BNC1 (basonuclin zinc finger protein 1) - Rat Genome Database

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Gene: BNC1 (basonuclin zinc finger protein 1) Pan paniscus
Analyze
Symbol: BNC1
Name: basonuclin zinc finger protein 1
RGD ID: 11704826
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity (inferred); rDNA binding (inferred); INVOLVED IN chromosome organization (ortholog); epithelial cell proliferation (ortholog); positive regulation of epithelial cell proliferation (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: basonuclin 1; zinc finger protein basonuclin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21672,603,533 - 72,632,390 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11576,765,127 - 76,792,466 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01562,316,229 - 62,345,123 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11581,146,417 - 81,174,007 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1581,146,417 - 81,174,007 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleolus  (ISO)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BNC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21672,603,533 - 72,632,390 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11576,765,127 - 76,792,466 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01562,316,229 - 62,345,123 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11581,146,417 - 81,174,007 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1581,146,417 - 81,174,007 (-)Ensemblpanpan1.1panPan2
BNC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381583,255,884 - 83,284,664 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1583,255,884 - 83,284,664 (-)EnsemblGRCh38hg38GRCh38
GRCh371583,924,636 - 83,953,416 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361581,715,659 - 81,744,472 (-)NCBINCBI36Build 36hg18NCBI36
Build 341581,715,658 - 81,744,472NCBI
Celera1560,632,983 - 60,659,894 (+)NCBICelera
Cytogenetic Map15q25.2NCBI
HuRef1560,188,348 - 60,215,945 (-)NCBIHuRef
CHM1_11583,666,114 - 83,694,927 (-)NCBICHM1_1
T2T-CHM13v2.01581,123,798 - 81,152,590 (-)NCBIT2T-CHM13v2.0
Bnc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39781,616,401 - 81,642,047 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl781,616,401 - 81,642,055 (-)EnsemblGRCm39 Ensembl
GRCm38781,966,657 - 81,992,299 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl781,966,653 - 81,992,307 (-)EnsemblGRCm38mm10GRCm38
MGSCv37789,111,548 - 89,137,185 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36781,840,344 - 81,865,759 (-)NCBIMGSCv36mm8
Celera779,379,525 - 79,405,162 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map745.71NCBI
Bnc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81145,326,881 - 145,352,534 (-)NCBIGRCr8
mRatBN7.21135,917,676 - 135,943,333 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,917,687 - 135,943,333 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1143,839,173 - 143,864,883 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01151,008,397 - 151,034,107 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01143,915,669 - 143,941,382 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01143,869,440 - 143,878,077 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01143,793,280 - 143,818,748 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1143,793,064 - 143,818,706 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01144,808,480 - 144,817,117 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01144,734,051 - 144,759,452 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41138,189,334 - 138,201,795 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11138,269,498 - 138,280,219 (-)NCBI
Celera1127,967,966 - 127,993,622 (-)NCBICelera
Cytogenetic Map1q31NCBI
Bnc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541613,428,760 - 13,440,921 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541613,428,760 - 13,440,837 (+)NCBIChiLan1.0ChiLan1.0
BNC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1355,040,538 - 55,068,223 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl355,040,704 - 55,068,974 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha357,679,397 - 57,706,864 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0355,452,369 - 55,479,839 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl355,452,393 - 55,480,041 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1354,977,712 - 55,005,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0355,187,285 - 55,214,745 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0355,524,403 - 55,552,090 (-)NCBIUU_Cfam_GSD_1.0
Bnc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640128,422,595 - 128,434,352 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648317,900,189 - 17,911,948 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648317,900,189 - 17,911,925 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BNC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl751,652,542 - 51,679,775 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1751,651,179 - 51,679,781 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2757,139,471 - 57,168,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BNC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1292,331,958 - 2,360,832 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl292,349,650 - 2,360,804 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605944,740,636 - 44,766,600 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bnc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476819,013,480 - 19,024,025 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476819,011,971 - 19,035,717 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000012699   ⟹   ENSPPAP00000002679
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1581,146,417 - 81,174,007 (-)Ensembl
RefSeq Acc Id: XM_008968227   ⟹   XP_008966475
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21672,604,768 - 72,632,390 (+)NCBI
NHGRI_mPanPan11576,766,341 - 76,792,466 (+)NCBI
Mhudiblu_PPA_v01562,317,488 - 62,345,123 (+)NCBI
PanPan1.11581,146,417 - 81,174,007 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034939295   ⟹   XP_034795186
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21672,603,533 - 72,632,390 (+)NCBI
NHGRI_mPanPan11576,765,127 - 76,792,466 (+)NCBI
Mhudiblu_PPA_v01562,316,229 - 62,345,123 (+)NCBI
RefSeq Acc Id: XM_034939296   ⟹   XP_034795187
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21672,622,112 - 72,632,384 (+)NCBI
NHGRI_mPanPan11576,783,700 - 76,792,466 (+)NCBI
Mhudiblu_PPA_v01562,335,012 - 62,345,123 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008966475 (Get FASTA)   NCBI Sequence Viewer  
  XP_034795186 (Get FASTA)   NCBI Sequence Viewer  
  XP_034795187 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABM54345 (Get FASTA)   NCBI Sequence Viewer  
  ABM54346 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002679.1
RefSeq Acc Id: XP_008966475   ⟸   XM_008968227
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZJ29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034795186   ⟸   XM_034939295
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZJ29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034795187   ⟸   XM_034939296
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZJ29 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000002679   ⟸   ENSPPAT00000012699
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000011672 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000012699.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Disconnected-like UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100967888 UniProtKB/TrEMBL
NCBI Gene BNC1 ENTREZGENE
PANTHER PTHR15021 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN BASONUCLIN-1 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R8ZJ29 ENTREZGENE, UniProtKB/TrEMBL
  A1YGC0_PANPA UniProtKB/TrEMBL
  A1YGC1_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-13 BNC1  basonuclin zinc finger protein 1  BNC1  basonuclin 1  Symbol and/or name change 5135510 APPROVED