RBM17 (RNA binding motif protein 17) - Rat Genome Database

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Gene: RBM17 (RNA binding motif protein 17) Pan paniscus
Analyze
Symbol: RBM17
Name: RNA binding motif protein 17
RGD ID: 11818103
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN alternative mRNA splicing, via spliceosome (inferred); mRNA cis splicing, via spliceosome (inferred); mRNA processing (inferred); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); schizophrenia (ortholog); Spinocerebellar Ataxias (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); precatalytic spliceosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: splicing factor 45
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2818,642,158 - 18,670,043 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11018,647,503 - 18,675,366 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0106,129,708 - 6,157,513 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1106,120,488 - 6,140,085 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl106,120,488 - 6,140,085 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBM17Bonobohypoparathyroidism-deafness-renal disease syndrome  ISORGD:13225468554872ClinVar Annotator: match by term: Hypoparathyroidism, deafness, renal disease syndromeClinVarPMID:25741868
RBM17Bonoboschizophrenia  ISORGD:13225468554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106|PMID:30208311
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBM17BonoboSpinocerebellar Ataxias  ISORGD:13225469068941CTD Direct Evidence: marker/mechanismCTDPMID:18337722


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBM17Bonoboalternative mRNA splicing, via spliceosome involved_inIEAUniProtKB:Q96I25|ensembl:ENSP00000369218150520179 EnsemblGO_REF:0000107
RBM17Bonoboalternative mRNA splicing, via spliceosome involved_inIEAPANTHER:PTN000328854|PANTHER:PTN000328855|PANTHER:PTN001410044150520179 TreeGrafterGO_REF:0000118
RBM17BonobomRNA cis splicing, via spliceosome involved_inIEAUniRule:UR001478768150520179 UniProtGO_REF:0000104
RBM17BonobomRNA cis splicing, via spliceosome involved_inIEAInterPro:IPR040052150520179 InterProGO_REF:0000002
RBM17BonobomRNA processing involved_inIEAUniProtKB-KW:KW-0507150520179 UniProtGO_REF:0000043
RBM17BonobomRNA splicing, via spliceosome involved_inIEAPANTHER:PTN000328854|PANTHER:PTN000328855|PANTHER:PTN001410044150520179 TreeGrafterGO_REF:0000118
RBM17BonobomRNA splicing, via spliceosome involved_inIEAUniRule:UR001478768150520179 UniProtGO_REF:0000104
RBM17BonoboRNA splicing involved_inIEAUniProtKB-KW:KW-0508150520179 UniProtGO_REF:0000043

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBM17Bonobonucleoplasm located_inIEAUniRule:UR001478768150520179 UniProtGO_REF:0000104
RBM17Bonobonucleoplasm located_inIEAUniProtKB:Q5W009|UniProtKB:Q96I25|ensembl:ENSP00000369218150520179 EnsemblGO_REF:0000107
RBM17Bonobonucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
RBM17Bonobonucleus located_inIEAUniProtKB:Q8JZX4|ensembl:ENSMUSP00000041831150520179 EnsemblGO_REF:0000107
RBM17Bonobonucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
RBM17Bonoboprecatalytic spliceosome part_ofIEAPANTHER:PTN000328854|PANTHER:PTN000328855|PANTHER:PTN001410044150520179 TreeGrafterGO_REF:0000118
RBM17Bonoboprotein-containing complex part_ofIEAUniProtKB:Q8JZX4|ensembl:ENSMUSP00000041831150520179 EnsemblGO_REF:0000107
RBM17Bonobospliceosomal complex part_ofIEAUniRule:UR001478768150520179 UniProtGO_REF:0000104
RBM17Bonobospliceosomal complex part_ofIEAUniProtKB-KW:KW-0747150520179 UniProtGO_REF:0000043
1 to 9 of 9 rows

