Borcs5 (BLOC-1 related complex subunit 5) - Rat Genome Database

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Gene: Borcs5 (BLOC-1 related complex subunit 5) Mus musculus
Analyze
Symbol: Borcs5
Name: BLOC-1 related complex subunit 5
RGD ID: 1316928
MGI Page MGI
Description: Acts upstream of or within nervous system development and organelle transport along microtubule. Is active in axon and lysosome. Is expressed in brain; heart; lung; and metanephros. Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Orthologous to human BORCS5 (BLOC-1 related complex subunit 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5830457J20Rik; AW124643; BLOC-1-related complex subunit 5; Loh12; Loh12cr1; loss of heterozygosity 12 chromosomal region 1 protein homolog; loss of heterozygosity, 12, chromosomal region 1 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396134,616,475 - 134,688,147 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6134,616,473 - 134,688,150 (+)EnsemblGRCm39 Ensembl
GRCm386134,639,512 - 134,711,184 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6134,639,510 - 134,711,187 (+)EnsemblGRCm38mm10GRCm38
MGSCv376134,589,530 - 134,661,202 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366134,606,674 - 134,676,863 (+)NCBIMGSCv36mm8
Celera6137,587,872 - 137,663,447 (+)NCBICelera
Cytogenetic Map6G1NCBI
cM Map665.77NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Impact of Genetic Variation in MicroRNA-binding Site on Susceptibility to Colorectal Cancer. Kang BW, etal., Anticancer Res. 2016 Jul;36(7):3353-61.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16944949   PMID:17015433  
PMID:18799693   PMID:21873635   PMID:25898167   PMID:31314175   PMID:32325033   PMID:32553155   PMID:32554809   PMID:34474245   PMID:38355793  


