BNC1 (basonuclin zinc finger protein 1) - Rat Genome Database

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Gene: BNC1 (basonuclin zinc finger protein 1) Sus scrofa
Analyze
Symbol: BNC1
Name: basonuclin zinc finger protein 1
RGD ID: 14009375
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity (inferred); rDNA binding (inferred); INVOLVED IN chromosome organization (ortholog); epithelial cell proliferation (ortholog); positive regulation of epithelial cell proliferation (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: basonuclin 1; zinc finger protein basonuclin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl751,652,542 - 51,679,775 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1751,651,179 - 51,679,781 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2757,139,471 - 57,168,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleolus  (ISO)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BNC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl751,652,542 - 51,679,775 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1751,651,179 - 51,679,781 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2757,139,471 - 57,168,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BNC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381583,255,884 - 83,284,664 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1583,255,884 - 83,284,664 (-)EnsemblGRCh38hg38GRCh38
GRCh371583,924,636 - 83,953,416 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361581,715,659 - 81,744,472 (-)NCBINCBI36Build 36hg18NCBI36
Build 341581,715,658 - 81,744,472NCBI
Celera1560,632,983 - 60,659,894 (+)NCBICelera
Cytogenetic Map15q25.2NCBI
HuRef1560,188,348 - 60,215,945 (-)NCBIHuRef
CHM1_11583,666,114 - 83,694,927 (-)NCBICHM1_1
T2T-CHM13v2.01581,123,798 - 81,152,590 (-)NCBIT2T-CHM13v2.0
Bnc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39781,616,401 - 81,642,047 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl781,616,401 - 81,642,055 (-)EnsemblGRCm39 Ensembl
GRCm38781,966,657 - 81,992,299 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl781,966,653 - 81,992,307 (-)EnsemblGRCm38mm10GRCm38
MGSCv37789,111,548 - 89,137,185 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36781,840,344 - 81,865,759 (-)NCBIMGSCv36mm8
Celera779,379,525 - 79,405,162 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map745.71NCBI
Bnc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81145,326,881 - 145,352,534 (-)NCBIGRCr8
mRatBN7.21135,917,676 - 135,943,333 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,917,687 - 135,943,333 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1143,839,173 - 143,864,883 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01151,008,397 - 151,034,107 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01143,915,669 - 143,941,382 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01143,869,440 - 143,878,077 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01143,793,280 - 143,818,748 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1143,793,064 - 143,818,706 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01144,808,480 - 144,817,117 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01144,734,051 - 144,759,452 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41138,189,334 - 138,201,795 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11138,269,498 - 138,280,219 (-)NCBI
Celera1127,967,966 - 127,993,622 (-)NCBICelera
Cytogenetic Map1q31NCBI
Bnc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541613,428,760 - 13,440,921 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541613,428,760 - 13,440,837 (+)NCBIChiLan1.0ChiLan1.0
BNC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21672,603,533 - 72,632,390 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11576,765,127 - 76,792,466 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01562,316,229 - 62,345,123 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11581,146,417 - 81,174,007 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1581,146,417 - 81,174,007 (-)Ensemblpanpan1.1panPan2
BNC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1355,040,538 - 55,068,223 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl355,040,704 - 55,068,974 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha357,679,397 - 57,706,864 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0355,452,369 - 55,479,839 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl355,452,393 - 55,480,041 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1354,977,712 - 55,005,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0355,187,285 - 55,214,745 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0355,524,403 - 55,552,090 (-)NCBIUU_Cfam_GSD_1.0
Bnc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640128,422,595 - 128,434,352 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648317,900,189 - 17,911,948 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648317,900,189 - 17,911,925 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BNC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1292,331,958 - 2,360,832 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl292,349,650 - 2,360,804 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605944,740,636 - 44,766,600 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bnc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476819,013,480 - 19,024,025 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476819,011,971 - 19,035,717 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BNC1
666 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 1 7 2 3 4 5 7 2 3 1

