Advanced Search (OLGA)

Gene: FANCA (FA complementation group A) Pan paniscus

Subscribe to Updates

Analyze

Symbol:

FANCA

Name:

FA complementation group A

RGD ID:

11700122

Description:

INVOLVED IN regulation of DNA-binding transcription factor activity (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adenoid cystic carcinoma (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); FOUND IN chromatin (inferred); Fanconi anaemia nuclear complex (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Fanconi anemia complementation group A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	99,585,370 - 99,668,686 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	105,473,180 - 105,555,774 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	70,495,310 - 70,579,275 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	90,162,900 - 90,245,190 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	90,163,950 - 90,245,147 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
FANCA	Bonobo	acute myeloid leukemia		ISO	FANCA (Homo sapiens)	9068941	DNA more ...	RGD	PMID:14749703 and REF_RGD_ID:11344889
FANCA	Bonobo	cervical cancer		ISO	FANCA (Homo sapiens)	9068941	DNA:SNPs more ...	RGD	PMID:19012493 and REF_RGD_ID:11344886
FANCA	Bonobo	cervical cancer	no_association	ISO	FANCA (Homo sapiens)	9068941	DNA:SNP: :rs11649196 (human)	RGD	PMID:21543111 and REF_RGD_ID:11344901
FANCA	Bonobo	esophagus squamous cell carcinoma		ISO	FANCA (Homo sapiens)	9068941	DNA:missense mutation: :p.S858R (human)	RGD	PMID:21279724 and REF_RGD_ID:11344913
FANCA	Bonobo	Fanconi anemia	disease_progression	ISO	FANCA (Homo sapiens)	9068941	DNA:deletion	RGD	PMID:11110674 and REF_RGD_ID:11344914
FANCA	Bonobo	infertility		ISO	Fanca (Mus musculus)	9068941	associated with Hypogonadism	RGD	PMID:10915769 and REF_RGD_ID:11344895
FANCA	Bonobo	Insulin Resistance		ISO	Fanca (Mus musculus)	9068941		RGD	PMID:22482891 and REF_RGD_ID:11046266
FANCA	Bonobo	obesity		ISO	Fanca (Mus musculus)	9068941		RGD	PMID:22482891 and REF_RGD_ID:11046266
FANCA	Bonobo	pancreatic cancer		ISO	FANCA (Homo sapiens)	9068941	DNA more ...	RGD	PMID:15591268 and REF_RGD_ID:2317735
FANCA	Bonobo	skin melanoma	disease_progression	ISO	FANCA (Homo sapiens)	9068941	DNA:SNP: :rs62068372 (human)	RGD	PMID:25243787 and REF_RGD_ID:11344896
FANCA	Bonobo	urinary bladder cancer		ISO	FANCA (Homo sapiens)	9068941		RGD	PMID:19237606 and REF_RGD_ID:11344902

