CLC (Charcot-Leyden crystal galectin) - Rat Genome Database

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Gene: CLC (Charcot-Leyden crystal galectin) Pan paniscus
Analyze
Symbol: CLC
Name: Charcot-Leyden crystal galectin
RGD ID: 11848625
Description: ENCODES a protein that exhibits cysteine-type endopeptidase activity involved in apoptotic process (ortholog); identical protein binding (ortholog); lysophospholipase activity (ortholog); INVOLVED IN regulation of activated T cell proliferation (ortholog); regulation of T cell anergy (ortholog); regulation of T cell cytokine production (ortholog); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: galectin-10; LOC100989462
RGD Orthologs
Human
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214115,802,497 - 115,810,222 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113114,482,739 - 114,488,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01395,374,662 - 95,375,973 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113114,440,365 - 114,441,215 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CLC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214115,802,497 - 115,810,222 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113114,482,739 - 114,488,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01395,374,662 - 95,375,973 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113114,440,365 - 114,441,215 (+)NCBIpanpan1.1PanPan1.1panPan2
CLC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381939,731,255 - 39,738,029 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1939,731,255 - 39,738,029 (-)EnsemblGRCh38hg38GRCh38
GRCh371940,221,895 - 40,228,669 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,913,735 - 44,920,508 (-)NCBINCBI36Build 36hg18NCBI36
Build 341944,913,735 - 44,920,508NCBI
Celera1937,023,465 - 37,030,234 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1936,668,196 - 36,674,971 (-)NCBIHuRef
CHM1_11940,222,535 - 40,229,311 (-)NCBICHM1_1
T2T-CHM13v2.01942,535,528 - 42,542,305 (-)NCBIT2T-CHM13v2.0
LGALS13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,205,158 - 48,209,867 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,205,158 - 48,209,859 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,943,651 - 43,948,367 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_055097083   ⟹   XP_054953058
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v214115,802,497 - 115,810,222 (+)NCBI
NHGRI_mPanPan113114,482,739 - 114,488,017 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054953058 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_054953058   ⟸   XM_055097083


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC100989462 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 CLC  Charcot-Leyden crystal galectin  LOC100989462  galectin-10  Symbol and/or name change 5135510 APPROVED