LGALS13 (lectin, galactoside-binding, soluble, 13) - Rat Genome Database

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Gene: LGALS13 (lectin, galactoside-binding, soluble, 13) Sus scrofa
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Symbol: LGALS13
Name: lectin, galactoside-binding, soluble, 13
RGD ID: 14275671
Description: ENCODES a protein that exhibits lysophospholipase activity (ortholog); INVOLVED IN regulation of activated T cell proliferation (inferred); regulation of T cell anergy (inferred); regulation of T cell cytokine production (inferred); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog); FOUND IN cytosol (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: galactoside-binding soluble lectin 13; lectin galactoside-binding soluble 13 protein
RGD Orthologs
Human
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,205,158 - 48,209,867 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,205,158 - 48,209,859 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,943,651 - 43,948,367 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LGALS13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,205,158 - 48,209,867 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,205,158 - 48,209,859 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,943,651 - 43,948,367 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381939,731,255 - 39,738,029 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1939,731,255 - 39,738,029 (-)EnsemblGRCh38hg38GRCh38
GRCh371940,221,895 - 40,228,669 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,913,735 - 44,920,508 (-)NCBINCBI36Build 36hg18NCBI36
Build 341944,913,735 - 44,920,508NCBI
Celera1937,023,465 - 37,030,234 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1936,668,196 - 36,674,971 (-)NCBIHuRef
CHM1_11940,222,535 - 40,229,311 (-)NCBICHM1_1
T2T-CHM13v2.01942,535,528 - 42,542,305 (-)NCBIT2T-CHM13v2.0
CLC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214115,802,497 - 115,810,222 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113114,482,739 - 114,488,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01395,374,662 - 95,375,973 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113114,440,365 - 114,441,215 (+)NCBIpanpan1.1PanPan1.1panPan2

Variants

.
Variants in LGALS13
173 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
nervous system
1 1 1

Sequence


Ensembl Acc Id: ENSSSCT00000003314   ⟹   ENSSSCP00000003232
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl648,205,158 - 48,209,867 (-)Ensembl
RefSeq Acc Id: NM_001142841   ⟹   NP_001136313
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1648,205,158 - 48,209,859 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001136313   ⟸   NM_001142841
- UniProtKB: B7U2G5 (UniProtKB/TrEMBL),   A0A4X1SS19 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000003232   ⟸   ENSSSCT00000003314
Protein Domains
Galectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002983 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015026436 UniProtKB/TrEMBL
  ENSSSCG00025041173 UniProtKB/TrEMBL
  ENSSSCG00030068180 UniProtKB/TrEMBL
  ENSSSCG00035007620 UniProtKB/TrEMBL
  ENSSSCG00040016976 UniProtKB/TrEMBL
  ENSSSCG00045031080 UniProtKB/TrEMBL
  ENSSSCG00050008076 UniProtKB/TrEMBL
  ENSSSCG00055008804 UniProtKB/TrEMBL
  ENSSSCG00060054286 UniProtKB/TrEMBL
  ENSSSCG00065057956 UniProtKB/TrEMBL
  ENSSSCG00070003660 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003314 ENTREZGENE
  ENSSSCT00000003314.4 UniProtKB/TrEMBL
  ENSSSCT00015035042.1 UniProtKB/TrEMBL
  ENSSSCT00015035115.1 UniProtKB/TrEMBL
  ENSSSCT00025055822.1 UniProtKB/TrEMBL
  ENSSSCT00030095341.1 UniProtKB/TrEMBL
  ENSSSCT00030095358.1 UniProtKB/TrEMBL
  ENSSSCT00035009491.1 UniProtKB/TrEMBL
  ENSSSCT00040022849.1 UniProtKB/TrEMBL
  ENSSSCT00040022865.1 UniProtKB/TrEMBL
  ENSSSCT00045052947.1 UniProtKB/TrEMBL
  ENSSSCT00050011012.1 UniProtKB/TrEMBL
  ENSSSCT00050011017.1 UniProtKB/TrEMBL
  ENSSSCT00055017182.1 UniProtKB/TrEMBL
  ENSSSCT00055017212.1 UniProtKB/TrEMBL
  ENSSSCT00060073889.1 UniProtKB/TrEMBL
  ENSSSCT00060073894.1 UniProtKB/TrEMBL
  ENSSSCT00065079287.1 UniProtKB/TrEMBL
  ENSSSCT00065079294.1 UniProtKB/TrEMBL
  ENSSSCT00070006848.1 UniProtKB/TrEMBL
  ENSSSCT00070006852.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  Galectin-like UniProtKB/TrEMBL
  Galectin_CRD UniProtKB/TrEMBL
KEGG Report ssc:100217392 UniProtKB/TrEMBL
NCBI Gene LGALS13 ENTREZGENE
PANTHER PTHR11346 UniProtKB/TrEMBL
  PTHR11346:SF15 UniProtKB/TrEMBL
Pfam Gal-bind_lectin UniProtKB/TrEMBL
PROSITE GALECTIN UniProtKB/TrEMBL
SMART Gal-bind_lectin UniProtKB/TrEMBL
  GLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt A0A4X1SS19 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SS82_PIG UniProtKB/TrEMBL
  A0A8D0N763_PIG UniProtKB/TrEMBL
  B7U2G5 ENTREZGENE, UniProtKB/TrEMBL