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Gene: Rbm17 (RNA binding motif protein 17) Mus musculus

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Symbol:

Rbm17

Name:

RNA binding motif protein 17

RGD ID:

1322547

MGI Page

MGI

Description:

Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Located in nucleus. Part of protein-containing complex. Is expressed in brain; cerebral cortex; hippocampus; ovary; and primary sex cord. Orthologous to human RBM17 (RNA binding motif protein 17).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2700027J02Rik; 45 kDa-splicing factor; RNA-binding motif protein 17; splicing factor 45

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBM17 (RNA binding motif protein 17)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Rbm17 (RNA binding motif protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbm17 (RNA binding motif protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBM17 (RNA binding motif protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBM17 (RNA binding motif protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbm17 (RNA binding motif protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBM17 (RNA binding motif protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBM17 (RNA binding motif protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbm17 (RNA binding motif protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Rbm17 (RNA binding motif protein 17)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RBM17 (RNA binding motif protein 17)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rbm17 (RNA binding motif protein 17)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	rbm-17	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Spf45	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rbm17	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Related Pseudogenes:

Gm18422 Gm5880

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	11,590,250 - 11,608,061 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	11,590,248 - 11,608,964 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	11,585,439 - 11,603,199 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	11,585,437 - 11,604,153 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	11,507,066 - 11,524,826 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	11,503,292 - 11,521,052 (-)	NCBI		MGSCv36	mm8
Celera	2	11,504,598 - 11,522,403 (-)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI
cM Map	2	8.85	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm17	Mouse	hypoparathyroidism-deafness-renal disease syndrome		ISO	RBM17 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hypoparathyroidism more ...	ClinVar	PMID:25741868
Rbm17	Mouse	schizophrenia		ISO	RBM17 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106 and PMID:30208311

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm17	Mouse	Spinocerebellar Ataxias		ISO	RBM17 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:18337722

