ERLIN1 (ER lipid raft associated 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ERLIN1 (ER lipid raft associated 1) Pan paniscus
Analyze
Symbol: ERLIN1
Name: ER lipid raft associated 1
RGD ID: 11789665
Description: ENCODES a protein that exhibits cholesterol binding (inferred); lipid binding (inferred); ubiquitin protein ligase binding (inferred); INVOLVED IN cholesterol metabolic process (inferred); ERAD pathway (inferred); lipid metabolic process (inferred); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: erlin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,039,719 - 112,075,365 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,045,038 - 112,080,263 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01096,756,261 - 96,791,925 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110100,238,320 - 100,273,971 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10100,238,320 - 100,273,942 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ERLIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,039,719 - 112,075,365 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,045,038 - 112,080,263 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01096,756,261 - 96,791,925 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110100,238,320 - 100,273,971 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10100,238,320 - 100,273,942 (-)Ensemblpanpan1.1panPan2
ERLIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810100,150,094 - 100,186,029 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10100,150,094 - 100,186,033 (-)EnsemblGRCh38hg38GRCh38
GRCh3710101,909,851 - 101,945,786 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610101,899,837 - 101,935,804 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410101,899,841 - 101,935,393NCBI
Celera1095,647,790 - 95,683,757 (-)NCBICelera
Cytogenetic Map10q24.31NCBI
HuRef1095,538,784 - 95,574,746 (-)NCBIHuRef
CHM1_110102,194,537 - 102,230,501 (-)NCBICHM1_1
T2T-CHM13v2.010101,034,336 - 101,070,271 (-)NCBIT2T-CHM13v2.0
Erlin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391944,023,382 - 44,058,580 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1944,023,383 - 44,058,224 (-)EnsemblGRCm39 Ensembl
GRCm381944,034,943 - 44,070,164 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1944,034,944 - 44,069,785 (-)EnsemblGRCm38mm10GRCm38
MGSCv371944,109,433 - 44,144,275 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361944,088,258 - 44,122,836 (-)NCBIMGSCv36mm8
Celera1944,820,444 - 44,855,267 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1936.7NCBI
Erlin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81252,870,356 - 252,905,681 (-)NCBIGRCr8
mRatBN7.21242,921,147 - 242,956,472 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,921,152 - 242,956,394 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1251,071,489 - 251,106,785 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01257,768,244 - 257,803,553 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01250,421,641 - 250,456,935 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01263,810,439 - 263,845,762 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1263,810,439 - 263,845,762 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01271,255,433 - 271,290,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41249,161,437 - 249,196,760 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11249,420,178 - 249,453,615 (+)NCBI
Celera1238,738,636 - 238,773,959 (-)NCBICelera
Cytogenetic Map1q54NCBI
Erlin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555076,028,324 - 6,063,689 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555076,029,247 - 6,062,946 (-)NCBIChiLan1.0ChiLan1.0
ERLIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12812,924,942 - 12,962,016 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2812,927,018 - 12,961,983 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2813,108,086 - 13,145,157 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02813,393,298 - 13,430,578 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2813,393,304 - 13,430,564 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12812,940,139 - 12,977,413 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02812,978,226 - 13,015,269 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02813,112,507 - 13,149,560 (-)NCBIUU_Cfam_GSD_1.0
Erlin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721334,041,433 - 34,076,926 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493663680,564 - 116,694 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493663680,583 - 116,027 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERLIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1993,181,320 - 93,217,967 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl993,181,319 - 93,217,034 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604854,182,581 - 54,218,350 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erlin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473711,977,397 - 12,018,438 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473711,977,397 - 12,018,437 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000047680   ⟹   ENSPPAP00000024854
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10100,238,320 - 100,273,942 (-)Ensembl
RefSeq Acc Id: XM_003825464   ⟹   XP_003825512
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28112,039,719 - 112,075,365 (-)NCBI
NHGRI_mPanPan110112,045,038 - 112,080,263 (-)NCBI
Mhudiblu_PPA_v01096,756,261 - 96,791,925 (-)NCBI
PanPan1.110100,238,320 - 100,273,971 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063607853   ⟹   XP_063463923
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28112,039,719 - 112,075,334 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003825512 (Get FASTA)   NCBI Sequence Viewer  
  XP_063463923 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024854.1
Reference Protein Sequences
RefSeq Acc Id: XP_003825512   ⟸   XM_003825464
- UniProtKB: A0A2R9BCK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000024854   ⟸   ENSPPAT00000047680
RefSeq Acc Id: XP_063463923   ⟸   XM_063607853
Protein Domains
Band


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035564 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047680.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.479.30 UniProtKB/TrEMBL
InterPro Band_7 UniProtKB/TrEMBL
  Band_7/SPFH_dom_sf UniProtKB/TrEMBL
  Erlin1/2 UniProtKB/TrEMBL
KEGG Report pps:100995579 UniProtKB/TrEMBL
NCBI Gene ERLIN1 ENTREZGENE
PANTHER ERLIN-1 UniProtKB/TrEMBL
  PTHR15351 UniProtKB/TrEMBL
Pfam Band_7 UniProtKB/TrEMBL
SMART PHB UniProtKB/TrEMBL
Superfamily-SCOP SSF117892 UniProtKB/TrEMBL
UniProt A0A2R9BCK7 ENTREZGENE, UniProtKB/TrEMBL