CNTNAP1 (contactin associated protein 1) - Rat Genome Database

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Gene: CNTNAP1 (contactin associated protein 1) Pan paniscus
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Symbol: CNTNAP1
Name: contactin associated protein 1
RGD ID: 11855206
Description: ENCODES a protein that exhibits SH3 domain binding (ortholog); INVOLVED IN neuron projection development (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4E (ortholog); Congenital Hypomyelinating Neuropathy 3 (ortholog); distal arthrogryposis type 1A (ortholog); FOUND IN axon (ortholog); glutamatergic synapse (ortholog); presynaptic active zone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: contactin-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,286,159 - 22,302,308 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,176,186 - 24,194,783 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,618,294 - 14,635,193 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,842,577 - 14,858,896 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,842,577 - 14,858,896 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CNTNAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,286,159 - 22,302,308 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,176,186 - 24,194,783 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,618,294 - 14,635,193 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,842,577 - 14,858,896 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,842,577 - 14,858,896 (-)Ensemblpanpan1.1panPan2
CNTNAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,682,531 - 42,699,993 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,682,531 - 42,699,993 (+)EnsemblGRCh38hg38GRCh38
GRCh371740,834,549 - 40,852,011 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361738,088,158 - 38,105,358 (+)NCBINCBI36Build 36hg18NCBI36
Build 341738,088,157 - 38,105,358NCBI
Celera1737,490,091 - 37,507,480 (+)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1736,599,698 - 36,617,086 (+)NCBIHuRef
CHM1_11741,070,271 - 41,087,626 (+)NCBICHM1_1
T2T-CHM13v2.01743,539,668 - 43,557,130 (+)NCBIT2T-CHM13v2.0
Cntnap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,065,429 - 101,081,550 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,061,349 - 101,081,550 (+)EnsemblGRCm39 Ensembl
GRCm3811101,174,617 - 101,190,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,170,523 - 101,190,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711101,037,431 - 101,052,034 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611100,988,649 - 101,005,937 (+)NCBIMGSCv36mm8
Celera11112,472,244 - 112,486,836 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1164.33NCBI
Cntnap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,610,140 - 86,625,896 (+)NCBIGRCr8
mRatBN7.21086,109,850 - 86,125,612 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,111,643 - 86,125,611 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,148,069 - 91,162,038 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,626,872 - 90,640,834 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,020,029 - 86,033,999 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,087,904 - 89,103,615 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,089,646 - 89,103,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,888,142 - 88,902,111 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,185,756 - 90,210,837 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11090,212,559 - 90,225,201 (+)NCBI
Celera1084,829,245 - 84,843,011 (+)NCBICelera
Cytogenetic Map10q31NCBI
Cntnap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,536,416 - 16,547,213 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,535,924 - 16,547,800 (+)NCBIChiLan1.0ChiLan1.0
CNTNAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,293,184 - 20,307,708 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,293,170 - 20,307,662 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,755,142 - 19,769,755 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,012,211 - 21,026,834 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl921,012,224 - 21,026,866 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,798,156 - 19,812,758 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0920,063,318 - 20,077,931 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0920,167,329 - 20,181,942 (-)NCBIUU_Cfam_GSD_1.0
Cntnap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,645,016 - 19,662,302 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,412,878 - 17,429,041 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,412,837 - 17,430,123 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTNAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,141,641 - 20,157,044 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,141,222 - 20,157,341 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,378,999 - 20,386,573 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNTNAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,590,043 - 63,606,805 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,591,119 - 63,607,579 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,383,133 - 34,399,997 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cntnap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,470,760 - 1,481,973 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,470,234 - 1,482,066 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000036759   ⟹   ENSPPAP00000014084
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1714,842,577 - 14,858,896 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000036766   ⟹   ENSPPAP00000014090
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1714,843,653 - 14,850,360 (-)Ensembl
RefSeq Acc Id: XM_003813902   ⟹   XP_003813950
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,286,159 - 22,302,308 (-)NCBI
NHGRI_mPanPan11724,176,186 - 24,194,783 (-)NCBI
Mhudiblu_PPA_v01714,618,294 - 14,635,193 (-)NCBI
PanPan1.11714,842,577 - 14,858,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008966499   ⟹   XP_008964747
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,286,159 - 22,301,523 (-)NCBI
NHGRI_mPanPan11724,176,360 - 24,191,794 (-)NCBI
Mhudiblu_PPA_v01714,618,294 - 14,633,907 (-)NCBI
PanPan1.11714,842,577 - 14,858,558 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003813950 (Get FASTA)   NCBI Sequence Viewer  
  XP_008964747 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000014084
  ENSPPAP00000014084.1
  ENSPPAP00000014090.1
RefSeq Acc Id: XP_003813950   ⟸   XM_003813902
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A9Y5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008964747   ⟸   XM_008966499
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSPPAP00000014090   ⟸   ENSPPAT00000036766
Ensembl Acc Id: ENSPPAP00000014084   ⟸   ENSPPAT00000036759
Protein Domains
EGF-like   F5/8 type C   Fibrinogen C-terminal   Laminin G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030181 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036759.1 UniProtKB/TrEMBL
  ENSPPAT00000036766.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.1000 UniProtKB/TrEMBL
  2.60.120.200 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Laminin_G UniProtKB/TrEMBL
  Neurexin-like UniProtKB/TrEMBL
  Neurexin-related_CASP UniProtKB/TrEMBL
KEGG Report pps:100967535 UniProtKB/TrEMBL
NCBI Gene CNTNAP1 ENTREZGENE
PANTHER PIKACHURIN-LIKE PROTEIN UniProtKB/TrEMBL
  PTHR15036:SF43 UniProtKB/TrEMBL
Pfam F5_F8_type_C UniProtKB/TrEMBL
  Laminin_G_2 UniProtKB/TrEMBL
PROSITE EGF_3 UniProtKB/TrEMBL
  FA58C_1 UniProtKB/TrEMBL
  FA58C_2 UniProtKB/TrEMBL
  FA58C_3 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
  LAM_G_DOMAIN UniProtKB/TrEMBL
SMART 4.1m UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  LamG UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF56496 UniProtKB/TrEMBL
UniProt A0A2R9A9Y5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AA04_PANPA UniProtKB/TrEMBL