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm17	Mouse	(+)-schisandrin B	multiple interactions	ISO	Rbm17 (Rattus norvegicus)	6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of RBM17 mRNA]	CTD	PMID:31150632
Rbm17	Mouse	1,2-dimethylhydrazine	multiple interactions	EXP		6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of RBM17 mRNA	CTD	PMID:22206623
Rbm17	Mouse	1-chloro-2,4-dinitrobenzene	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	Dinitrochlorobenzene results in decreased expression of RBM17 mRNA	CTD	PMID:17374397
Rbm17	Mouse	17alpha-ethynylestradiol	affects expression	ISO	Rbm17 (Rattus norvegicus)	6480464	Ethinyl Estradiol affects the expression of RBM17 mRNA	CTD	PMID:26865667
Rbm17	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Rbm17 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin affects the expression of RBM17 mRNA	CTD	PMID:22298810
Rbm17	Mouse	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	RBM17 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of RBM17 mRNA	CTD	PMID:28628672
Rbm17	Mouse	4,4'-diaminodiphenylmethane	increases expression	EXP		6480464	4 and 4'-diaminodiphenylmethane results in increased expression of RBM17 mRNA	CTD	PMID:18648102
Rbm17	Mouse	4-(ethoxymethylene)-2-phenyloxazol-5-one	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	Oxazolone results in decreased expression of RBM17 mRNA	CTD	PMID:17374397
Rbm17	Mouse	antirheumatic drug	increases expression	ISO	RBM17 (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of RBM17 mRNA	CTD	PMID:24449571
Rbm17	Mouse	aristolochic acid A	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of RBM17 mRNA	CTD	PMID:33212167
Rbm17	Mouse	Aroclor 1254	decreases expression	EXP		6480464	Chlorodiphenyl (54% Chlorine) results in decreased expression of RBM17 mRNA	CTD	PMID:23650126
Rbm17	Mouse	arsenous acid	increases expression	ISO	RBM17 (Homo sapiens)	6480464	Arsenic Trioxide results in increased expression of RBM17 mRNA	CTD	PMID:20458559
Rbm17	Mouse	benzo[a]pyrene	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of RBM17 mRNA	CTD	PMID:26238291
Rbm17	Mouse	benzo[a]pyrene	decreases methylation	ISO	RBM17 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of RBM17 3' UTR	CTD	PMID:27901495
Rbm17	Mouse	benzo[a]pyrene	increases methylation	ISO	RBM17 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of RBM17 promoter	CTD	PMID:27901495
Rbm17	Mouse	benzo[a]pyrene diol epoxide I	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	7 more ...	CTD	PMID:26238291
Rbm17	Mouse	bisphenol A	increases expression	ISO	Rbm17 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of RBM17 mRNA	CTD	PMID:25181051 more ...
Rbm17	Mouse	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of RBM17 mRNA	CTD	PMID:33221593
Rbm17	Mouse	bisphenol A	multiple interactions	ISO	RBM17 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of RBM17 mRNA	CTD	PMID:28628672
Rbm17	Mouse	Bisphenol A diglycidyl ether	affects splicing	EXP		6480464	bisphenol A diglycidyl ether affects the splicing of RBM17 mRNA	CTD	PMID:36464114
Rbm17	Mouse	bisphenol AF	affects splicing	EXP		6480464	bisphenol AF affects the splicing of RBM17 mRNA	CTD	PMID:36464114
Rbm17	Mouse	Brodifacoum	decreases expression	ISO	Rbm17 (Rattus norvegicus)	6480464	bromfenacoum results in decreased expression of RBM17 protein	CTD	PMID:28903499
Rbm17	Mouse	cadmium dichloride	increases expression	ISO	Rbm17 (Rattus norvegicus)	6480464	Cadmium Chloride results in increased expression of RBM17 mRNA	CTD	PMID:33453195
Rbm17	Mouse	caffeine	affects phosphorylation	ISO	RBM17 (Homo sapiens)	6480464	Caffeine affects the phosphorylation of RBM17 protein	CTD	PMID:35688186
Rbm17	Mouse	cannabidiol	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	Cannabidiol results in decreased expression of RBM17 protein	CTD	PMID:34122009
Rbm17	Mouse	carboplatin	decreases response to substance	ISO	RBM17 (Homo sapiens)	6480464	RBM17 protein results in decreased susceptibility to Carboplatin	CTD	PMID:16061639
Rbm17	Mouse	chlorpyrifos	decreases expression	EXP		6480464	Chlorpyrifos results in decreased expression of RBM17 mRNA	CTD	PMID:37019170
Rbm17	Mouse	cisplatin	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	Cisplatin results in decreased expression of RBM17 protein	CTD	PMID:20540955
Rbm17	Mouse	coumarin	decreases phosphorylation	ISO	RBM17 (Homo sapiens)	6480464	coumarin results in decreased phosphorylation of RBM17 protein	CTD	PMID:35688186
Rbm17	Mouse	deoxynivalenol	increases phosphorylation	EXP		6480464	deoxynivalenol results in increased phosphorylation of RBM17 protein	CTD	PMID:23352502
Rbm17	Mouse	dexamethasone	multiple interactions	ISO	RBM17 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of RBM17 mRNA	CTD	PMID:28628672
Rbm17	Mouse	diarsenic trioxide	increases expression	ISO	RBM17 (Homo sapiens)	6480464	Arsenic Trioxide results in increased expression of RBM17 mRNA	CTD	PMID:20458559
Rbm17	Mouse	Dibutyl phosphate	affects expression	ISO	RBM17 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of RBM17 mRNA	CTD	PMID:37042841
Rbm17	Mouse	doxorubicin	decreases response to substance	ISO	RBM17 (Homo sapiens)	6480464	RBM17 protein results in decreased susceptibility to Doxorubicin	CTD	PMID:16061639
Rbm17	Mouse	doxorubicin	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of RBM17 mRNA	CTD	PMID:29803840
Rbm17	Mouse	enzyme inhibitor	multiple interactions	ISO	RBM17 (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of RBM17 protein	CTD	PMID:23301498