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
FANCA	Bonobo	autosomal recessive chronic granulomatous disease 4		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Granulomatous disease more ...	ClinVar	PMID:28492532
FANCA	Bonobo	breast cancer		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Malignant tumor of breast	ClinVar	PMID:24728327 more ...
FANCA	Bonobo	diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtype		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Diffuse pediatric-type high-grade glioma and H3-wildtype and IDH-wildtype	ClinVar	PMID:25741868
FANCA	Bonobo	familial melanoma		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Melanoma more ...	ClinVar	PMID:28492532
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Fanconi anemia	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Fanconi anemia	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Fanconi anemia	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Fanconi anemia	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Fanconi anemia	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Fanconi anemia	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia complementation group A		ISO	FANCA (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	Fanconi anemia complementation group A		ISO	FANCA (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:08896563 more ...
FANCA	Bonobo	genetic disease		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:14695169 more ...
FANCA	Bonobo	hepatoblastoma		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hepatoblastoma	ClinVar	PMID:24728327 more ...
FANCA	Bonobo	Hereditary Neoplastic Syndromes		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hereditary cancer-predisposing syndrome	ClinVar	PMID:17924555 more ...
FANCA	Bonobo	high grade glioma		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Pediatric high-grade glioma	ClinVar	PMID:25741868
FANCA	Bonobo	KBG syndrome		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: KBG syndrome	ClinVar	PMID:28492532 and PMID:31602316
FANCA	Bonobo	microcephaly		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Microcephaly	ClinVar	PMID:25741868 more ...
FANCA	Bonobo	neuroblastoma		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neuroblastoma	ClinVar	PMID:15059067 more ...
FANCA	Bonobo	Neurodevelopmental Disorders		ISO	FANCA (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868
FANCA	Bonobo	ovarian cancer		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Ovarian cancer	ClinVar	PMID:22950077 more ...
FANCA	Bonobo	Pituitary Stalk Interruption Syndrome		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Pituitary stalk interruption syndrome	ClinVar	PMID:10521298 more ...
FANCA	Bonobo	primary ciliary dyskinesia 33		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary ciliary dyskinesia 33	ClinVar	PMID:28492532
FANCA	Bonobo	primary ovarian insufficiency		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Premature ovarian failure	ClinVar	PMID:25741868 and PMID:28492532
FANCA	Bonobo	prostate cancer		ISO	FANCA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Malignant tumor of prostate	ClinVar	PMID:10094191 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
FANCA	Bonobo	adenoid cystic carcinoma		ISO	FANCA (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:16762588
FANCA	Bonobo	hyperinsulinism		ISO	FANCA (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:22482891
FANCA	Bonobo	Salivary Gland Neoplasms		ISO	FANCA (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:16762588
FANCA	Bonobo	urinary bladder cancer		ISO	FANCA (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:24121791

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
FANCA	Bonobo	Fanconi anemia complementation group A		ISO	FANCA (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
FANCA	Bonobo	female gonad development	acts_upstream_of_or_within	IEA	UniProtKB:Q9JL70 and ensembl:ENSMUSP00000045217	150520179		Ensembl	GO_REF:0000107
FANCA	Bonobo	interstrand cross-link repair	involved_in	IEA	InterPro:IPR003516	150520179		InterPro	GO_REF:0000002
FANCA	Bonobo	male gonad development	acts_upstream_of_or_within	IEA	UniProtKB:Q9JL70 and ensembl:ENSMUSP00000045217	150520179		Ensembl	GO_REF:0000107
FANCA	Bonobo	male meiotic nuclear division	acts_upstream_of_or_within	IEA	UniProtKB:Q9JL70 and ensembl:ENSMUSP00000045217	150520179		Ensembl	GO_REF:0000107
FANCA	Bonobo	regulation of CD40 signaling pathway	acts_upstream_of_or_within	IEA	UniProtKB:Q9JL70 and ensembl:ENSMUSP00000045217	150520179		Ensembl	GO_REF:0000107
FANCA	Bonobo	regulation of DNA-binding transcription factor activity	acts_upstream_of_or_within	ISO	MGI:2674094	9068941	PMID:24501220	MGI	PMID:24501220
FANCA	Bonobo	regulation of germ cell proliferation	acts_upstream_of_or_within	IEA	UniProtKB:Q9JL70 and ensembl:ENSMUSP00000045217	150520179		Ensembl	GO_REF:0000107
FANCA	Bonobo	regulation of inflammatory response	acts_upstream_of_or_within	IEA	UniProtKB:Q9JL70 and ensembl:ENSMUSP00000045217	150520179		Ensembl	GO_REF:0000107
FANCA	Bonobo	regulation of regulatory T cell differentiation	acts_upstream_of_or_within	IEA	UniProtKB:Q9JL70 and ensembl:ENSMUSP00000045217	150520179		Ensembl	GO_REF:0000107
FANCA	Bonobo	regulation of regulatory T cell differentiation	involved_in	IEA	PANTHER:PTN000248177	150520179		TreeGrafter	GO_REF:0000118