Molecular Function
1 to 20 of 22 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBM17Bonobonucleic acid binding enablesIEAInterPro:IPR000467|InterPro:IPR003954|InterPro:IPR035979150520179 InterProGO_REF:0000002
RBM17Bonoboprotein binding enablesISOUniProtKB:Q9BQA59068941 PMID:17577209UniProtPMID:17577209
RBM17Bonoboprotein binding enablesISOUniProtKB:O755339068941 PMID:37219487IntActPMID:37219487
RBM17Bonoboprotein binding enablesISOPR:P542549068941 PMID:18337722MGIPMID:18337722
RBM17Bonoboprotein binding enablesISOUniProtKB:Q156379068941 PMID:26420826IntActPMID:26420826
RBM17Bonoboprotein binding enablesISOUniProtKB:O75533-1|UniProtKB:P26368|UniProtKB:Q156379068941 PMID:17589525IntActPMID:17589525
RBM17Bonoboprotein binding enablesISOUniProtKB:O43143|UniProtKB:P21673|UniProtKB:Q08379|UniProtKB:Q2TAL8|UniProtKB:Q53EZ4|UniProtKB:Q8IZU0|UniProtKB:Q8TD31-3|UniProtKB:Q9BZL4-5|UniProtKB:Q9H0B39068941 PMID:25416956IntActPMID:25416956
RBM17Bonoboprotein binding enablesISOUniProtKB:P21673|UniProtKB:Q083799068941 PMID:21516116IntActPMID:21516116
RBM17Bonoboprotein binding enablesISOUniProtKB:O431439068941 PMID:29021621IntActPMID:29021621
RBM17Bonoboprotein binding enablesISOUniProtKB:O43143|UniProtKB:O75031|UniProtKB:P21673|UniProtKB:Q08379|UniProtKB:Q15637-4|UniProtKB:Q53EZ4|UniProtKB:Q8IYT3|UniProtKB:Q8TD31-3|UniProtKB:Q9BZL49068941 PMID:32296183IntActPMID:32296183
RBM17Bonoboprotein binding enablesISOUniProtKB:Q154289068941 PMID:17332742IntActPMID:17332742
RBM17Bonoboprotein binding enablesISOUniProtKB:P216739068941 PMID:16189514IntActPMID:16189514
RBM17Bonoboprotein binding enablesISOUniProtKB:P21673|UniProtKB:Q08379|UniProtKB:Q2TAL8|UniProtKB:Q53EZ49068941 PMID:31515488IntActPMID:31515488
RBM17Bonoboprotein binding enablesISOUniProtKB:O76024|UniProtKB:P16284|UniProtKB:P27797|UniProtKB:P36957|UniProtKB:Q8TDX79068941 PMID:32814053IntActPMID:32814053
RBM17Bonoboprotein binding enablesISOUniProtKB:O75533|UniProtKB:Q154289068941 PMID:28514442IntActPMID:28514442
RBM17Bonoboprotein binding enablesISOUniProtKB:O15042|UniProtKB:O43143|UniProtKB:O75533|UniProtKB:Q15637|UniProtKB:Q8IWZ89068941 PMID:22365833IntActPMID:22365833
RBM17Bonoboprotein binding enablesISOUniProtKB:O15042|UniProtKB:O43143|UniProtKB:O75533|UniProtKB:Q8IWZ89068941 PMID:35271311IntActPMID:35271311
RBM17Bonoboprotein binding enablesISOUniProtKB:O15042|UniProtKB:O75533|UniProtKB:Q154289068941 PMID:33961781IntActPMID:33961781
RBM17Bonoboprotein binding enablesISOUniProtKB:P542539068941 PMID:18337722IntActPMID:18337722
RBM17BonoboRNA binding enablesIEAInterPro:IPR000504150520179 InterProGO_REF:0000002
1 to 20 of 22 rows