Rbm17	Mouse	etoposide	decreases response to substance	ISO	RBM17 (Homo sapiens)	6480464	RBM17 protein results in decreased susceptibility to Etoposide	CTD	PMID:16061639
Rbm17	Mouse	fenvalerate	increases expression	ISO	Rbm17 (Rattus norvegicus)	6480464	fenvalerate results in increased expression of RBM17 mRNA	CTD	PMID:30307764
Rbm17	Mouse	flutamide	increases expression	ISO	Rbm17 (Rattus norvegicus)	6480464	Flutamide results in increased expression of RBM17 mRNA	CTD	PMID:24136188
Rbm17	Mouse	folic acid	multiple interactions	EXP		6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of RBM17 mRNA	CTD	PMID:22206623
Rbm17	Mouse	FR900359	increases phosphorylation	ISO	RBM17 (Homo sapiens)	6480464	FR900359 results in increased phosphorylation of RBM17 protein	CTD	PMID:37730182
Rbm17	Mouse	gemcitabine	decreases response to substance	ISO	RBM17 (Homo sapiens)	6480464	RBM17 protein results in decreased susceptibility to Gemcitabine	CTD	PMID:16061639
Rbm17	Mouse	genistein	increases expression	ISO	RBM17 (Homo sapiens)	6480464	Genistein results in increased expression of RBM17 mRNA	CTD	PMID:26865667
Rbm17	Mouse	indometacin	multiple interactions	ISO	RBM17 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of RBM17 mRNA	CTD	PMID:28628672
Rbm17	Mouse	ivermectin	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	Ivermectin results in decreased expression of RBM17 protein	CTD	PMID:32959892
Rbm17	Mouse	lipopolysaccharide	increases expression	ISO	RBM17 (Homo sapiens)	6480464	Lipopolysaccharides results in increased expression of RBM17 mRNA	CTD	PMID:35811015
Rbm17	Mouse	lipopolysaccharide	multiple interactions	ISO	RBM17 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of RBM17 mRNA	CTD	PMID:35811015
Rbm17	Mouse	LY 117018	multiple interactions	ISO	RBM17 (Homo sapiens)	6480464	LY 117018 inhibits the reaction [RBM17 protein results in decreased susceptibility to Mitoxantrone]	CTD	PMID:16061639
Rbm17	Mouse	menadione	affects expression	ISO	RBM17 (Homo sapiens)	6480464	Vitamin K 3 affects the expression of RBM17 mRNA	CTD	PMID:20044591
Rbm17	Mouse	mitoxantrone	multiple interactions	ISO	RBM17 (Homo sapiens)	6480464	LY 117018 inhibits the reaction [RBM17 protein results in decreased susceptibility to Mitoxantrone] and Tamoxifen inhibits the reaction [RBM17 protein results in decreased susceptibility to Mitoxantrone]	CTD	PMID:16061639
Rbm17	Mouse	mitoxantrone	decreases response to substance	ISO	RBM17 (Homo sapiens)	6480464	RBM17 protein results in decreased susceptibility to Mitoxantrone	CTD	PMID:16061639
Rbm17	Mouse	nickel sulfate	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	nickel sulfate results in decreased expression of RBM17 mRNA	CTD	PMID:16780908 and PMID:17374397
Rbm17	Mouse	nitrates	multiple interactions	EXP		6480464	[Particulate Matter results in increased abundance of Nitrates] which results in increased expression of RBM17 mRNA	CTD	PMID:35964746
Rbm17	Mouse	paracetamol	affects expression	EXP		6480464	Acetaminophen affects the expression of RBM17 mRNA	CTD	PMID:17562736
Rbm17	Mouse	pemetrexed	decreases response to substance	ISO	RBM17 (Homo sapiens)	6480464	RBM17 protein results in decreased susceptibility to Pemetrexed	CTD	PMID:16061639
Rbm17	Mouse	phorone	affects expression	ISO	Rbm17 (Rattus norvegicus)	6480464	phorone affects the expression of RBM17 mRNA	CTD	PMID:18198479
Rbm17	Mouse	resveratrol	multiple interactions	ISO	RBM17 (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in increased expression of RBM17 mRNA	CTD	PMID:23557933
Rbm17	Mouse	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	RBM17 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of RBM17 mRNA	CTD	PMID:35811015
Rbm17	Mouse	sodium arsenite	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of RBM17 mRNA	CTD	PMID:38568856
Rbm17	Mouse	tamoxifen	multiple interactions	ISO	RBM17 (Homo sapiens)	6480464	Tamoxifen inhibits the reaction [RBM17 protein results in decreased susceptibility to Mitoxantrone]	CTD	PMID:16061639
Rbm17	Mouse	temozolomide	decreases expression	ISO	RBM17 (Homo sapiens)	6480464	Temozolomide results in decreased expression of RBM17 mRNA	CTD	PMID:31758290
Rbm17	Mouse	tetrachloromethane	increases expression	ISO	Rbm17 (Rattus norvegicus)	6480464	Carbon Tetrachloride results in increased expression of RBM17 mRNA	CTD	PMID:31150632
Rbm17	Mouse	tetrachloromethane	multiple interactions	ISO	Rbm17 (Rattus norvegicus)	6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of RBM17 mRNA]	CTD	PMID:31150632
Rbm17	Mouse	thioacetamide	increases expression	ISO	Rbm17 (Rattus norvegicus)	6480464	Thioacetamide results in increased expression of RBM17 mRNA	CTD	PMID:34492290
Rbm17	Mouse	valproic acid	increases expression	ISO	RBM17 (Homo sapiens)	6480464	Valproic Acid results in increased expression of RBM17 mRNA	CTD	PMID:23179753
Rbm17	Mouse	valproic acid	decreases methylation	ISO	RBM17 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of RBM17 gene	CTD	PMID:29154799
Rbm17	Mouse	vinclozolin	decreases expression	ISO	Rbm17 (Rattus norvegicus)	6480464	vinclozolin results in decreased expression of RBM17 mRNA	CTD	PMID:23555832
Rbm17	Mouse	vincristine	decreases response to substance	ISO	RBM17 (Homo sapiens)	6480464	RBM17 protein results in decreased susceptibility to Vincristine	CTD	PMID:16061639
Rbm17	Mouse	vinorelbine	decreases response to substance	ISO	RBM17 (Homo sapiens)	6480464	RBM17 protein results in decreased susceptibility to vinorelbine	CTD	PMID:16061639