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
FANCA	Bonobo	chromatin	located_in	IEA	UniProtKB:O15360 and ensembl:ENSP00000373952	150520179		Ensembl	GO_REF:0000107
FANCA	Bonobo	Fanconi anaemia nuclear complex	part_of	IEA	UniProtKB:O15360 and ensembl:ENSP00000373952	150520179		Ensembl	GO_REF:0000107
FANCA	Bonobo	Fanconi anaemia nuclear complex	part_of	IEA	PANTHER:PTN000248177	150520179		TreeGrafter	GO_REF:0000118
FANCA	Bonobo	Fanconi anaemia nuclear complex	part_of	IEA	InterPro:IPR003516	150520179		InterPro	GO_REF:0000002
FANCA	Bonobo	nucleoplasm	located_in	IEA	UniProtKB:O15360 and ensembl:ENSP00000373952	150520179		Ensembl	GO_REF:0000107
FANCA	Bonobo	nucleus	located_in	IEA	UniProtKB:O15360 and ensembl:ENSP00000373952	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
FANCA	Bonobo	protein binding	enables	ISO	UniProtKB:P51532	9068941	PMID:11726552	BHF-UCL	PMID:11726552
FANCA	Bonobo	protein binding	enables	ISO	UniProtKB:O15287 and UniProtKB:Q0VG06	9068941	PMID:17396147	IntAct	PMID:17396147
FANCA	Bonobo	protein binding	enables	ISO	UniProtKB:O15287 and UniProtKB:Q9NPI8	9068941	PMID:11063725 and PMID:12649160	IntAct	PMID:11063725 and PMID:12649160
FANCA	Bonobo	protein binding	enables	ISO	UniProtKB:Q6NZ36	9068941	PMID:22343915 and PMID:22705371	UniProt	PMID:22343915 and PMID:22705371
FANCA	Bonobo	protein binding	enables	ISO	UniProtKB:Q92889	9068941	PMID:12571280	UniProt	PMID:12571280
FANCA	Bonobo	protein binding	enables	ISO	UniProtKB:Q0VG06	9068941	PMID:35271311	IntAct	PMID:35271311
FANCA	Bonobo	protein binding	enables	ISO	UniProtKB:O15287	9068941	PMID:10627486 more ...	IntAct	PMID:10627486 more ...
FANCA	Bonobo	protein binding	enables	ISO	UniProtKB:Q6NZ36-1	9068941	PMID:22266823	IntAct	PMID:22266823
FANCA	Bonobo	protein binding	enables	ISO	UniProtKB:P62993	9068941	PMID:17474147	IntAct	PMID:17474147

PMID:22301074	PMID:30032202

FANCA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	99,585,370 - 99,668,686 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	105,473,180 - 105,555,774 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	70,495,310 - 70,579,275 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	90,162,900 - 90,245,190 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	90,163,950 - 90,245,147 (-)	Ensembl	panpan1.1		panPan2

FANCA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	89,737,549 - 89,816,647 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	89,726,683 - 89,816,977 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	89,803,957 - 89,883,055 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	88,331,460 - 88,410,566 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	88,331,459 - 88,410,555	NCBI
Celera	16	74,868,202 - 74,947,293 (-)	NCBI		Celera
Cytogenetic Map	16	q24.3	NCBI
HuRef	16	75,499,171 - 75,578,023 (-)	NCBI		HuRef
CHM1_1	16	91,215,162 - 91,294,341 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	95,822,301 - 95,901,198 (-)	NCBI		T2T-CHM13v2.0

Fanca
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	123,993,033 - 124,045,390 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	123,995,039 - 124,045,315 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	123,266,294 - 123,318,651 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	123,268,300 - 123,318,576 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	125,792,144 - 125,842,476 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	126,154,390 - 126,204,666 (-)	NCBI		MGSCv36	mm8
Celera	8	127,507,685 - 127,559,921 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	72.1	NCBI

