EPHA5 (EPH receptor A5) - Rat Genome Database

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Gene: EPHA5 (EPH receptor A5) Pan paniscus
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Symbol: EPHA5
Name: EPH receptor A5
RGD ID: 11749432
Description: ENCODES a protein that exhibits ephrin receptor activity (ortholog); GPI-linked ephrin receptor activity (ortholog); growth factor binding (ortholog); INVOLVED IN axon guidance (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to forskolin (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH high grade glioma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN adherens junction (ortholog); axon (ortholog); cell periphery (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ephrin type-A receptor 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2364,222,358 - 64,574,467 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1464,447,417 - 64,799,360 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0458,392,771 - 58,743,604 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1464,767,083 - 65,113,510 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EPHA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2364,222,358 - 64,574,467 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1464,447,417 - 64,799,360 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0458,392,771 - 58,743,604 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1464,767,083 - 65,113,510 (+)NCBIpanpan1.1PanPan1.1panPan2
EPHA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38465,319,567 - 65,670,489 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl465,319,563 - 65,670,495 (-)EnsemblGRCh38hg38GRCh38
GRCh37466,185,285 - 66,536,207 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36465,872,241 - 66,218,104 (-)NCBINCBI36Build 36hg18NCBI36
Celera463,644,911 - 63,993,769 (-)NCBICelera
Cytogenetic Map4q13.1-q13.2NCBI
HuRef462,095,699 - 62,445,869 (-)NCBIHuRef
CHM1_1466,222,199 - 66,573,162 (-)NCBICHM1_1
T2T-CHM13v2.0468,756,500 - 69,108,844 (-)NCBIT2T-CHM13v2.0
Epha5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39584,199,024 - 84,565,677 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl584,202,620 - 84,565,241 (-)EnsemblGRCm39 Ensembl
GRCm38584,054,761 - 84,417,818 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl584,054,761 - 84,417,382 (-)EnsemblGRCm38mm10GRCm38
MGSCv37584,483,786 - 84,846,407 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36585,132,352 - 85,491,482 (-)NCBIMGSCv36mm8
Celera581,291,528 - 81,651,176 (-)NCBICelera
Cytogenetic Map5E1NCBI
cM Map543.0NCBI
Epha5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81424,007,400 - 24,374,854 (+)NCBIGRCr8
mRatBN7.21423,653,393 - 24,020,129 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1423,653,393 - 24,017,317 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1423,956,543 - 24,317,814 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01425,268,992 - 25,630,263 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01423,801,211 - 24,162,478 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01425,589,312 - 25,958,258 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1425,589,762 - 25,958,227 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01425,417,590 - 25,788,026 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41425,524,170 - 25,896,798 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11425,256,413 - 25,884,513 (+)NCBI
Celera1423,059,394 - 23,424,647 (+)NCBICelera
Cytogenetic Map14p21NCBI
Epha5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554477,066,111 - 7,382,046 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554477,066,111 - 7,382,046 (+)NCBIChiLan1.0ChiLan1.0
EPHA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11356,054,247 - 56,402,583 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1356,058,800 - 56,383,301 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1355,969,239 - 56,314,376 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01356,669,158 - 57,015,552 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1356,671,834 - 57,016,808 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11356,388,025 - 56,733,358 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01355,892,815 - 56,238,437 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01356,885,964 - 57,231,303 (-)NCBIUU_Cfam_GSD_1.0
Epha5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528519,941,499 - 20,271,236 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365822,505,145 - 2,830,014 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365822,503,546 - 2,832,950 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPHA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl863,287,711 - 63,604,734 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1863,285,006 - 63,604,734 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2867,246,392 - 67,540,677 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EPHA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.173,219,396 - 3,564,416 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl73,219,449 - 3,559,854 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660663,415,672 - 3,777,756 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epha5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247613,693,540 - 4,048,953 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247613,693,462 - 4,050,426 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_034958726   ⟹   XP_034814617
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2364,222,361 - 64,574,467 (+)NCBI
NHGRI_mPanPan1464,447,422 - 64,799,360 (+)NCBI
Mhudiblu_PPA_v0458,392,771 - 58,743,604 (+)NCBI
RefSeq Acc Id: XM_034958727   ⟹   XP_034814618
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2364,222,358 - 64,574,467 (+)NCBI
NHGRI_mPanPan1464,447,418 - 64,799,360 (+)NCBI
Mhudiblu_PPA_v0458,392,895 - 58,743,576 (+)NCBI
RefSeq Acc Id: XM_034958728   ⟹   XP_034814619
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2364,222,360 - 64,574,467 (+)NCBI
NHGRI_mPanPan1464,447,421 - 64,799,360 (+)NCBI
Mhudiblu_PPA_v0458,392,889 - 58,743,604 (+)NCBI
RefSeq Acc Id: XM_034958729   ⟹   XP_034814620
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2364,222,358 - 64,574,467 (+)NCBI
NHGRI_mPanPan1464,447,417 - 64,799,360 (+)NCBI
Mhudiblu_PPA_v0458,392,895 - 58,743,576 (+)NCBI
RefSeq Acc Id: XM_034958730   ⟹   XP_034814621
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2364,222,363 - 64,574,467 (+)NCBI
NHGRI_mPanPan1464,449,257 - 64,799,360 (+)NCBI
Mhudiblu_PPA_v0458,392,808 - 58,743,604 (+)NCBI
RefSeq Acc Id: XM_034958731   ⟹   XP_034814622
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2364,222,362 - 64,563,189 (+)NCBI
NHGRI_mPanPan1464,449,257 - 64,788,087 (+)NCBI
Mhudiblu_PPA_v0458,392,804 - 58,732,328 (+)NCBI
RefSeq Acc Id: XM_034958732   ⟹   XP_034814623
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2364,224,394 - 64,574,467 (+)NCBI
NHGRI_mPanPan1464,449,257 - 64,799,360 (+)NCBI
Mhudiblu_PPA_v0458,392,813 - 58,743,604 (+)NCBI
RefSeq Acc Id: XM_063603804   ⟹   XP_063459874
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2364,224,394 - 64,574,467 (+)NCBI
RefSeq Acc Id: XP_034814617   ⟸   XM_034958726
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034814622   ⟸   XM_034958731
- Peptide Label: isoform X7
RefSeq Acc Id: XP_034814621   ⟸   XM_034958730
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034814623   ⟸   XM_034958732
- Peptide Label: isoform X8
RefSeq Acc Id: XP_034814619   ⟸   XM_034958728
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034814618   ⟸   XM_034958727
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034814620   ⟸   XM_034958729
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063459874   ⟸   XM_063603804
- Peptide Label: isoform X5


Additional Information

Database Acc Id Source(s)
NCBI Gene EPHA5 ENTREZGENE