Cntnap1 (contactin associated protein 1) - Rat Genome Database

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Gene: Cntnap1 (contactin associated protein 1) Chinchilla lanigera
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Symbol: Cntnap1
Name: contactin associated protein 1
RGD ID: 9000382
Description: ENCODES a protein that exhibits SH3 domain binding (ortholog); INVOLVED IN axonogenesis (ortholog); central nervous system myelination (ortholog); cytoskeleton organization (ortholog); ASSOCIATED WITH Congenital Hypomyelinating Neuropathy 3 (ortholog); distal arthrogryposis type 1A (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN axon (ortholog); integral component of membrane (ortholog); paranode region of axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: contactin-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,536,416 - 16,547,213 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,535,924 - 16,547,800 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Cntnap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,536,416 - 16,547,213 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,535,924 - 16,547,800 (+)NCBIChiLan1.0ChiLan1.0
CNTNAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1742,682,531 - 42,699,993 (+)EnsemblGRCh38hg38GRCh38
GRCh381742,679,767 - 42,699,993 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371740,834,549 - 40,852,011 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361738,088,158 - 38,105,358 (+)NCBINCBI36hg18NCBI36
Build 341738,088,157 - 38,105,358NCBI
Celera1737,490,091 - 37,507,480 (+)NCBI
Cytogenetic Map17q21.2NCBI
HuRef1736,599,698 - 36,617,086 (+)NCBIHuRef
CHM1_11741,070,271 - 41,087,626 (+)NCBICHM1_1
Cntnap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,065,429 - 101,081,550 (+)NCBIGRCm39mm39
GRCm39 Ensembl11101,061,349 - 101,081,550 (+)Ensembl
GRCm3811101,174,617 - 101,190,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,170,523 - 101,190,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711101,037,431 - 101,052,034 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611100,988,649 - 101,005,937 (+)NCBImm8
Celera11112,472,244 - 112,486,836 (+)NCBICelera
Cytogenetic Map11DNCBI
Cntnap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21086,109,850 - 86,125,612 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1086,111,643 - 86,125,611 (+)Ensembl
Rnor_6.01089,087,904 - 89,103,615 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,089,646 - 89,103,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,888,142 - 88,902,111 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,185,756 - 90,210,837 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11090,212,559 - 90,225,201 (+)NCBI
Celera1084,829,245 - 84,843,011 (+)NCBICelera
Cytogenetic Map10q31NCBI
CNTNAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11714,842,577 - 14,858,896 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,842,577 - 14,858,896 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01714,618,294 - 14,635,193 (-)NCBIMhudiblu_PPA_v0panPan3
CNTNAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,293,184 - 20,307,708 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,293,170 - 20,307,662 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,755,142 - 19,769,755 (-)NCBI
ROS_Cfam_1.0921,012,211 - 21,026,834 (-)NCBI
UMICH_Zoey_3.1919,798,156 - 19,812,758 (-)NCBI
UNSW_CanFamBas_1.0920,063,318 - 20,077,931 (-)NCBI
UU_Cfam_GSD_1.0920,167,329 - 20,181,942 (-)NCBI
Cntnap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,645,016 - 19,662,302 (-)NCBI
SpeTri2.0NW_00493649017,412,837 - 17,430,123 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTNAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,141,641 - 20,157,044 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,141,222 - 20,157,341 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,378,999 - 20,386,573 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNTNAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,590,043 - 63,606,805 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,591,119 - 63,607,579 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607734,383,133 - 34,399,997 (-)NCBIVero_WHO_p1.0
Cntnap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247951,470,234 - 1,482,066 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000021654   ⟹   ENSCLAP00000021451
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545116,536,416 - 16,547,213 (+)Ensembl
RefSeq Acc Id: XM_005394470   ⟹   XP_005394527
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545116,535,924 - 16,547,800 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005394527 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005394527   ⟸   XM_005394470
- Sequence:
RefSeq Acc Id: ENSCLAP00000021451   ⟸   ENSCLAT00000021654


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014690 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000021451 ENTREZGENE
Ensembl Transcript ENSCLAT00000021654 ENTREZGENE
NCBI Gene Cntnap1 ENTREZGENE