Rbm17 (RNA binding motif protein 17) - Rat Genome Database
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Gene: Rbm17 (RNA binding motif protein 17) Mus musculus
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Symbol: Rbm17
Name: RNA binding motif protein 17
RGD ID: 1322547
MGI Page MGI
Description: Is expressed in brain; ovary; and primary sex cord. Orthologous to human RBM17 (RNA binding motif protein 17); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 1,2-dimethylhydrazine; 4,4'-diaminodiphenylmethane; Aroclor 1254.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 2700027J02Rik; 45 kDa-splicing factor; RNA-binding motif protein 17; splicing factor 45
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18422   Gm5880  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39211,590,250 - 11,608,061 (-)NCBIGRCm39mm39
GRCm39 Ensembl211,590,248 - 11,608,964 (-)Ensembl
GRCm38211,585,439 - 11,603,199 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl211,585,437 - 11,604,153 (-)EnsemblGRCm38mm10GRCm38
MGSCv37211,507,066 - 11,524,826 (-)NCBIGRCm37mm9NCBIm37
MGSCv36211,503,292 - 11,521,052 (-)NCBImm8
Celera211,504,598 - 11,522,403 (-)NCBICelera
Cytogenetic Map2A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:9731529   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14595844   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16033648   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18337722   PMID:18799693   PMID:21510876   PMID:21835928   PMID:21873635   PMID:22083510   PMID:27160897   PMID:28007900  
PMID:30332651  


Genomics

Comparative Map Data
Rbm17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39211,590,250 - 11,608,061 (-)NCBIGRCm39mm39
GRCm39 Ensembl211,590,248 - 11,608,964 (-)Ensembl
GRCm38211,585,439 - 11,603,199 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl211,585,437 - 11,604,153 (-)EnsemblGRCm38mm10GRCm38
MGSCv37211,507,066 - 11,524,826 (-)NCBIGRCm37mm9NCBIm37
MGSCv36211,503,292 - 11,521,052 (-)NCBImm8
Celera211,504,598 - 11,522,403 (-)NCBICelera
Cytogenetic Map2A1NCBI
RBM17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl106,089,034 - 6,117,457 (+)EnsemblGRCh38hg38GRCh38
GRCh38106,089,034 - 6,117,447 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37106,130,997 - 6,159,410 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36106,171,013 - 6,198,849 (+)NCBINCBI36hg18NCBI36
Build 34106,171,012 - 6,198,845NCBI
Celera106,060,328 - 6,088,794 (+)NCBI
Cytogenetic Map10p15.1NCBI
HuRef106,057,262 - 6,085,729 (+)NCBIHuRef
CHM1_1106,131,060 - 6,159,561 (+)NCBICHM1_1
Rbm17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21766,937,140 - 66,954,034 (+)NCBI
Rnor_6.0 Ensembl1770,586,394 - 70,603,267 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01770,586,345 - 70,603,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01772,288,967 - 72,305,900 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41778,139,912 - 78,156,805 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11778,150,744 - 78,167,631 (+)NCBI
Celera1766,441,566 - 66,458,459 (+)NCBICelera
Cytogenetic Map17q12.2NCBI
Rbm17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542122,732,757 - 22,746,014 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542122,732,757 - 22,745,926 (+)NCBIChiLan1.0ChiLan1.0
RBM17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1106,120,488 - 6,140,085 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl106,120,488 - 6,140,085 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0106,129,708 - 6,157,513 (+)NCBIMhudiblu_PPA_v0panPan3
RBM17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl229,829,210 - 29,853,841 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1229,828,720 - 29,853,922 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rbm17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364848,457,469 - 8,478,030 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1064,885,866 - 64,908,964 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11064,886,433 - 64,909,006 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21070,943,098 - 70,964,954 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM17
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.196,213,477 - 6,240,945 (+)NCBI
ChlSab1.1 Ensembl96,221,570 - 6,239,678 (+)Ensembl
Rbm17
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247751,041,666 - 1,067,195 (+)NCBI

Position Markers
Rbm17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A1UniSTS
cM Map2 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121984831Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125319748Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125319748Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126524778Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323390328289138Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388608993591306Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2778910341789249Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2834628442346384Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2841803942418228Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2949443443494563Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2949443443494563Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967188027132630Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:470
Count of miRNA genes:298
Interacting mature miRNAs:321
Transcripts:ENSMUST00000040314, ENSMUST00000125808, ENSMUST00000130766, ENSMUST00000131036, ENSMUST00000150369, ENSMUST00000156469
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000040314   ⟹   ENSMUSP00000041831
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl211,585,437 - 11,603,262 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125808
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl211,585,439 - 11,585,990 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131036
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl211,587,391 - 11,588,981 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150369
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl211,585,441 - 11,587,168 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156469   ⟹   ENSMUSP00000117133
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl211,596,682 - 11,604,153 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195047
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl211,588,915 - 11,590,858 (-)Ensembl
RefSeq Acc Id: NM_152824   ⟹   NP_690037
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39211,590,250 - 11,608,010 (-)NCBI
GRCm38211,585,439 - 11,603,199 (-)NCBI
MGSCv37211,507,066 - 11,524,826 (-)RGD
Celera211,504,598 - 11,522,403 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004940770
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39211,590,250 - 11,608,061 (-)NCBI
Protein Sequences
Protein RefSeqs NP_690037 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC64085 (Get FASTA)   NCBI Sequence Viewer  
  AAH34896 (Get FASTA)   NCBI Sequence Viewer  
  EDL08016 (Get FASTA)   NCBI Sequence Viewer  
  EDL08017 (Get FASTA)   NCBI Sequence Viewer  
  Q8JZX4 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_690037   ⟸   NM_152824
- UniProtKB: Q8JZX4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000041831   ⟸   ENSMUST00000040314
RefSeq Acc Id: ENSMUSP00000117133   ⟸   ENSMUST00000156469
Protein Domains
G-patch   RRM

Promoters
RGD ID:6832280
Promoter ID:MM_KWN:27763
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000026212
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36211,512,046 - 11,512,546 (-)MPROMDB
RGD ID:6832281
Promoter ID:MM_KWN:27764
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000025816,   OTTMUST00000026210
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36211,524,584 - 11,525,084 (-)MPROMDB
RGD ID:6876348
Promoter ID:EPDNEW_M1625
Type:initiation region
Name:Rbm17_1
Description:Mus musculus RNA binding motif protein 17 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38211,603,229 - 11,603,289EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924188 AgrOrtholog
Ensembl Genes ENSMUSG00000037197 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000041831 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000117133 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000040314 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000156469 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
InterPro G_patch_dom UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RBM17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot
  RRM_dom_euk UniProtKB/Swiss-Prot
  SPF45_RRM UniProtKB/Swiss-Prot
KEGG Report mmu:76938 UniProtKB/Swiss-Prot
MGD MGI:1924188 ENTREZGENE
NCBI Gene 76938 ENTREZGENE
PANTHER PTHR13288 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam G-patch UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
PhenoGen Rbm17 PhenoGen
PIRSF Splicing_factor_SPF45 UniProtKB/Swiss-Prot
PROSITE G_PATCH UniProtKB/Swiss-Prot
SMART G_patch UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A2AP40_MOUSE UniProtKB/TrEMBL
  Q8JZX4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2AP41 UniProtKB/Swiss-Prot
  O75939 UniProtKB/Swiss-Prot