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm17	Mouse	alternative mRNA splicing, via spliceosome	involved_in	ISS	UniProtKB:Q96I25	2290270		UniProt	GO_REF:0000024
Rbm17	Mouse	alternative mRNA splicing, via spliceosome	involved_in	ISO	UniProtKB:Q96I25	2290270		GO_Central	GO_REF:0000119
Rbm17	Mouse	alternative mRNA splicing, via spliceosome	involved_in	IBA	PANTHER:PTN000998924 and UniProtKB:Q96I25	2290270		GO_Central	GO_REF:0000033
Rbm17	Mouse	mRNA cis splicing, via spliceosome	involved_in	IEA	InterPro:IPR040052	2290270		InterPro	GO_REF:0000002
Rbm17	Mouse	RNA splicing, via transesterification reactions	involved_in	TAS		2290270	PMID:9731529	UniProt	PMID:9731529

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm17	Mouse	nucleoplasm	located_in	ISO	UniProtKB:Q96I25	2290270		GO_Central	GO_REF:0000119
Rbm17	Mouse	nucleoplasm	located_in	IEA	UniProtKB:Q5W009 more ...	2290270		Ensembl	GO_REF:0000107
Rbm17	Mouse	nucleus	located_in	IDA		2290270	PMID:18337722	MGI	PMID:18337722
Rbm17	Mouse	protein-containing complex	part_of	IDA		2290270	PMID:18337722	MGI	PMID:18337722
Rbm17	Mouse	spliceosomal complex	part_of	IEA	UniProtKB-KW:KW-0747	2290270		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm17	Mouse	protein binding	enables	IPI	PR:P54254	2290270	PMID:18337722	MGI	PMID:18337722
Rbm17	Mouse	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	2290270		UniProt	GO_REF:0000043

Imported Annotations - KEGG (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbm17	Mouse	spliceosome pathway		IEA		6907045		KEGG	mmu:03040

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:9731529	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:12477932	PMID:12904583	PMID:14595844	PMID:14610273	PMID:15489334	PMID:15782199
PMID:16033648	PMID:16141072	PMID:16141073	PMID:17967808	PMID:18337722	PMID:18799693	PMID:21510876	PMID:21835928	PMID:21873635	PMID:22083510	PMID:27160897	PMID:28007900
PMID:30332651	PMID:32554809	PMID:36417873

