CNTNAP1 (contactin associated protein 1) - Rat Genome Database

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Gene: CNTNAP1 (contactin associated protein 1) Sus scrofa
Analyze
Symbol: CNTNAP1
Name: contactin associated protein 1
RGD ID: 14063217
Description: ENCODES a protein that exhibits SH3 domain binding (ortholog); INVOLVED IN neuron projection development (ortholog); ASSOCIATED WITH Congenital Hypomyelinating Neuropathy 3 (ortholog); distal arthrogryposis type 1A (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN axon (ortholog); glutamatergic synapse (ortholog); presynaptic active zone (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: contactin-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,141,641 - 20,157,044 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,141,222 - 20,157,341 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,378,999 - 20,386,573 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CNTNAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,141,641 - 20,157,044 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,141,222 - 20,157,341 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,378,999 - 20,386,573 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNTNAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,682,531 - 42,699,993 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,682,531 - 42,699,993 (+)EnsemblGRCh38hg38GRCh38
GRCh371740,834,549 - 40,852,011 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361738,088,158 - 38,105,358 (+)NCBINCBI36Build 36hg18NCBI36
Build 341738,088,157 - 38,105,358NCBI
Celera1737,490,091 - 37,507,480 (+)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1736,599,698 - 36,617,086 (+)NCBIHuRef
CHM1_11741,070,271 - 41,087,626 (+)NCBICHM1_1
T2T-CHM13v2.01743,539,668 - 43,557,130 (+)NCBIT2T-CHM13v2.0
Cntnap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,065,429 - 101,081,550 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,061,349 - 101,081,550 (+)EnsemblGRCm39 Ensembl
GRCm3811101,174,617 - 101,190,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,170,523 - 101,190,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711101,037,431 - 101,052,034 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611100,988,649 - 101,005,937 (+)NCBIMGSCv36mm8
Celera11112,472,244 - 112,486,836 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1164.33NCBI
Cntnap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,610,140 - 86,625,896 (+)NCBIGRCr8
mRatBN7.21086,109,850 - 86,125,612 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,111,643 - 86,125,611 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,148,069 - 91,162,038 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,626,872 - 90,640,834 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,020,029 - 86,033,999 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,087,904 - 89,103,615 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,089,646 - 89,103,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,888,142 - 88,902,111 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,185,756 - 90,210,837 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11090,212,559 - 90,225,201 (+)NCBI
Celera1084,829,245 - 84,843,011 (+)NCBICelera
Cytogenetic Map10q31NCBI
Cntnap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,536,416 - 16,547,213 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,535,924 - 16,547,800 (+)NCBIChiLan1.0ChiLan1.0
CNTNAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,286,159 - 22,302,308 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,176,186 - 24,194,783 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,618,294 - 14,635,193 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,842,577 - 14,858,896 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,842,577 - 14,858,896 (-)Ensemblpanpan1.1panPan2
CNTNAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,293,184 - 20,307,708 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,293,170 - 20,307,662 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,755,142 - 19,769,755 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,012,211 - 21,026,834 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl921,012,224 - 21,026,866 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,798,156 - 19,812,758 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0920,063,318 - 20,077,931 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0920,167,329 - 20,181,942 (-)NCBIUU_Cfam_GSD_1.0
