Epha5 (EPH receptor A5) - Rat Genome Database

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Gene: Epha5 (EPH receptor A5) Chinchilla lanigera
Analyze
Symbol: Epha5
Name: EPH receptor A5
RGD ID: 8784321
Description: ENCODES a protein that exhibits ephrin receptor activity (ortholog); GPI-linked ephrin receptor activity (ortholog); growth factor binding (ortholog); INVOLVED IN axon guidance (ortholog); cAMP-mediated signaling (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH genetic disease (ortholog); high grade glioma (ortholog); lung adenocarcinoma (ortholog); FOUND IN adherens junction (ortholog); axon (ortholog); cell periphery (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ephrin type-A receptor 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554477,066,111 - 7,382,046 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554477,066,111 - 7,382,046 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Epha5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554477,066,111 - 7,382,046 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554477,066,111 - 7,382,046 (+)NCBIChiLan1.0ChiLan1.0
EPHA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38465,319,567 - 65,670,489 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl465,319,563 - 65,670,495 (-)EnsemblGRCh38hg38GRCh38
GRCh37466,185,285 - 66,536,207 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36465,872,241 - 66,218,104 (-)NCBINCBI36Build 36hg18NCBI36
Celera463,644,911 - 63,993,769 (-)NCBICelera
Cytogenetic Map4q13.1-q13.2NCBI
HuRef462,095,699 - 62,445,869 (-)NCBIHuRef
CHM1_1466,222,199 - 66,573,162 (-)NCBICHM1_1
T2T-CHM13v2.0468,756,500 - 69,108,844 (-)NCBIT2T-CHM13v2.0
Epha5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39584,199,024 - 84,565,677 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl584,202,620 - 84,565,241 (-)EnsemblGRCm39 Ensembl
GRCm38584,054,761 - 84,417,818 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl584,054,761 - 84,417,382 (-)EnsemblGRCm38mm10GRCm38
MGSCv37584,483,786 - 84,846,407 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36585,132,352 - 85,491,482 (-)NCBIMGSCv36mm8
Celera581,291,528 - 81,651,176 (-)NCBICelera
Cytogenetic Map5E1NCBI
cM Map543.0NCBI
Epha5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81424,007,400 - 24,374,854 (+)NCBIGRCr8
mRatBN7.21423,653,393 - 24,020,129 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1423,653,393 - 24,017,317 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1423,956,543 - 24,317,814 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01425,268,992 - 25,630,263 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01423,801,211 - 24,162,478 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01425,589,312 - 25,958,258 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1425,589,762 - 25,958,227 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01425,417,590 - 25,788,026 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41425,524,170 - 25,896,798 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11425,256,413 - 25,884,513 (+)NCBI
Celera1423,059,394 - 23,424,647 (+)NCBICelera
Cytogenetic Map14p21NCBI
EPHA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2364,222,358 - 64,574,467 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1464,447,417 - 64,799,360 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0458,392,771 - 58,743,604 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1464,767,083 - 65,113,510 (+)NCBIpanpan1.1PanPan1.1panPan2
EPHA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11356,054,247 - 56,402,583 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1356,058,800 - 56,383,301 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1355,969,239 - 56,314,376 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01356,669,158 - 57,015,552 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1356,671,834 - 57,016,808 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11356,388,025 - 56,733,358 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01355,892,815 - 56,238,437 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01356,885,964 - 57,231,303 (-)NCBIUU_Cfam_GSD_1.0
Epha5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528519,941,499 - 20,271,236 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365822,505,145 - 2,830,014 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365822,503,546 - 2,832,950 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPHA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl863,287,711 - 63,604,734 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1863,285,006 - 63,604,734 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2867,246,392 - 67,540,677 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EPHA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.173,219,396 - 3,564,416 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl73,219,449 - 3,559,854 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660663,415,672 - 3,777,756 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epha5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247613,693,540 - 4,048,953 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247613,693,462 - 4,050,426 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000009946   ⟹   ENSCLAP00000009817
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554477,066,111 - 7,382,046 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000009947   ⟹   ENSCLAP00000009818
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554477,092,220 - 7,377,514 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000009948   ⟹   ENSCLAP00000009819
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554477,093,040 - 7,377,514 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000009949   ⟹   ENSCLAP00000009820
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554477,093,040 - 7,377,514 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000009950   ⟹   ENSCLAP00000009821
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554477,093,040 - 7,369,635 (+)Ensembl
RefSeq Acc Id: XM_005392842   ⟹   XP_005392899
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554477,066,111 - 7,382,046 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013518577   ⟹   XP_013374031
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554477,093,036 - 7,382,046 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005392899   ⟸   XM_005392842
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YMM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013374031   ⟸   XM_013518577
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YMM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000009817   ⟸   ENSCLAT00000009946
RefSeq Acc Id: ENSCLAP00000009818   ⟸   ENSCLAT00000009947
RefSeq Acc Id: ENSCLAP00000009819   ⟸   ENSCLAT00000009948
RefSeq Acc Id: ENSCLAP00000009820   ⟸   ENSCLAT00000009949
RefSeq Acc Id: ENSCLAP00000009821   ⟸   ENSCLAT00000009950
Protein Domains
Eph LBD   Fibronectin type-III   Protein kinase   SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006801 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009946 ENTREZGENE
  ENSCLAT00000009946.1 UniProtKB/TrEMBL
  ENSCLAT00000009947.1 UniProtKB/TrEMBL
  ENSCLAT00000009948.1 UniProtKB/TrEMBL
  ENSCLAT00000009949.1 UniProtKB/TrEMBL
  ENSCLAT00000009950 ENTREZGENE
  ENSCLAT00000009950.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  ephrin a2 ectodomain UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro Eph_TM UniProtKB/TrEMBL
  Ephrin_rcpt_lig-bd_dom UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr-kin_ephrin_A/B_rcpt-like UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_ephrin_rcpt UniProtKB/TrEMBL
  Tyr_kinase_rcpt_V_CS UniProtKB/TrEMBL
NCBI Gene Epha5 ENTREZGENE
PANTHER EPH RECEPTOR A5 UniProtKB/TrEMBL
  EPHRIN TYPE-A RECEPTOR 5 UniProtKB/TrEMBL
Pfam EphA2_TM UniProtKB/TrEMBL
  Ephrin_lbd UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  PK_Tyr_Ser-Thr UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
PIRSF TyrPK_ephrin_receptor UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/TrEMBL
  TYRKINASE UniProtKB/TrEMBL
PROSITE EPH_LBD UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_1 UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_2 UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/TrEMBL
SMART EPH_lbd UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  TyrKc UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A8C2V4D9_CHILA UniProtKB/TrEMBL
  A0A8C2V4Y2_CHILA UniProtKB/TrEMBL
  A0A8C2V779_CHILA UniProtKB/TrEMBL
  A0A8C2VAC4_CHILA UniProtKB/TrEMBL
  A0A8C2YMM0 ENTREZGENE, UniProtKB/TrEMBL