Rbm17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	11,590,250 - 11,608,061 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	11,590,248 - 11,608,964 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	11,585,439 - 11,603,199 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	11,585,437 - 11,604,153 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	11,507,066 - 11,524,826 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	11,503,292 - 11,521,052 (-)	NCBI		MGSCv36	mm8
Celera	2	11,504,598 - 11,522,403 (-)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI
cM Map	2	8.85	NCBI

RBM17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	6,089,034 - 6,117,447 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	6,089,034 - 6,117,457 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	6,130,997 - 6,159,410 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	6,171,013 - 6,198,849 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	6,171,012 - 6,198,845	NCBI
Celera	10	6,060,328 - 6,088,794 (+)	NCBI		Celera
Cytogenetic Map	10	p15.1	NCBI
HuRef	10	6,057,262 - 6,085,729 (+)	NCBI		HuRef
CHM1_1	10	6,131,060 - 6,159,561 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	6,089,199 - 6,117,608 (+)	NCBI		T2T-CHM13v2.0

Rbm17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	71,846,941 - 71,863,834 (+)	NCBI		GRCr8
mRatBN7.2	17	66,937,140 - 66,954,034 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	66,937,140 - 66,954,014 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	70,422,794 - 70,439,754 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	74,251,622 - 74,268,582 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	68,294,616 - 68,311,577 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	70,586,345 - 70,603,289 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	70,586,394 - 70,603,267 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	72,288,967 - 72,305,900 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	78,139,912 - 78,156,805 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	78,150,744 - 78,167,631 (+)	NCBI
Celera	17	66,441,566 - 66,458,459 (+)	NCBI		Celera
Cytogenetic Map	17	q12.2	NCBI

Rbm17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	22,732,757 - 22,746,014 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955421	22,732,757 - 22,745,926 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBM17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	18,642,158 - 18,670,043 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	18,647,503 - 18,675,366 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	6,129,708 - 6,157,513 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	6,120,488 - 6,140,085 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	6,120,488 - 6,140,085 (+)	Ensembl	panpan1.1		panPan2

RBM17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	29,828,720 - 29,853,922 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	29,829,210 - 29,853,841 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	26,859,360 - 26,884,558 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	30,209,817 - 30,235,027 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	30,209,024 - 30,234,985 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	27,306,882 - 27,332,090 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	28,142,934 - 28,168,134 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	28,862,842 - 28,888,059 (-)	NCBI		UU_Cfam_GSD_1.0

Rbm17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	32,292,267 - 32,312,839 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	8,457,462 - 8,478,309 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	8,457,469 - 8,478,030 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	64,885,870 - 64,908,963 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	64,886,433 - 64,909,006 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	70,943,098 - 70,964,954 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	6,213,477 - 6,240,945 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	6,221,570 - 6,239,678 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	11,517,551 - 11,549,925 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	1,041,348 - 1,071,194 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624775	1,041,666 - 1,067,195 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Rbm17
933 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	470
Count of miRNA genes:	298
Interacting mature miRNAs:	321
Transcripts:	ENSMUST00000040314, ENSMUST00000125808, ENSMUST00000130766, ENSMUST00000131036, ENSMUST00000150369, ENSMUST00000156469
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142333	Tgq10_m	triglyceride QTL 10 (mouse)			Not determined			1	25324559	Mouse
4141836	Tgq11_m	triglyceride QTL 11 (mouse)			Not determined			1	25324559	Mouse
12904743	Carcdq3_m	cardiac collagen deposition QTL 3 (mouse)					2	3234940	28179150	Mouse
1300624	Insq7_m	insulin QTL 7 (mouse)			Not determined		2	9384446	43384575	Mouse
10045633	Heal15_m	wound healing/regeneration 15 (mouse)			Not determined		2	1	21989642	Mouse
1301769	Orgwq2_m	organ weight QTL 2 (mouse)			Not determined		2	3887126	93421651	Mouse
1301838	Sluc16_m	susceptibility to lung cancer 16 (mouse)			Not determined		2	1	26529589	Mouse
1301790	Pcfm1_m	periosteal circumference and femur length 1 (mouse)			Not determined		2	8236296	42236396	Mouse
10043876	Adip22_m	adiposity 22 (mouse)			Not determined		2	8308051	42308240	Mouse
10755513	Amzn4_m	anatomical modifier of Zfp423 4 (mouse)					2	9384446	43384575	Mouse
12903993	Opfaq1_m	open field activity QTL 1 (mouse)					2	9676691	27022642	Mouse
1301980	Fcsa5_m	femoral cross-sectional area 5 (mouse)			Not determined		2	7679115	41679261	Mouse

