Slc35d2 (solute carrier family 35 member D2) - Rat Genome Database

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Gene: Slc35d2 (solute carrier family 35 member D2) Rattus norvegicus
Analyze
Symbol: Slc35d2
Name: solute carrier family 35 member D2
RGD ID: 1309518
Description: Predicted to enable antiporter activity and pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to be involved in UDP-N-acetylgalactosamine transmembrane transport; UDP-N-acetylglucosamine transmembrane transport; and UDP-glucuronic acid transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35D2 (solute carrier family 35 member D2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC290959; solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2; solute carrier family 35, member D2; UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.217987,899 - 1,019,747 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl17988,157 - 1,019,743 (+)Ensembl
Rnor_6.0171,618,641 - 1,649,734 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl171,618,189 - 1,648,973 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0171,607,754 - 1,638,846 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,515,164 - 6,546,280 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1176,514,746 - 6,546,191 (+)NCBI
Celera171,497,904 - 1,529,023 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Slc35d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.217987,899 - 1,019,747 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl17988,157 - 1,019,743 (+)Ensembl
Rnor_6.0171,618,641 - 1,649,734 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl171,618,189 - 1,648,973 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0171,607,754 - 1,638,846 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,515,164 - 6,546,280 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1176,514,746 - 6,546,191 (+)NCBI
Celera171,497,904 - 1,529,023 (-)NCBICelera
Cytogenetic Map17p14NCBI
SLC35D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38996,313,444 - 96,383,711 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl996,313,444 - 96,383,711 (-)EnsemblGRCh38hg38GRCh38
GRCh37999,075,726 - 99,145,993 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36998,122,809 - 98,185,758 (-)NCBINCBI36hg18NCBI36
Build 34996,162,543 - 96,225,492NCBI
Celera969,524,567 - 69,587,574 (-)NCBI
Cytogenetic Map9q22.32NCBI
HuRef968,694,273 - 68,756,998 (-)NCBIHuRef
CHM1_1999,229,454 - 99,292,473 (-)NCBICHM1_1
Slc35d2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391364,244,122 - 64,277,195 (-)NCBIGRCm39mm39
GRCm39 Ensembl1364,244,122 - 64,277,182 (-)Ensembl
GRCm381364,096,308 - 64,129,381 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1364,096,308 - 64,129,368 (-)EnsemblGRCm38mm10GRCm38
MGSCv371364,197,618 - 64,230,638 (-)NCBIGRCm37mm9NCBIm37
MGSCv361364,106,787 - 64,138,533 (-)NCBImm8
MGSCv361362,922,313 - 62,954,131 (-)NCBImm8
Celera1365,760,015 - 65,793,359 (-)NCBICelera
Cytogenetic Map13B3NCBI
Slc35d2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542223,517,185 - 23,586,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542223,544,376 - 23,582,585 (+)NCBIChiLan1.0ChiLan1.0
SLC35D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1995,541,092 - 95,603,415 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0967,411,201 - 67,481,593 (-)NCBIMhudiblu_PPA_v0panPan3
SLC35D2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1170,487,597 - 70,536,128 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha171,250,628 - 71,299,126 (+)NCBI
ROS_Cfam_1.0170,788,401 - 70,836,855 (+)NCBI
UMICH_Zoey_3.1170,600,053 - 70,648,520 (+)NCBI
UNSW_CanFamBas_1.0170,363,312 - 70,411,789 (+)NCBI
UU_Cfam_GSD_1.0171,074,446 - 71,122,895 (+)NCBI
Slc35d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049446,065,665 - 6,095,812 (-)NCBI
SpeTri2.0NW_004936487282,136 - 312,249 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35D2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11025,738,208 - 25,789,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21029,757,361 - 29,778,433 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21029,898,683 - 29,916,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112106,745,563 - 106,813,003 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl12106,745,650 - 106,812,842 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603895,147,258 - 95,207,866 (+)NCBIVero_WHO_p1.0
Slc35d2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475318,169,182 - 18,321,202 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH132150  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2171,019,003 - 1,019,193 (-)MAPPERmRatBN7.2
Rnor_6.0171,618,752 - 1,618,941NCBIRnor6.0
Rnor_5.0171,608,308 - 1,608,497UniSTSRnor5.0
RGSC_v3.4176,545,980 - 6,546,169UniSTSRGSC3.4
Celera171,498,015 - 1,498,204UniSTS
RH 3.4 Map170.6UniSTS
Cytogenetic Map17p14UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:89
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000036212
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 33 33 2 33 25 11
Low 1 43 24 8 17 8 8 11 74 35 15 8
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000036212   ⟹   ENSRNOP00000038617
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl17988,157 - 1,019,743 (+)Ensembl
Rnor_6.0 Ensembl171,618,189 - 1,648,973 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096960   ⟹   ENSRNOP00000078756
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl17988,157 - 1,019,743 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099057   ⟹   ENSRNOP00000091466
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl17988,157 - 1,019,217 (+)Ensembl
RefSeq Acc Id: NM_001106098   ⟹   NP_001099568
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.217988,183 - 1,019,304 (+)NCBI
Rnor_6.0171,618,641 - 1,648,999 (-)NCBI
Rnor_5.0171,607,754 - 1,638,846 (-)NCBI
RGSC_v3.4176,515,164 - 6,546,280 (+)RGD
Celera171,497,904 - 1,529,023 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253493   ⟹   XP_006253555
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.217987,899 - 1,019,747 (+)NCBI
Rnor_6.0171,619,116 - 1,649,734 (-)NCBI
Rnor_5.0171,607,754 - 1,638,846 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095437   ⟹   XP_038951365
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.217988,194 - 1,019,747 (+)NCBI
RefSeq Acc Id: XM_039095438   ⟹   XP_038951366
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.217987,900 - 1,009,099 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001099568 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253555 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951365 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951366 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL84426 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001099568   ⟸   NM_001106098
- UniProtKB: D4A1T9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253555   ⟸   XM_006253493
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000038617   ⟸   ENSRNOT00000036212
RefSeq Acc Id: XP_038951366   ⟸   XM_039095438
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038951365   ⟸   XM_039095437
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000091466   ⟸   ENSRNOT00000099057
RefSeq Acc Id: ENSRNOP00000078756   ⟸   ENSRNOT00000096960
Protein Domains
TPT

Protein Structures
Name Modeller Protein Id AA Range Protein Structure Video
AF-D4A1T9-F1-model_v2 AlphaFold D4A1T9 1-326 view protein structure  

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700260
Promoter ID:EPDNEW_R10783
Type:multiple initiation site
Name:Slc35d2_1
Description:solute carrier family 35 member D2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0171,648,975 - 1,649,035EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309518 AgrOrtholog
BioCyc Gene G2FUF-10536 BioCyc
Ensembl Genes ENSRNOG00000027229 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000038617 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000091466 ENTREZGENE
Ensembl Transcript ENSRNOT00000036212 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000099057 ENTREZGENE
InterPro DUF250 UniProtKB/TrEMBL
KEGG Report rno:290959 UniProtKB/TrEMBL
NCBI Gene 290959 ENTREZGENE
Pfam TPT UniProtKB/TrEMBL
PhenoGen Slc35d2 PhenoGen
UniProt D4A1T9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc35d2  solute carrier family 35 member D2  Slc35d2  solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc35d2  solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2  Slc35d2  solute carrier family 35, member D2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Slc35d2  solute carrier family 35, member D2   Slc35d2_predicted  solute carrier family 35, member D2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Slc35d2_predicted  solute carrier family 35, member D2 (predicted)      Symbol and Name status set to approved 70820 APPROVED