BORCS5 (BLOC-1 related complex subunit 5) - Rat Genome Database

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Gene: BORCS5 (BLOC-1 related complex subunit 5) Pan paniscus
Analyze
Symbol: BORCS5
Name: BLOC-1 related complex subunit 5
RGD ID: 11844995
Description: INVOLVED IN lysosome localization (inferred); organelle transport along microtubule (inferred); positive regulation of anterograde synaptic vesicle transport (inferred); ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); autosomal dominant intellectual developmental disorder 6 (ortholog); colorectal adenocarcinoma (ortholog); FOUND IN BORC complex (ortholog); plus-end kinesin complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BLOC-1-related complex subunit 5; LOH12CR1; loss of heterozygosity, 12, chromosomal region 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21017,823,289 - 17,950,691 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11217,820,048 - 17,950,110 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,380,071 - 12,488,735 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11212,749,085 - 12,857,043 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1212,749,104 - 12,857,043 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BORCS5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21017,823,289 - 17,950,691 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11217,820,048 - 17,950,110 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,380,071 - 12,488,735 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11212,749,085 - 12,857,043 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1212,749,104 - 12,857,043 (+)Ensemblpanpan1.1panPan2
BORCS5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,357,078 - 12,471,233 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,357,078 - 12,471,233 (+)EnsemblGRCh38hg38GRCh38
GRCh371212,510,012 - 12,624,167 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361212,401,322 - 12,511,105 (+)NCBINCBI36Build 36hg18NCBI36
Build 341212,401,321 - 12,511,105NCBI
Celera1217,653,635 - 17,763,988 (+)NCBICelera
Cytogenetic Map12p13.2NCBI
HuRef1212,275,116 - 12,385,078 (+)NCBIHuRef
CHM1_11212,475,001 - 12,584,853 (+)NCBICHM1_1
T2T-CHM13v2.01212,226,205 - 12,340,409 (+)NCBIT2T-CHM13v2.0
Borcs5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396134,616,475 - 134,688,147 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6134,616,473 - 134,688,150 (+)EnsemblGRCm39 Ensembl
GRCm386134,639,512 - 134,711,184 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6134,639,510 - 134,711,187 (+)EnsemblGRCm38mm10GRCm38
MGSCv376134,589,530 - 134,661,202 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366134,606,674 - 134,676,863 (+)NCBIMGSCv36mm8
Celera6137,587,872 - 137,663,447 (+)NCBICelera
Cytogenetic Map6G1NCBI
cM Map665.77NCBI
Borcs5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84169,190,025 - 169,272,335 (+)NCBIGRCr8
mRatBN7.24167,458,640 - 167,543,556 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4167,473,177 - 167,540,993 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4173,766,789 - 173,834,399 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04169,549,869 - 169,617,480 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04168,175,487 - 168,241,125 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,396,034 - 168,466,968 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,396,775 - 168,464,352 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04232,664,705 - 232,748,296 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44171,545,892 - 171,614,610 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14171,790,759 - 171,858,467 (+)NCBI
Celera4156,072,931 - 156,138,582 (+)NCBICelera
Cytogenetic Map4q43NCBI
Borcs5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554139,309,861 - 9,399,378 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554139,309,766 - 9,399,378 (+)NCBIChiLan1.0ChiLan1.0
BORCS5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12733,839,345 - 33,949,056 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2733,837,318 - 33,934,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2712,496,789 - 12,606,369 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02734,146,425 - 34,256,421 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2734,144,391 - 34,242,102 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12734,039,090 - 34,148,751 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02733,988,879 - 34,098,859 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02712,228,438 - 12,340,603 (+)NCBIUU_Cfam_GSD_1.0
Borcs5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494595,078,900 - 95,178,702 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365874,806,113 - 4,906,411 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365874,806,537 - 4,906,301 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BORCS5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl559,970,260 - 60,072,942 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1559,969,806 - 60,072,976 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BORCS5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,259,080 - 12,363,576 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1112,259,495 - 12,364,740 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606922,956,199 - 23,063,114 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Borcs5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475225,382,796 - 25,504,989 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475225,418,206 - 25,504,658 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000039885   ⟹   ENSPPAP00000017185
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1212,749,104 - 12,857,043 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000039887   ⟹   ENSPPAP00000017187
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1212,749,474 - 12,856,583 (+)Ensembl
RefSeq Acc Id: XM_034935400   ⟹   XP_034791291
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,823,373 - 17,932,124 (+)NCBI
NHGRI_mPanPan11217,820,193 - 17,928,883 (+)NCBI
Mhudiblu_PPA_v01212,380,071 - 12,488,735 (+)NCBI
RefSeq Acc Id: XM_055095413   ⟹   XP_054951388
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,823,428 - 17,950,691 (+)NCBI
NHGRI_mPanPan11217,820,193 - 17,950,110 (+)NCBI
RefSeq Acc Id: XM_063593361   ⟹   XP_063449431
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,823,373 - 17,950,691 (+)NCBI
RefSeq Acc Id: XM_063593362   ⟹   XP_063449432
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,823,373 - 17,950,691 (+)NCBI
RefSeq Acc Id: XM_063593363   ⟹   XP_063449433
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,823,373 - 17,950,691 (+)NCBI
RefSeq Acc Id: XM_063593364   ⟹   XP_063449434
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,823,434 - 17,950,691 (+)NCBI
RefSeq Acc Id: XM_063593365   ⟹   XP_063449435
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,823,289 - 17,950,691 (+)NCBI
RefSeq Acc Id: XM_063593366   ⟹   XP_063449436
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,823,289 - 17,950,691 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034791291   ⟸   XM_034935400
- Peptide Label: isoform X4
- UniProtKB: A0A2R9AIJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000017187   ⟸   ENSPPAT00000039887
RefSeq Acc Id: ENSPPAP00000017185   ⟸   ENSPPAT00000039885
RefSeq Acc Id: XP_054951388   ⟸   XM_055095413
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063449435   ⟸   XM_063593365
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063449436   ⟸   XM_063593366
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063449431   ⟸   XM_063593361
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AND2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063449432   ⟸   XM_063593362
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AND2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063449433   ⟸   XM_063593363
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AND2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063449434   ⟸   XM_063593364
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AND2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031668 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039885.1 UniProtKB/TrEMBL
  ENSPPAT00000039887.1 UniProtKB/TrEMBL
InterPro TBORCS5 UniProtKB/TrEMBL
KEGG Report pps:100991686 UniProtKB/TrEMBL
NCBI Gene BORCS5 ENTREZGENE
PANTHER BLOC-1-RELATED COMPLEX SUBUNIT 5 UniProtKB/TrEMBL
  PTHR31634 UniProtKB/TrEMBL
Pfam LOH1CR12 UniProtKB/TrEMBL
UniProt A0A2R9AIJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AND2 ENTREZGENE, UniProtKB/TrEMBL