Symbol:
RBM17
Name:
RNA binding motif protein 17
RGD ID:
11818103
Description:
ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN alternative mRNA splicing, via spliceosome (inferred); mRNA cis splicing, via spliceosome (inferred); mRNA processing (inferred); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); schizophrenia (ortholog); Spinocerebellar Ataxias (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); precatalytic spliceosome (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
splicing factor 45
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 8 18,642,158 - 18,670,043 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 10 18,647,503 - 18,675,366 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 10 6,129,708 - 6,157,513 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 10 6,120,488 - 6,140,085 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 10 6,120,488 - 6,140,085 (+) Ensembl panpan1.1 panPan2
JBrowse:
View Region in Genome Browser (JBrowse)
Model
RBM17 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 8 18,642,158 - 18,670,043 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 10 18,647,503 - 18,675,366 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 10 6,129,708 - 6,157,513 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 10 6,120,488 - 6,140,085 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 10 6,120,488 - 6,140,085 (+) Ensembl panpan1.1 panPan2
RBM17 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 10 6,089,034 - 6,117,447 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 10 6,089,034 - 6,117,457 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 10 6,130,997 - 6,159,410 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 10 6,171,013 - 6,198,849 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 10 6,171,012 - 6,198,845 NCBI Celera 10 6,060,328 - 6,088,794 (+) NCBI Celera Cytogenetic Map 10 p15.1 NCBI HuRef 10 6,057,262 - 6,085,729 (+) NCBI HuRef CHM1_1 10 6,131,060 - 6,159,561 (+) NCBI CHM1_1 T2T-CHM13v2.0 10 6,089,199 - 6,117,608 (+) NCBI T2T-CHM13v2.0
Rbm17 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 2 11,590,250 - 11,608,061 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 2 11,590,248 - 11,608,964 (-) Ensembl GRCm39 Ensembl GRCm38 2 11,585,439 - 11,603,199 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 2 11,585,437 - 11,604,153 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 2 11,507,066 - 11,524,826 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 2 11,503,292 - 11,521,052 (-) NCBI MGSCv36 mm8 Celera 2 11,504,598 - 11,522,403 (-) NCBI Celera Cytogenetic Map 2 A1 NCBI cM Map 2 8.85 NCBI
Rbm17 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 17 71,846,941 - 71,863,834 (+) NCBI GRCr8 mRatBN7.2 17 66,937,140 - 66,954,034 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 17 66,937,140 - 66,954,014 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 17 70,422,794 - 70,439,754 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 17 74,251,622 - 74,268,582 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 17 68,294,616 - 68,311,577 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 17 70,586,345 - 70,603,289 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 17 70,586,394 - 70,603,267 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 17 72,288,967 - 72,305,900 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 17 78,139,912 - 78,156,805 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 17 78,150,744 - 78,167,631 (+) NCBI Celera 17 66,441,566 - 66,458,459 (+) NCBI Celera Cytogenetic Map 17 q12.2 NCBI
Rbm17 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955421 22,732,757 - 22,746,014 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955421 22,732,757 - 22,745,926 (+) NCBI ChiLan1.0 ChiLan1.0
RBM17 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 2 29,828,720 - 29,853,922 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 2 29,829,210 - 29,853,841 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 2 26,859,360 - 26,884,558 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 2 30,209,817 - 30,235,027 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 2 30,209,024 - 30,234,985 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 2 27,306,882 - 27,332,090 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 2 28,142,934 - 28,168,134 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 2 28,862,842 - 28,888,059 (-) NCBI UU_Cfam_GSD_1.0
Rbm17 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024409344 32,292,267 - 32,312,839 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936484 8,457,462 - 8,478,309 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936484 8,457,469 - 8,478,030 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
RBM17 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 10 64,885,870 - 64,908,963 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 10 64,886,433 - 64,909,006 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 10 70,943,098 - 70,964,954 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
RBM17 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 9 6,213,477 - 6,240,945 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 9 6,221,570 - 6,239,678 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666051 11,517,551 - 11,549,925 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Rbm17 (Heterocephalus glaber - naked mole-rat)
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSPPAT00000041240 ⟹ ENSPPAP00000018508
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source PanPan1.1 Ensembl 10 6,120,488 - 6,140,085 (+) Ensembl
Ensembl Acc Id:
ENSPPAT00000041260 ⟹ ENSPPAP00000018528
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source PanPan1.1 Ensembl 10 6,120,644 - 6,138,813 (+) Ensembl
Ensembl Acc Id:
ENSPPAT00000041265 ⟹ ENSPPAP00000018533
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source PanPan1.1 Ensembl 10 6,135,864 - 6,138,813 (+) Ensembl
RefSeq Acc Id:
XM_034929901 ⟹ XP_034785792
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 8 18,642,158 - 18,670,043 (+) NCBI NHGRI_mPanPan1 10 18,647,503 - 18,675,366 (+) NCBI Mhudiblu_PPA_v0 10 6,129,708 - 6,157,513 (+) NCBI
RefSeq Acc Id:
XP_034785792 ⟸ XM_034929901
- UniProtKB:
A0A2R9AMY6 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSPPAP00000018528 ⟸ ENSPPAT00000041260
Ensembl Acc Id:
ENSPPAP00000018533 ⟸ ENSPPAT00000041265
Ensembl Acc Id:
ENSPPAP00000018508 ⟸ ENSPPAT00000041240