Fanca
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	68,210,562 - 68,271,080 (-)	NCBI		GRCr8
mRatBN7.2	19	51,304,126 - 51,362,586 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	51,304,021 - 51,362,527 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	58,099,010 - 58,156,795 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	58,779,050 - 58,837,262 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	60,997,616 - 61,055,403 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	56,067,548 - 56,126,075 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	56,067,548 - 56,126,063 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	67,115,679 - 67,132,939 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	19	66,772,525 - 66,837,134 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	53,587,849 - 53,647,780 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	53,592,974 - 53,652,636 (-)	NCBI
Celera	19	50,539,880 - 50,598,370 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Fanca
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955541	3,273,022 - 3,320,052 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955541	3,272,936 - 3,320,229 (-)	NCBI	ChiLan1.0	ChiLan1.0

FANCA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	63,778,149 - 63,838,869 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	63,778,212 - 63,838,823 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	63,791,001 - 63,853,152 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	64,006,193 - 64,068,100 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	64,006,249 - 64,066,477 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	64,026,242 - 64,086,986 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	63,863,551 - 63,925,841 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	64,270,126 - 64,332,344 (+)	NCBI		UU_Cfam_GSD_1.0

Fanca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	24,527,532 - 24,567,237 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936641	281,073 - 324,053 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936641	281,119 - 319,796 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FANCA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	253,207 - 300,152 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	253,207 - 300,159 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	378,761 - 425,687 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FANCA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	75,073,161 - 75,149,110 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	75,073,358 - 75,148,591 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	286,358 - 422,323 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fanca
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	215,193 - 252,569 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	206,069 - 253,473 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_034941081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055100552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057300137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063597833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063597835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063597836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_008621495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000043068 ⟹ ENSPPAP00000020276

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	16	90,163,950 - 90,245,147 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000043077 ⟹ ENSPPAP00000020285

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	16	90,224,926 - 90,245,147 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000043082 ⟹ ENSPPAP00000020290

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	16	90,224,947 - 90,245,147 (-)	Ensembl

RefSeq Acc Id:

XM_034941081 ⟹ XP_034796972

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,585,370 - 99,668,686 (-)	NCBI
NHGRI_mPanPan1	16	105,473,180 - 105,555,774 (-)	NCBI
Mhudiblu_PPA_v0	16	70,495,310 - 70,579,275 (-)	NCBI

RefSeq Acc Id:

XM_034941083 ⟹ XP_034796974

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,585,370 - 99,668,686 (-)	NCBI
NHGRI_mPanPan1	16	105,473,180 - 105,555,774 (-)	NCBI
Mhudiblu_PPA_v0	16	70,496,265 - 70,579,275 (-)	NCBI

RefSeq Acc Id:

XM_034941085 ⟹ XP_034796976

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,585,370 - 99,668,686 (-)	NCBI
NHGRI_mPanPan1	16	105,473,180 - 105,555,774 (-)	NCBI
Mhudiblu_PPA_v0	16	70,496,265 - 70,579,275 (-)	NCBI

RefSeq Acc Id:

XM_034941086 ⟹ XP_034796977

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,585,370 - 99,668,686 (-)	NCBI
NHGRI_mPanPan1	16	105,473,180 - 105,555,774 (-)	NCBI
Mhudiblu_PPA_v0	16	70,496,265 - 70,579,275 (-)	NCBI

RefSeq Acc Id:

XM_034941087 ⟹ XP_034796978

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,585,370 - 99,668,686 (-)	NCBI
NHGRI_mPanPan1	16	105,473,180 - 105,555,774 (-)	NCBI
Mhudiblu_PPA_v0	16	70,496,265 - 70,579,275 (-)	NCBI

RefSeq Acc Id:

XM_034941089 ⟹ XP_034796980

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,586,867 - 99,668,686 (-)	NCBI
NHGRI_mPanPan1	16	105,475,623 - 105,555,774 (-)	NCBI
Mhudiblu_PPA_v0	16	70,497,753 - 70,579,275 (-)	NCBI

