NANOS2 (nanos C2HC-type zinc finger 2) - Rat Genome Database

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Gene: NANOS2 (nanos C2HC-type zinc finger 2) Pan paniscus
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Symbol: NANOS2
Name: nanos C2HC-type zinc finger 2
RGD ID: 11704628
Description: ENCODES a protein that exhibits enzyme activator activity (inferred); metal ion binding (inferred); mRNA binding (inferred); INVOLVED IN spermatogenesis (ortholog); ASSOCIATED WITH male infertility (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); P-body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nanos homolog 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22052,077,294 - 52,086,515 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,948,686 - 53,957,908 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,922,655 - 42,924,679 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11951,458,466 - 51,460,116 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1951,459,529 - 51,459,945 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NANOS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22052,077,294 - 52,086,515 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,948,686 - 53,957,908 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,922,655 - 42,924,679 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11951,458,466 - 51,460,116 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1951,459,529 - 51,459,945 (-)Ensemblpanpan1.1panPan2
NANOS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,913,214 - 45,914,778 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,913,214 - 45,914,778 (-)EnsemblGRCh38hg38GRCh38
GRCh371946,416,472 - 46,418,036 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,108,312 - 51,109,876 (-)NCBINCBI36Build 36hg18NCBI36
Build 341951,108,314 - 51,109,876NCBI
Celera1943,221,499 - 43,223,063 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,844,824 - 42,846,388 (-)NCBIHuRef
CHM1_11946,418,965 - 46,420,529 (-)NCBICHM1_1
T2T-CHM13v2.01948,740,655 - 48,742,219 (-)NCBIT2T-CHM13v2.0
Nanos2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,721,449 - 18,722,887 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,721,325 - 18,722,887 (+)EnsemblGRCm39 Ensembl
GRCm38718,987,524 - 18,988,962 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl718,987,400 - 18,988,962 (+)EnsemblGRCm38mm10GRCm38
MGSCv37719,572,873 - 19,574,311 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,146,046 - 18,147,484 (+)NCBIMGSCv36mm8
Celera716,399,407 - 16,400,845 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.45NCBI
Nanos2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,763,716 - 87,765,176 (+)NCBIGRCr8
mRatBN7.2178,635,668 - 78,637,128 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,635,668 - 78,637,128 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,024,658 - 84,026,118 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,582,270 - 92,583,730 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,779,762 - 85,781,222 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,894,450 - 79,895,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,894,450 - 79,895,910 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,155,091 - 81,156,551 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,341,105 - 78,342,565 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera173,101,755 - 73,103,215 (+)NCBICelera
Cytogenetic Map1q21NCBI
Nanos2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574333,116 - 333,529 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955574333,007 - 333,529 (-)NCBIChiLan1.0ChiLan1.0
NANOS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,716,634 - 109,717,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,716,699 - 109,717,115 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,202,035 - 109,203,102 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,251,017 - 110,252,084 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,251,082 - 110,251,498 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11109,925,501 - 109,926,568 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,560,220 - 109,561,287 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,428,944 - 110,430,011 (+)NCBIUU_Cfam_GSD_1.0
Nanos2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,884,913 - 17,885,868 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367062,232,265 - 2,232,657 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367062,232,265 - 2,232,657 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NANOS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,219,418 - 52,219,834 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,218,889 - 52,219,834 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,481,251 - 47,481,667 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NANOS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1639,359,581 - 39,361,699 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl639,360,640 - 39,361,056 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607319,001,703 - 19,003,343 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nanos2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248327,309,334 - 7,310,645 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000022548   ⟹   ENSPPAP00000004923
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1951,459,529 - 51,459,945 (-)Ensembl
RefSeq Acc Id: XM_055103567   ⟹   XP_054959542
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22052,077,294 - 52,086,515 (-)NCBI
NHGRI_mPanPan11953,948,686 - 53,957,908 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054959542 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000004923.1
Ensembl Acc Id: ENSPPAP00000004923   ⟸   ENSPPAT00000022548
RefSeq Acc Id: XP_054959542   ⟸   XM_055103567
- UniProtKB: A0A2R8ZIX2 (UniProtKB/TrEMBL)
Protein Domains
Nanos-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000020568 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000022548.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.60.30 UniProtKB/TrEMBL
InterPro Nanos/Xcar2 UniProtKB/TrEMBL
  Nanos_sf UniProtKB/TrEMBL
  Znf_nanos-typ UniProtKB/TrEMBL
KEGG Report pps:100982866 UniProtKB/TrEMBL
NCBI Gene NANOS2 ENTREZGENE
PANTHER NANOS HOMOLOG 2 UniProtKB/TrEMBL
  PTHR12887 UniProtKB/TrEMBL
Pfam zf-nanos UniProtKB/TrEMBL
PROSITE ZF_NANOS UniProtKB/TrEMBL
UniProt A0A2R8ZIX2 ENTREZGENE, UniProtKB/TrEMBL