Genomics

Comparative Map Data
Borcs5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396134,616,475 - 134,688,147 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6134,616,473 - 134,688,150 (+)EnsemblGRCm39 Ensembl
GRCm386134,639,512 - 134,711,184 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6134,639,510 - 134,711,187 (+)EnsemblGRCm38mm10GRCm38
MGSCv376134,589,530 - 134,661,202 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366134,606,674 - 134,676,863 (+)NCBIMGSCv36mm8
Celera6137,587,872 - 137,663,447 (+)NCBICelera
Cytogenetic Map6G1NCBI
cM Map665.77NCBI
BORCS5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,357,078 - 12,471,233 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,357,078 - 12,471,233 (+)EnsemblGRCh38hg38GRCh38
GRCh371212,510,012 - 12,624,167 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361212,401,322 - 12,511,105 (+)NCBINCBI36Build 36hg18NCBI36
Build 341212,401,321 - 12,511,105NCBI
Celera1217,653,635 - 17,763,988 (+)NCBICelera
Cytogenetic Map12p13.2NCBI
HuRef1212,275,116 - 12,385,078 (+)NCBIHuRef
CHM1_11212,475,001 - 12,584,853 (+)NCBICHM1_1
T2T-CHM13v2.01212,226,205 - 12,340,409 (+)NCBIT2T-CHM13v2.0
Borcs5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84169,190,025 - 169,272,335 (+)NCBIGRCr8
mRatBN7.24167,458,640 - 167,543,556 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4167,473,177 - 167,540,993 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4173,766,789 - 173,834,399 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04169,549,869 - 169,617,480 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04168,175,487 - 168,241,125 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,396,034 - 168,466,968 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,396,775 - 168,464,352 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04232,664,705 - 232,748,296 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44171,545,892 - 171,614,610 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14171,790,759 - 171,858,467 (+)NCBI
Celera4156,072,931 - 156,138,582 (+)NCBICelera
Cytogenetic Map4q43NCBI
Borcs5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554139,309,861 - 9,399,378 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554139,309,766 - 9,399,378 (+)NCBIChiLan1.0ChiLan1.0
BORCS5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21017,823,289 - 17,950,691 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11217,820,048 - 17,950,110 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,380,071 - 12,488,735 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11212,749,085 - 12,857,043 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1212,749,104 - 12,857,043 (+)Ensemblpanpan1.1panPan2
BORCS5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12733,839,345 - 33,949,056 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2733,837,318 - 33,934,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2712,496,789 - 12,606,369 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02734,146,425 - 34,256,421 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2734,144,391 - 34,242,102 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12734,039,090 - 34,148,751 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02733,988,879 - 34,098,859 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02712,228,438 - 12,340,603 (+)NCBIUU_Cfam_GSD_1.0
Borcs5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494595,078,900 - 95,178,702 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365874,806,113 - 4,906,411 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365874,806,537 - 4,906,301 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BORCS5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl559,970,260 - 60,072,942 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1559,969,806 - 60,072,976 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BORCS5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,259,080 - 12,363,576 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1112,259,495 - 12,364,740 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606922,956,199 - 23,063,114 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Borcs5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475225,382,796 - 25,504,989 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475225,418,206 - 25,504,658 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:745
Count of miRNA genes:269
Interacting mature miRNAs:312
Transcripts:ENSMUST00000062755, ENSMUST00000166591
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129330484149588044Mouse
14746990Manh61_mmandible shape 61 (mouse)6130156355149588044Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128601582149588044Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130156355149588044Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
4141151Ath38_matherosclerosis 38 (mouse)Not determined128495857136293176Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129330484149588044Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129534979149588044Mouse
12879916Shm5_msperm head morphology 5 (mouse)6132266532145601739Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128601582149588044Mouse
10412215Cmv3_mcytomegalovirus resistance 3 (mouse)Not determined6128811857137416927Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129330484149588044Mouse
12910121Lvic3_mliver iron content 3 (mouse)6134096413136022150Mouse
1301820Mop1_mmorphine preference 1 (mouse)Not determined6132578005146330736Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128601582149588044Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6129953954149588044Mouse
10412134Cmv4_mcytomegalovirus resistance 4 (mouse)Not determined6127815180136022150Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
AW124643  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386134,710,376 - 134,710,463UniSTSGRCm38
MGSCv376134,660,394 - 134,660,481UniSTSGRCm37
Celera6137,662,654 - 137,662,741UniSTS
Cytogenetic Map6G1UniSTS
Whitehead/MRC_RH61561.67UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000062755   ⟹   ENSMUSP00000054913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6134,617,903 - 134,688,150 (+)Ensembl
GRCm38.p6 Ensembl6134,640,940 - 134,711,187 (+)Ensembl
Ensembl Acc Id: ENSMUST00000166591   ⟹   ENSMUSP00000127413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6134,616,473 - 134,687,318 (+)Ensembl
GRCm38.p6 Ensembl6134,639,510 - 134,710,355 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6134,617,924 - 134,621,677 (+)Ensembl
GRCm38.p6 Ensembl6134,640,961 - 134,644,714 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6134,618,218 - 134,663,264 (+)Ensembl
GRCm38.p6 Ensembl6134,641,255 - 134,686,301 (+)Ensembl
Ensembl Acc Id: ENSMUST00000204133
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6134,678,513 - 134,687,418 (+)Ensembl
GRCm38.p6 Ensembl6134,701,550 - 134,710,455 (+)Ensembl
RefSeq Acc Id: NM_001170479   ⟹   NP_001163950
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396134,616,475 - 134,688,147 (+)NCBI
GRCm386134,639,512 - 134,711,184 (+)ENTREZGENE
MGSCv376134,589,530 - 134,661,202 (+)RGD
Celera6137,587,872 - 137,663,447 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_026371   ⟹   NP_080647
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396134,617,903 - 134,688,147 (+)NCBI
GRCm386134,640,940 - 134,711,184 (+)NCBI
MGSCv376134,589,530 - 134,661,202 (+)RGD
Celera6137,587,872 - 137,663,447 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080647   ⟸   NM_026371
- Peptide Label: isoform 2
- UniProtKB: Q8BJB0 (UniProtKB/Swiss-Prot),   Q9D920 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001163950   ⟸   NM_001170479
- Peptide Label: isoform 1
- UniProtKB: E9Q2W8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000127413   ⟸   ENSMUST00000166591
Ensembl Acc Id: ENSMUSP00000054913   ⟸   ENSMUST00000062755

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D920-F1-model_v2 AlphaFold Q9D920 1-195 view protein structure

Promoters
RGD ID:6839570
Promoter ID:MM_KWN:47978
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   Lung
Transcripts:NM_026371_LOH12CR1,   OTTMUST00000058035
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366134,590,834 - 134,591,334 (+)MPROMDB
RGD ID:6891286
Promoter ID:EPDNEW_M9094
Type:initiation region
Name:Borcs5_1
Description:Mus musculus BLOC-1 related complex subunit 5 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386134,641,035 - 134,641,095EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915024 AgrOrtholog
Ensembl Genes ENSMUSG00000042992 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000062755 ENTREZGENE
  ENSMUST00000062755.10 UniProtKB/Swiss-Prot
  ENSMUST00000166591 ENTREZGENE
  ENSMUST00000166591.8 UniProtKB/TrEMBL
InterPro TBORCS5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67774 UniProtKB/Swiss-Prot
MGD MGI:1915024 ENTREZGENE
NCBI Gene 67774 ENTREZGENE
PANTHER BLOC-1-RELATED COMPLEX SUBUNIT 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31634 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LOH1CR12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Borcs5 PhenoGen
UniProt BORC5_MOUSE UniProtKB/Swiss-Prot
  E9Q2W8 ENTREZGENE, UniProtKB/TrEMBL
  Q8BJB0 ENTREZGENE
  Q9D920 ENTREZGENE
UniProt Secondary Q8BJB0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-09-15 Borcs5  BLOC-1 related complex subunit 5  Loh12cr1  loss of heterozygosity, 12, chromosomal region 1 homolog (human)  Symbol and/or name change 5135510 APPROVED