RefSeq Acc Id:

XM_034941093 ⟹ XP_034796984

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,645,263 - 99,668,686 (-)	NCBI
NHGRI_mPanPan1	16	105,532,008 - 105,555,774 (-)	NCBI
Mhudiblu_PPA_v0	16	70,557,858 - 70,579,275 (-)	NCBI

RefSeq Acc Id:

XM_055100552 ⟹ XP_054956527

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,606,127 - 99,668,686 (-)	NCBI
NHGRI_mPanPan1	16	105,494,697 - 105,555,774 (-)	NCBI

RefSeq Acc Id:

XM_057300137 ⟹ XP_057156120

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,645,262 - 99,668,686 (-)	NCBI
NHGRI_mPanPan1	16	105,532,008 - 105,555,774 (-)	NCBI

RefSeq Acc Id:

XM_063597833 ⟹ XP_063453903

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,586,026 - 99,668,686 (-)	NCBI

RefSeq Acc Id:

XM_063597835 ⟹ XP_063453905

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,593,349 - 99,668,686 (-)	NCBI

RefSeq Acc Id:

XM_063597836 ⟹ XP_063453906

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,593,349 - 99,668,686 (-)	NCBI

RefSeq Acc Id:

XR_008621495

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	99,632,402 - 99,668,686 (-)	NCBI
NHGRI_mPanPan1	16	105,520,947 - 105,555,774 (-)	NCBI


Protein RefSeqs	XP_034796972	(Get FASTA)	NCBI Sequence Viewer
	XP_034796974	(Get FASTA)	NCBI Sequence Viewer
	XP_034796976	(Get FASTA)	NCBI Sequence Viewer
	XP_034796977	(Get FASTA)	NCBI Sequence Viewer
	XP_034796978	(Get FASTA)	NCBI Sequence Viewer
	XP_034796980	(Get FASTA)	NCBI Sequence Viewer
	XP_034796984	(Get FASTA)	NCBI Sequence Viewer
	XP_054956527	(Get FASTA)	NCBI Sequence Viewer
	XP_057156120	(Get FASTA)	NCBI Sequence Viewer
	XP_063453903	(Get FASTA)	NCBI Sequence Viewer
	XP_063453905	(Get FASTA)	NCBI Sequence Viewer
	XP_063453906	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000020276.1
	ENSPPAP00000020285.1
	ENSPPAP00000020290.1

RefSeq Acc Id:	XP_034796972 ⟸ XM_034941081
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9ASG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034796974 ⟸ XM_034941083
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9ASG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034796977 ⟸ XM_034941086
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9ASG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034796976 ⟸ XM_034941085
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9ASG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034796978 ⟸ XM_034941087
- Peptide Label:	isoform X5
- UniProtKB:	A0A2R9ASG3 (UniProtKB/TrEMBL)

Protein Domains

Fanconi anaemia group A protein C-terminal Fanconi anaemia group A protein N-terminal

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000033299	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000043068.1	UniProtKB/TrEMBL
	ENSPPAT00000043077.1	UniProtKB/TrEMBL
	ENSPPAT00000043082.1	UniProtKB/TrEMBL
InterPro	FANCA	UniProtKB/TrEMBL
	Fanconi_A_C	UniProtKB/TrEMBL
	Fanconi_A_N	UniProtKB/TrEMBL
NCBI Gene	FANCA	ENTREZGENE
PANTHER	FANCONI ANEMIA GROUP A PROTEIN	UniProtKB/TrEMBL
	PTHR12047	UniProtKB/TrEMBL
Pfam	Fanconi_A	UniProtKB/TrEMBL
	Fanconi_A_N	UniProtKB/TrEMBL
PRINTS	FANCONIAGENE	UniProtKB/TrEMBL
UniProt	A0A2R9ASG3	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9AWV8_PANPA	UniProtKB/TrEMBL
	A0A2R9AWW2_PANPA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-05-15	FANCA	FA complementation group A		Fanconi anemia complementation group A	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM