RBM17 (RNA binding motif protein 17) - Rat Genome Database

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Gene: RBM17 (RNA binding motif protein 17) Chlorocebus sabaeus
Analyze
Symbol: RBM17
Name: RNA binding motif protein 17
RGD ID: 18556852
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN alternative mRNA splicing, via spliceosome (inferred); mRNA cis splicing, via spliceosome (inferred); mRNA processing (inferred); ASSOCIATED WITH genetic disease (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog); schizophrenia (ortholog); FOUND IN protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: splicing factor 45
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.196,213,477 - 6,240,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl96,221,570 - 6,239,678 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605111,517,551 - 11,549,925 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RBM17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.196,213,477 - 6,240,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl96,221,570 - 6,239,678 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605111,517,551 - 11,549,925 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RBM17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38106,089,034 - 6,117,447 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl106,089,034 - 6,117,457 (+)EnsemblGRCh38hg38GRCh38
GRCh37106,130,997 - 6,159,410 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36106,171,013 - 6,198,849 (+)NCBINCBI36Build 36hg18NCBI36
Build 34106,171,012 - 6,198,845NCBI
Celera106,060,328 - 6,088,794 (+)NCBICelera
Cytogenetic Map10p15.1NCBI
HuRef106,057,262 - 6,085,729 (+)NCBIHuRef
CHM1_1106,131,060 - 6,159,561 (+)NCBICHM1_1
T2T-CHM13v2.0106,089,199 - 6,117,608 (+)NCBIT2T-CHM13v2.0
Rbm17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39211,590,250 - 11,608,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl211,590,248 - 11,608,964 (-)EnsemblGRCm39 Ensembl
GRCm38211,585,439 - 11,603,199 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl211,585,437 - 11,604,153 (-)EnsemblGRCm38mm10GRCm38
MGSCv37211,507,066 - 11,524,826 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36211,503,292 - 11,521,052 (-)NCBIMGSCv36mm8
Celera211,504,598 - 11,522,403 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map28.85NCBI
Rbm17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81771,846,941 - 71,863,834 (+)NCBIGRCr8
mRatBN7.21766,937,140 - 66,954,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1766,937,140 - 66,954,014 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1770,422,794 - 70,439,754 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01774,251,622 - 74,268,582 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01768,294,616 - 68,311,577 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01770,586,345 - 70,603,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1770,586,394 - 70,603,267 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01772,288,967 - 72,305,900 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41778,139,912 - 78,156,805 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11778,150,744 - 78,167,631 (+)NCBI
Celera1766,441,566 - 66,458,459 (+)NCBICelera
Cytogenetic Map17q12.2NCBI
Rbm17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542122,732,757 - 22,746,014 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542122,732,757 - 22,745,926 (+)NCBIChiLan1.0ChiLan1.0
RBM17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2818,642,158 - 18,670,043 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11018,647,503 - 18,675,366 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0106,129,708 - 6,157,513 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1106,120,488 - 6,140,085 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl106,120,488 - 6,140,085 (+)Ensemblpanpan1.1panPan2
RBM17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1229,828,720 - 29,853,922 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl229,829,210 - 29,853,841 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha226,859,360 - 26,884,558 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0230,209,817 - 30,235,027 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl230,209,024 - 30,234,985 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1227,306,882 - 27,332,090 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0228,142,934 - 28,168,134 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0228,862,842 - 28,888,059 (-)NCBIUU_Cfam_GSD_1.0
Rbm17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934432,292,267 - 32,312,839 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364848,457,462 - 8,478,309 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364848,457,469 - 8,478,030 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1064,885,870 - 64,908,963 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11064,886,433 - 64,909,006 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21070,943,098 - 70,964,954 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Rbm17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247751,041,348 - 1,071,194 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247751,041,666 - 1,067,195 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 16 60
Low 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000011634   ⟹   ENSCSAP00000009700
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl96,221,570 - 6,239,678 (+)Ensembl
RefSeq Acc Id: XM_008002195   ⟹   XP_008000386
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.196,213,477 - 6,240,945 (+)NCBI
Vero_WHO_p1.0NW_02366605111,517,551 - 11,544,975 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037983321   ⟹   XP_037839249
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605111,517,551 - 11,549,925 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008000386 (Get FASTA)   NCBI Sequence Viewer  
  XP_037839249 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009700
  ENSCSAP00000009700.1
Reference Protein Sequences
RefSeq Acc Id: XP_008000386   ⟸   XM_008002195
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RM61 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000009700   ⟸   ENSCSAT00000011634
RefSeq Acc Id: XP_037839249   ⟸   XM_037983321
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013564 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011634.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro G_patch_dom UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM17 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/TrEMBL
  SPF45_RRM UniProtKB/TrEMBL
KEGG Report csab:103237840 UniProtKB/TrEMBL
NCBI Gene RBM17 ENTREZGENE
PANTHER PTHR13288 UniProtKB/TrEMBL
  SPLICING FACTOR 45 UniProtKB/TrEMBL
Pfam G-patch UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PIRSF Splicing_factor_SPF45 UniProtKB/TrEMBL
PROSITE G_PATCH UniProtKB/TrEMBL
SMART G_patch UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0D9RM61 ENTREZGENE, UniProtKB/TrEMBL