Cntnap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,645,016 - 19,662,302 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,412,878 - 17,429,041 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,412,837 - 17,430,123 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTNAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,590,043 - 63,606,805 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,591,119 - 63,607,579 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,383,133 - 34,399,997 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cntnap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,470,760 - 1,481,973 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,470,234 - 1,482,066 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CNTNAP1
306 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 18
Low 9 3 3 5 2 5 2 3 3
Below cutoff 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000018933   ⟹   ENSSSCP00000018428
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,142,178 - 20,157,044 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000070576   ⟹   ENSSSCP00000062609
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,141,641 - 20,156,970 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000073252   ⟹   ENSSSCP00000069501
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,141,641 - 20,156,970 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000082323   ⟹   ENSSSCP00000066575
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,141,641 - 20,156,970 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000103743   ⟹   ENSSSCP00000074864
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,141,641 - 20,156,970 (-)Ensembl
RefSeq Acc Id: XM_021066979   ⟹   XP_020922638
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,141,222 - 20,157,341 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020922638   ⟸   XM_021066979
- UniProtKB: A0A4X1TZ75 (UniProtKB/TrEMBL),   A0A5G2QWQ0 (UniProtKB/TrEMBL),   A0A8D1JMZ1 (UniProtKB/TrEMBL),   A0A8D0YY84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000062609   ⟸   ENSSSCT00000070576
RefSeq Acc Id: ENSSSCP00000018428   ⟸   ENSSSCT00000018933
RefSeq Acc Id: ENSSSCP00000069501   ⟸   ENSSSCT00000073252
RefSeq Acc Id: ENSSSCP00000066575   ⟸   ENSSSCT00000082323
RefSeq Acc Id: ENSSSCP00000074864   ⟸   ENSSSCT00000103743
Protein Domains
EGF-like   F5/8 type C   Fibrinogen C-terminal   Laminin G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017393 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005012422 UniProtKB/TrEMBL
  ENSSSCG00025057684 UniProtKB/TrEMBL
  ENSSSCG00030070919 UniProtKB/TrEMBL
  ENSSSCG00035016695 UniProtKB/TrEMBL
  ENSSSCG00040028358 UniProtKB/TrEMBL
  ENSSSCG00045039041 UniProtKB/TrEMBL
  ENSSSCG00050062944 UniProtKB/TrEMBL
  ENSSSCG00055026649 UniProtKB/TrEMBL
  ENSSSCG00060045105 UniProtKB/TrEMBL
  ENSSSCG00065003560 UniProtKB/TrEMBL
  ENSSSCG00070012838 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018933.4 UniProtKB/TrEMBL
  ENSSSCT00000070576 ENTREZGENE
  ENSSSCT00000070576.1 UniProtKB/TrEMBL
  ENSSSCT00000073252.2 UniProtKB/TrEMBL
  ENSSSCT00000082323.1 UniProtKB/TrEMBL
  ENSSSCT00000103743.1 UniProtKB/TrEMBL
  ENSSSCT00005020169.1 UniProtKB/TrEMBL
  ENSSSCT00005020252.1 UniProtKB/TrEMBL
  ENSSSCT00005020285.1 UniProtKB/TrEMBL
  ENSSSCT00025078979.1 UniProtKB/TrEMBL
  ENSSSCT00025079451.1 UniProtKB/TrEMBL
  ENSSSCT00025079820.1 UniProtKB/TrEMBL
  ENSSSCT00030099247.1 UniProtKB/TrEMBL
  ENSSSCT00035021375.1 UniProtKB/TrEMBL
  ENSSSCT00040038034.1 UniProtKB/TrEMBL
  ENSSSCT00045067868.1 UniProtKB/TrEMBL
  ENSSSCT00045067881.1 UniProtKB/TrEMBL
  ENSSSCT00050085728.1 UniProtKB/TrEMBL
  ENSSSCT00055052714.1 UniProtKB/TrEMBL
  ENSSSCT00055052878.1 UniProtKB/TrEMBL
  ENSSSCT00055052972.1 UniProtKB/TrEMBL
  ENSSSCT00060061186.1 UniProtKB/TrEMBL
  ENSSSCT00065004857.1 UniProtKB/TrEMBL
  ENSSSCT00070025091.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.1000 UniProtKB/TrEMBL
  2.60.120.200 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Laminin_G UniProtKB/TrEMBL
  Neurexin-like UniProtKB/TrEMBL
NCBI Gene CNTNAP1 ENTREZGENE
PANTHER NEUREXIN 1, ISOFORM F UniProtKB/TrEMBL
  PIKACHURIN-LIKE PROTEIN UniProtKB/TrEMBL
Pfam F5_F8_type_C UniProtKB/TrEMBL
  Laminin_G_2 UniProtKB/TrEMBL
PROSITE EGF_3 UniProtKB/TrEMBL
  FA58C_1 UniProtKB/TrEMBL
  FA58C_2 UniProtKB/TrEMBL
  FA58C_3 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
  LAM_G_DOMAIN UniProtKB/TrEMBL
SMART 4.1m UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  LamG UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF56496 UniProtKB/TrEMBL
UniProt A0A4X1TZ75 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QPE9_PIG UniProtKB/TrEMBL
  A0A5G2QWQ0 ENTREZGENE
  A0A8D0SPT6_PIG UniProtKB/TrEMBL
  A0A8D0T0X2_PIG UniProtKB/TrEMBL
  A0A8D0Y329_PIG UniProtKB/TrEMBL
  A0A8D0YVB9_PIG UniProtKB/TrEMBL
  A0A8D0YY84 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JMZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RSS9_PIG UniProtKB/TrEMBL
  A0A8W4F7V6_PIG UniProtKB/TrEMBL
UniProt Secondary A0A5G2QWQ0 UniProtKB/TrEMBL
  A0A5G2QX99 UniProtKB/TrEMBL
  F1S1F0 UniProtKB/TrEMBL
VGNC ID VGNC:86849 ENTREZGENE