PMID:22301074   PMID:30032202  



RBM17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2818,642,158 - 18,670,043 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11018,647,503 - 18,675,366 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0106,129,708 - 6,157,513 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1106,120,488 - 6,140,085 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl106,120,488 - 6,140,085 (+)Ensemblpanpan1.1panPan2
RBM17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38106,089,034 - 6,117,447 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl106,089,034 - 6,117,457 (+)EnsemblGRCh38hg38GRCh38
GRCh37106,130,997 - 6,159,410 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36106,171,013 - 6,198,849 (+)NCBINCBI36Build 36hg18NCBI36
Build 34106,171,012 - 6,198,845NCBI
Celera106,060,328 - 6,088,794 (+)NCBICelera
Cytogenetic Map10p15.1NCBI
HuRef106,057,262 - 6,085,729 (+)NCBIHuRef
CHM1_1106,131,060 - 6,159,561 (+)NCBICHM1_1
T2T-CHM13v2.0106,089,199 - 6,117,608 (+)NCBIT2T-CHM13v2.0
Rbm17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39211,590,250 - 11,608,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl211,590,248 - 11,608,964 (-)EnsemblGRCm39 Ensembl
GRCm38211,585,439 - 11,603,199 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl211,585,437 - 11,604,153 (-)EnsemblGRCm38mm10GRCm38
MGSCv37211,507,066 - 11,524,826 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36211,503,292 - 11,521,052 (-)NCBIMGSCv36mm8
Celera211,504,598 - 11,522,403 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map28.85NCBI
Rbm17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81771,846,941 - 71,863,834 (+)NCBIGRCr8
mRatBN7.21766,937,140 - 66,954,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1766,937,140 - 66,954,014 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1770,422,794 - 70,439,754 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01774,251,622 - 74,268,582 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01768,294,616 - 68,311,577 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01770,586,345 - 70,603,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1770,586,394 - 70,603,267 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01772,288,967 - 72,305,900 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41778,139,912 - 78,156,805 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11778,150,744 - 78,167,631 (+)NCBI
Celera1766,441,566 - 66,458,459 (+)NCBICelera
Cytogenetic Map17q12.2NCBI
Rbm17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542122,732,757 - 22,746,014 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542122,732,757 - 22,745,926 (+)NCBIChiLan1.0ChiLan1.0
RBM17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1229,828,720 - 29,853,922 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl229,829,210 - 29,853,841 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha226,859,360 - 26,884,558 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0230,209,817 - 30,235,027 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl230,209,024 - 30,234,985 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1227,306,882 - 27,332,090 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0228,142,934 - 28,168,134 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0228,862,842 - 28,888,059 (-)NCBIUU_Cfam_GSD_1.0
Rbm17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934432,292,267 - 32,312,839 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364848,457,462 - 8,478,309 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364848,457,469 - 8,478,030 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1064,885,870 - 64,908,963 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11064,886,433 - 64,909,006 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21070,943,098 - 70,964,954 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.196,213,477 - 6,240,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl96,221,570 - 6,239,678 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605111,517,551 - 11,549,925 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247751,041,348 - 1,071,194 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247751,041,666 - 1,067,195 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_034929901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000041240   ⟹   ENSPPAP00000018508
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl106,120,488 - 6,140,085 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000041260   ⟹   ENSPPAP00000018528
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl106,120,644 - 6,138,813 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000041265   ⟹   ENSPPAP00000018533
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl106,135,864 - 6,138,813 (+)Ensembl
RefSeq Acc Id: XM_034929901   ⟹   XP_034785792
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2818,642,158 - 18,670,043 (+)NCBI
NHGRI_mPanPan11018,647,503 - 18,675,366 (+)NCBI
Mhudiblu_PPA_v0106,129,708 - 6,157,513 (+)NCBI
Protein RefSeqs XP_034785792 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018508.1
  ENSPPAP00000018528.1
  ENSPPAP00000018533.1
RefSeq Acc Id: XP_034785792   ⟸   XM_034929901
- UniProtKB: A0A2R9AMY6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000018528   ⟸   ENSPPAT00000041260
Ensembl Acc Id: ENSPPAP00000018533   ⟸   ENSPPAT00000041265
Ensembl Acc Id: ENSPPAP00000018508   ⟸   ENSPPAT00000041240
G-patch   RNA recognition motif



1 to 25 of 25 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSPPAG00000032347 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041240.1 UniProtKB/TrEMBL
  ENSPPAT00000041260.1 UniProtKB/TrEMBL
  ENSPPAT00000041265.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro G_patch_dom UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM17 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/TrEMBL
  SPF45_RRM UniProtKB/TrEMBL
NCBI Gene RBM17 ENTREZGENE
PANTHER PTHR13288 UniProtKB/TrEMBL
  SPLICING FACTOR 45 UniProtKB/TrEMBL
Pfam G-patch UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PIRSF Splicing_factor_SPF45 UniProtKB/TrEMBL
PROSITE G_PATCH UniProtKB/TrEMBL
SMART G_patch UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A2R9AMY6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AN03_PANPA UniProtKB/TrEMBL
  A0A2R9AN08_PANPA UniProtKB/TrEMBL
1 to 25 of 25 rows