Rbm17

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	2	A1	UniSTS
cM Map	2		UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001418858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001418859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_152824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004940770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF083384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK180353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL831794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC034896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000040314 ⟹ ENSMUSP00000041831

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	11,590,248 - 11,608,073 (-)	Ensembl
GRCm38.p6 Ensembl	2	11,585,437 - 11,603,262 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000125808

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	11,590,250 - 11,590,801 (-)	Ensembl
GRCm38.p6 Ensembl	2	11,585,439 - 11,585,990 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000131036

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	11,592,202 - 11,593,792 (-)	Ensembl
GRCm38.p6 Ensembl	2	11,587,391 - 11,588,981 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000150369

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	11,590,252 - 11,591,979 (-)	Ensembl
GRCm38.p6 Ensembl	2	11,585,441 - 11,587,168 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000156469 ⟹ ENSMUSP00000117133

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	11,601,493 - 11,608,964 (-)	Ensembl
GRCm38.p6 Ensembl	2	11,596,682 - 11,604,153 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000195047

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	11,593,726 - 11,595,669 (-)	Ensembl
GRCm38.p6 Ensembl	2	11,588,915 - 11,590,858 (-)	Ensembl

RefSeq Acc Id:

NM_001418858 ⟹ NP_001405787

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	11,590,604 - 11,608,045 (-)	NCBI

RefSeq Acc Id:

NM_001418859 ⟹ NP_001405788

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	11,596,134 - 11,608,045 (-)	NCBI

RefSeq Acc Id:

NM_152824 ⟹ NP_690037

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	11,590,250 - 11,608,045 (-)	NCBI
GRCm38	2	11,585,439 - 11,603,199 (-)	NCBI
MGSCv37	2	11,507,066 - 11,524,826 (-)	RGD
Celera	2	11,504,598 - 11,522,403 (-)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

CGTGGAGGCTCGGCGCTGCGGCGGACTCCGGCGGTGGGCGGGCTTCCGCGCAGGGCGGCCGGGCTCCGCGCTGCCGCCGCCGTGGCCCATGGGCACAATCGTCTCGGAAGGCCGGCATTAAACCAAAA
AGATGTCCCTATATGATGACCTGGGAGTGGAGACCAGTGACTCAAAAACTGAAGGCTGGTCCAAAAACTTCAAGCTCCTGCAGTCCCAGCTCCAGGTGAAGAAGGCGGCGCTCACTCAGGCCAAGAGC
CAAAGGACCAAGCAAAGTACAGTGCTTGCTCCGGTCATCGACCTAAAGCGAGGCGGCTCCTCAGATGACCGGCAGATTGCAGACACACCACCTCACGTGGCAGCTGGGCTGAAGGACCCTGTGCCCAG
TGGGTTTTCTGCAGGGGAAGTTCTGATCCCCTTAGCTGATGAATATGACCCTATGTTCCCCAATGACTATGAGAAAGTGGTGAAGCGCCAGAGAGAAGAGCGGCAGAGGCAGCGGGAGCTGGAAAGAC
AGAAGGAAATAGAGGAAAGAGAAAAGAGGCGTAAAGACAGACACGAAGCCAGTGGGTTTTCAAGACGACCAGACCCTGATTCTGATGAGGATGAAGATTATGAGCGAGAGCGGAGGAAAAGAAGTATG
GGAGGAGCTGCCATCGCCCCACCGACGTCTCTTGTAGAGAAAGACAAAGAGTTACCCCGCGATTTTCCTTATGAAGAGGACTCAAGACCGAGATCACAGTCTTCCAAAGCTGCTATTCCTCCCCCCGT
GTATGAGGAGCCGGACAGACCAAGATCTCCAACAGGCCCCAGCAACTCCTTCCTTGCTAACATGGGTGGCACAGTGGCTCATAAGATTATGCAGAAGTATGGCTTCCGGGAAGGTCAGGGACTGGGGA
AACACGAGCAAGGGCTGAGTACTGCATTGTCTGTGGAGAAGACCAGCAAGCGTGGCGGCAAGATCATTGTGGGGGATGCGACAGAGAAGGGCGAGGCTCAGGATGCATCCAAGAAGTCGGATTCAAAT
CCATTAACTGAAATTCTTAAGTGCCCTACTAAAGTGGTCTTGCTGAGGAACATGGTTGGTGCAGGAGAGGTCGATGAAGACTTGGAAGTTGAAACCAAGGAAGAATGTGAAAAATATGGCAAAGTTGG
GAAATGTGTGATATTTGAGATTCCTGGTGCCCCTGATGATGAAGCAGTACGGATATTTTTAGAATTTGAGAGAGTCGAATCAGCAATTAAAGCTGTGGTGGATCTGAATGGGAGGTATTTTGGTGGAC
GGGTGGTAAAAGCATGTTTCTACAATTTGGATAAATTCAGGGTCTTGGATCTAGCAGAGCAAGTTTGATTGTAACTTAAAGTCACCTCCTTGATCCTTACATGAGCTACAGACTGAACAATGACACAG
GCATGGCTGTTGTGTCCATGGCTGGTGGACACTGAAACTCTTGGATGGACTTCTAAAATATATGTTGATGGATCCCTTTTTTATTTTGTGTTTTTTTTAATATAGTATAAAAATCCTTTAAAAATCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XR_004940770

