,376 - 23,582,585 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC35D2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	70,487,597 - 70,536,128 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	71,250,628 - 71,299,126 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	70,788,401 - 70,836,855 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	70,600,053 - 70,648,520 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	70,363,312 - 70,411,789 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	71,074,446 - 71,122,895 (+)	NCBI		UU_Cfam_GSD_1.0

Slc35d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	6,065,665 - 6,095,812 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	282,621 - 321,453 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	282,136 - 312,249 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC35D2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	25,738,231 - 25,789,518 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	25,738,208 - 25,789,487 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	29,757,361 - 29,778,433 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Sscrofa10.2	10	29,898,683 - 29,916,032 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC35D2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	106,745,563 - 106,813,003 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	106,745,650 - 106,812,842 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	95,147,258 - 95,207,866 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc35d2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624753	18,169,193 - 18,234,622 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624753	18,169,182 - 18,321,202 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_003811174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034967803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034967804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034967805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034967806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034967807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055117849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063594304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063594305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004673389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004673390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003811174 ⟹ XP_003811222

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	43,066,471 - 43,129,527 (+)	NCBI
NHGRI_mPanPan1	9	43,068,823 - 43,131,905 (+)	NCBI
Mhudiblu_PPA_v0	9	67,418,458 - 67,481,490 (-)	NCBI
PanPan1.1	9	95,541,092 - 95,603,415 (-)	NCBI

Sequence:

show sequence

CGCGGCGCGGCTGCCCTCGCGGGTGGCCCGGCTGCTGTCGGCGCTCTTCTACGGGACCTGCTCCTTCCTCATCGTGCTTGTCAACAAGGCGCTGCTGACCACCTACGGTTTCCCGTCACCAATTTTCC
TTGGAATTGGACAGATGGCAGCCACCATAATGATACTATATGTGTCCAAGCTAAACAAAATCATTCACTTCCCTGATTTTGATAAGAAAATTCCTGTAAAGCTGTTTCCTCTGCCTCTCCTCTACGTT
GGAAACCACATAAGTGGATTATCAAGCACAAGTAAATTAAGCCTACCGATGTTCACCGTGCTCAGGAAATTCACCATTCCACTTACCTTACTTCTGGAAACCATCATACTTGGGAAGCAGTATTCACT
CAACATCATCCTCAGTGTCTTTGCCATTATTCTCGGGGCTTTCATAGCAGCTGGGTCTGACCTTGCTTTTAACTTAGAAGGCTATATTTTTGTATTCCTGAATGATATCTTCACAGCAGCAAATGGAG
TTTATACCAAACAGAAAATGGACCCAAAGGAGCTAGGGAAATACGGAGTACTTTTCTACAATGCCTGCTTCATGATTATCCCAACTCTTATTATTAGTGTCTCCACTGGAGACCTGCAACAGGCTACC
GAATTCAACCAATGGAAGAATGTTCTGTTTATCCTACAGTTTCTTCTTTCCTGTTTTTTGGGGTTTCTGCTGATGTACTCCACGGTTCTGTGCAGCTATTACAATTCAGCCCTGACGACAGCAGTGGT
TGGAGCCATCAAGAATGTATCCGTTGCCTACATTGGGATATTAATCGGTGGAGACTACATTTTCTCTTTGTTAAACTTTGTAGGGTTAAATATTTGCATGGCAGGGGGCTTGAGATATTCCTTTTTAA
CACTGAGCAGCCAGTTAAAACCTAAACCTGTGGGTGAAGAAAACATCTGTTTGGATTTGAAGAGCTAAAGAGTCTGCAGCAGGATTGGAGACTGACTTGTGACTGCGGGCTGGGGGGGCATTCCCAGT
AGGAATGTGAAGCCAGAGGTTTCAGATTCGTGACATCCACCCCCTGGGCAAGTGAGAGCATCTGCAAAATGCAAAGAGAACTACCTCATATGCAGGATGAGCCAATGGCAGTCTCAAGAAAGGTACTT
GGGTGACACCTTACCTGTGGAAAGCAAATCTTTTCAAAATAAGCCACTGGGACTCGGTAGGTGGAGCCCCAGCTGCTCTTCTAGGGACCTATGGGGCCTTCGTGGCATCTCTGTGCTGTGTGCTGGGG
AGGAGGTTGATGTAATGGTGACTCTTTTCTGATCAGCACCTTGGCCGTGATTCCCAAGGTCCCAGCCAAAGCAAAGGGCCAGTTGTTTCAGTTTAAACAGACATGTCTTTAGTCTAATAAAATTAGTT
AACTGCCAGTAAAGTTATTTGTTAGCTTTGATGAAAGCTATGTTGGTATCTTTCCCTAATCATCAAAGTAAATAAAAAATCATTTCTATGTA

hide sequence

RefSeq Acc Id:

XM_034967806 ⟹ XP_034823697

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	43,066,374 - 43,113,430 (+)	NCBI
NHGRI_mPanPan1	9	43,068,734 - 43,115,812 (+)	NCBI
Mhudiblu_PPA_v0	9	67,435,656 - 67,481,593 (-)	NCBI

RefSeq Acc Id:

XM_034967807 ⟹ XP_034823698

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	43,066,464 - 43,129,527 (+)	NCBI
NHGRI_mPanPan1	9	43,068,814 - 43,131,905 (+)	NCBI
Mhudiblu_PPA_v0	9	67,418,451 - 67,481,495 (-)	NCBI

RefSeq Acc Id:

XM_055117849 ⟹ XP_054973824

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	43,066,374 - 43,110,758 (+)	NCBI
NHGRI_mPanPan1	9	43,068,734 - 43,113,134 (+)	NCBI

RefSeq Acc Id:

XM_063594304 ⟹ XP_063450374

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	43,066,455 - 43,129,527 (+)	NCBI

RefSeq Acc Id:

XM_063594305 ⟹ XP_063450375

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	43,066,359 - 43,104,824 (+)	NCBI


Protein RefSeqs	XP_003811222	(Get FASTA)	NCBI Sequence Viewer
	XP_034823697	(Get FASTA)	NCBI Sequence Viewer
	XP_034823698	(Get FASTA)	NCBI Sequence Viewer
	XP_054973824	(Get FASTA)	NCBI Sequence Viewer
	XP_063450374	(Get FASTA)	NCBI Sequence Viewer
	XP_063450375	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_003811222 ⟸ XM_003811174

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAATIMILYVSKLNKIIHFPDFDKKIPVKLFPLPLLYVGNHISGLSSTSKLSLPMFTVLRKFTIPLTLLLETIILGKQYSLNIILSVFAIILGAFIAAGSDLAFNLEGYIFVFLNDIFTAANGVYTKQ
KMDPKELGKYGVLFYNACFMIIPTLIISVSTGDLQQATEFNQWKNVLFILQFLLSCFLGFLLMYSTVLCSYYNSALTTAVVGAIKNVSVAYIGILIGGDYIFSLLNFVGLNICMAGGLRYSFLTLSSQ
LKPKPVGEENICLDLKS

hide sequence

RefSeq Acc Id:	XP_034823698 ⟸ XM_034967807
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_034823697 ⟸ XM_034967806
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_054973824 ⟸ XM_055117849
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063450375 ⟸ XM_063594305
- Peptide Label:	isoform X6

Database	Acc Id	Source(s)
NCBI Gene	SLC35D2	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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