Sequence


Ensembl Acc Id: ENSSSCT00000002014   ⟹   ENSSSCP00000001965
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl751,651,172 - 51,679,776 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000047099   ⟹   ENSSSCP00000049276
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl751,652,542 - 51,679,775 (+)Ensembl
RefSeq Acc Id: XM_003128450   ⟹   XP_003128498
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1751,651,179 - 51,679,781 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098879   ⟹   XP_020954538
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1751,651,949 - 51,679,781 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003128498   ⟸   XM_003128450
- Peptide Label: isoform X1
- UniProtKB: F1RIB5 (UniProtKB/TrEMBL),   A0A4X1UM15 (UniProtKB/TrEMBL),   A0A8D0J0G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954538   ⟸   XM_021098879
- Peptide Label: isoform X2
- UniProtKB: A0A4X1UP83 (UniProtKB/TrEMBL),   A0A287AYN8 (UniProtKB/TrEMBL),   A0A8D0J0G4 (UniProtKB/TrEMBL),   A0A8D0QIF9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000001965   ⟸   ENSSSCT00000002014
Ensembl Acc Id: ENSSSCP00000049276   ⟸   ENSSSCT00000047099
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001798 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005018476 UniProtKB/TrEMBL
  ENSSSCG00015027572 UniProtKB/TrEMBL
  ENSSSCG00025000151 UniProtKB/TrEMBL
  ENSSSCG00030063002 UniProtKB/TrEMBL
  ENSSSCG00035072179 UniProtKB/TrEMBL
  ENSSSCG00040000021 UniProtKB/TrEMBL
  ENSSSCG00045003107 UniProtKB/TrEMBL
  ENSSSCG00050071365 UniProtKB/TrEMBL
  ENSSSCG00055020123 UniProtKB/TrEMBL
  ENSSSCG00060011497 UniProtKB/TrEMBL
  ENSSSCG00065038370 UniProtKB/TrEMBL
  ENSSSCG00070018374 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000047099 ENTREZGENE
  ENSSSCT00000047099.3 UniProtKB/TrEMBL
  ENSSSCT00005029156.1 UniProtKB/TrEMBL
  ENSSSCT00005029234.1 UniProtKB/TrEMBL
  ENSSSCT00015036600.1 UniProtKB/TrEMBL
  ENSSSCT00025000200.1 UniProtKB/TrEMBL
  ENSSSCT00030088158.1 UniProtKB/TrEMBL
  ENSSSCT00035097667.1 UniProtKB/TrEMBL
  ENSSSCT00035097680.1 UniProtKB/TrEMBL
  ENSSSCT00040000024.1 UniProtKB/TrEMBL
  ENSSSCT00045004993.1 UniProtKB/TrEMBL
  ENSSSCT00050097320.1 UniProtKB/TrEMBL
  ENSSSCT00055039580.1 UniProtKB/TrEMBL
  ENSSSCT00055039655.1 UniProtKB/TrEMBL
  ENSSSCT00060015025.1 UniProtKB/TrEMBL
  ENSSSCT00065052443.1 UniProtKB/TrEMBL
  ENSSSCT00070036251.1 UniProtKB/TrEMBL
  ENSSSCT00070036253.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Disconnected-like UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100156444 UniProtKB/TrEMBL
NCBI Gene BNC1 ENTREZGENE
PANTHER PTHR15021 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN BASONUCLIN-1 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
UniProt A0A287AYN8 ENTREZGENE
  A0A4X1UM15 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UP83 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J0G4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QIF9 ENTREZGENE, UniProtKB/TrEMBL
  F1RIB5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287AYN8 UniProtKB/TrEMBL
VGNC ID VGNC:85851 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-05 BNC1  basonuclin zinc finger protein 1  BNC1  basonuclin 1  Symbol and/or name change 19259463 PROVISIONAL