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	11,590,250 - 11,608,061 (-)	NCBI

Sequence:

show sequence

CCCGGCAGCCTCCGCTCTCTTACCCCGCGCGGTGCATCCCTTTGCGGACTCCGTGGAGGCTCGG
CGCTGCGGCGGACTCCGGCGGTGGGCGGGCTTCCGCGCAGGGCGGCCGGGCTCCGCGCTGCCGCCGCCGTGGCCCATGGGCACAATCGTCTCGGAAGGCCGGCATTAAACCAAAAAGATGTCCCTATA
TGATGACCTGGGAGTGGAGACCAGTGACTCAAAAACTGAAGGCTGGTCCAAAAACTTCAAGCTCCTGCAGTCCCAGCTCCAGGTGAAGAAGGCGGCGCTCACTCAGGCCAAGAGCCAAAGGACCAAGC
AAAGTACAGTGCTTGCTCCGGTCATCGACCTAAAGCGAGGCGGCTCCTCAGATGACCGGCAGATTGCAGACACACCACCTCACGTGGCAGCTGGGCTGAAGGACCCTGTGCCCAGTGGGTTTTCTGCA
GGGGAAGTTCTGATCCCCTTAGCTGATGAATATGACCCTATGTTCCCCAATGACTATGAGAAAGTGGTGAAGCGCCAGAGAGAAGAGCGGCAGAGGCAGCGGGAGCTGGAAAGACAGAAGGAAATAGA
GGAAAGAGAAAAGAGGCGTAAAGACAGACACGAAGCCAGTGGGTTTTCAAGACGACCAGACCCTGATTCTGATGAGGATGAAGATTATGAGCGAGAGCGGAGGAAAAGAAGTATGGGAGGAGCTGCCA
TCGCCCCACCGACGTCTCTTGTAGAGAAAGACAAAGAGTTACCCCGCGATTTTCCTTATGAAGAGGACTCAAGACCGAGATCACAGTCTTCCAAAGCTGCTATTCCTCCCCCCGTGTATGAGGAGCCG
GACAGACCAAGATCTCCAACAGGCCCCAGCAACTCCTTCCTTGCTAACATGGGTGGCACAGTGGCTCATAAGATTATGCAGAAGTATGGCTTCCGGGAAGGTCAGGGACTGGGGAAACACGAGCAAGG
GCTGAGTACTGCATTGTCTGTGGAGAAGACCAGCAAGCGTGGCGGCAAGATCATTGTGGGGGATGCGACAGAGAAGGGCGAGGCTCAGGAACATGGTTGGTGCAGGAGAGGTCGATGAAGACTTGGAA
GTTGAAACCAAGGAAGAATGTGAAAAATATGGCAAAGTTGGGAAATGTGTGATATTTGAGATTCCTGGTGCCCCTGATGATGAAGCAGTACGGATATTTTTAGAATTTGAGAGAGTCGAATCAGCAAT
TAAAGCTGTGGTGGATCTGAATGGGAGGTATTTTGGTGGACGGGTGGTAAAAGCATGTTTCTACAATTTGGATAAATTCAGGGTCTTGGATCTAGCAGAGCAAGTTTGATTGTAACTTAAAGTCACCT
CCTTGATCCTTACATGAGCTACAGACTGAACAATGACACAGGCATGGCTGTTGTGTCCATGGCTGGTGGACACTGAAACTCTTGGATGGACTTCTAAAATATATGTTGATGGATCCCTTTTTTATTTT
GTGTTTTTTTTAATATAGTATAAAAATCCTTTAAAAATC

hide sequence


Protein RefSeqs	NP_001405787	(Get FASTA)	NCBI Sequence Viewer
	NP_001405788	(Get FASTA)	NCBI Sequence Viewer
	NP_690037	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC64085	(Get FASTA)	NCBI Sequence Viewer
	AAH34896	(Get FASTA)	NCBI Sequence Viewer
	EDL08016	(Get FASTA)	NCBI Sequence Viewer
	EDL08017	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000041831
	ENSMUSP00000041831.6
GenBank Protein	Q8JZX4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_690037 ⟸ NM_152824
- Peptide Label:	isoform 1
- UniProtKB:	A2AP41 (UniProtKB/Swiss-Prot), O75939 (UniProtKB/Swiss-Prot), Q8JZX4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRGGSSDDRQIADTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQRQRELERQ KEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSFLANMGGTVAHKIMQKYGFREGQGLGK HEQGLSTALSVEKTSKRGGKIIVGDATEKGEAQDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR VVKACFYNLDKFRVLDLAEQV hide sequence

Ensembl Acc Id:

ENSMUSP00000041831 ⟸ ENSMUST00000040314

Ensembl Acc Id:

ENSMUSP00000117133 ⟸ ENSMUST00000156469

RefSeq Acc Id:	NP_001405787 ⟸ NM_001418858
- Peptide Label:	isoform 2

RefSeq Acc Id:	NP_001405788 ⟸ NM_001418859
- Peptide Label:	isoform 3

Protein Domains

G-patch RRM

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8JZX4-F1-model_v2	AlphaFold	Q8JZX4	1-405	view protein structure

RGD ID:

6832280

Promoter ID:

MM_KWN:27763

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Kidney

Transcripts:

OTTMUST00000026212

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	11,512,046 - 11,512,546 (-)	MPROMDB

RGD ID:

6832281

Promoter ID:

MM_KWN:27764

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000025816, OTTMUST00000026210

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	11,524,584 - 11,525,084 (-)	MPROMDB

RGD ID:

6876348

Promoter ID:

EPDNEW_M1625

Type:

initiation region

Name:

Rbm17_1

Description:

Mus musculus RNA binding motif protein 17 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	11,603,229 - 11,603,289	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000037197	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000040314	ENTREZGENE
	ENSMUST00000040314.12	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
InterPro	G_patch_dom	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RBM17	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
	RRM_dom_euk	UniProtKB/Swiss-Prot
	SPF45_RRM	UniProtKB/Swiss-Prot
KEGG Report	mmu:76938	UniProtKB/Swiss-Prot
MGD	MGI:1924188	ENTREZGENE
NCBI Gene	76938	ENTREZGENE
PANTHER	PTHR13288	UniProtKB/Swiss-Prot
	SPLICING FACTOR 45	UniProtKB/Swiss-Prot
Pfam	G-patch	UniProtKB/Swiss-Prot
	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Rbm17	PhenoGen
PIRSF	Splicing_factor_SPF45	UniProtKB/Swiss-Prot
PROSITE	G_PATCH	UniProtKB/Swiss-Prot
SMART	G_patch	UniProtKB/Swiss-Prot
	RRM_1	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	A2AP40_MOUSE	UniProtKB/TrEMBL
	A2AP41	ENTREZGENE
	O75939	ENTREZGENE
	Q8JZX4	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	A2AP41	UniProtKB/Swiss-Prot
	O75939	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

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