Fanca (FA complementation group A) - Rat Genome Database

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Gene: Fanca (FA complementation group A) Chinchilla lanigera
Analyze
Symbol: Fanca
Name: FA complementation group A
RGD ID: 8954574
Description: INVOLVED IN female gonad development (ortholog); male gonad development (ortholog); male meiotic nuclear division (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adenoid cystic carcinoma (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); FOUND IN chromatin (ortholog); Fanconi anaemia nuclear complex (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fanconi anemia complementation group A; Fanconi anemia, complementation group A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555413,273,022 - 3,320,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555413,272,936 - 3,320,229 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fanca
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555413,273,022 - 3,320,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555413,272,936 - 3,320,229 (-)NCBIChiLan1.0ChiLan1.0
FANCA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381689,737,549 - 89,816,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1689,726,683 - 89,816,977 (-)EnsemblGRCh38hg38GRCh38
GRCh371689,803,957 - 89,883,055 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361688,331,460 - 88,410,566 (-)NCBINCBI36Build 36hg18NCBI36
Build 341688,331,459 - 88,410,555NCBI
Celera1674,868,202 - 74,947,293 (-)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1675,499,171 - 75,578,023 (-)NCBIHuRef
CHM1_11691,215,162 - 91,294,341 (-)NCBICHM1_1
T2T-CHM13v2.01695,822,301 - 95,901,198 (-)NCBIT2T-CHM13v2.0
Fanca
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,993,033 - 124,045,390 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,995,039 - 124,045,315 (-)EnsemblGRCm39 Ensembl
GRCm388123,266,294 - 123,318,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,268,300 - 123,318,576 (-)EnsemblGRCm38mm10GRCm38
MGSCv378125,792,144 - 125,842,476 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,154,390 - 126,204,666 (-)NCBIMGSCv36mm8
Celera8127,507,685 - 127,559,921 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.1NCBI
Fanca
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,210,562 - 68,271,080 (-)NCBIGRCr8
mRatBN7.21951,304,126 - 51,362,586 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,304,021 - 51,362,527 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,099,010 - 58,156,795 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,779,050 - 58,837,262 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,997,616 - 61,055,403 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,067,548 - 56,126,075 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,067,548 - 56,126,063 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01967,115,679 - 67,132,939 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01966,772,525 - 66,837,134 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,587,849 - 53,647,780 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11953,592,974 - 53,652,636 (-)NCBI
Celera1950,539,880 - 50,598,370 (-)NCBICelera
Cytogenetic Map19q12NCBI
FANCA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21899,585,370 - 99,668,686 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116105,473,180 - 105,555,774 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01670,495,310 - 70,579,275 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11690,162,900 - 90,245,190 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1690,163,950 - 90,245,147 (-)Ensemblpanpan1.1panPan2
FANCA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,778,149 - 63,838,869 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl563,778,212 - 63,838,823 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha563,791,001 - 63,853,152 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0564,006,193 - 64,068,100 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl564,006,249 - 64,066,477 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1564,026,242 - 64,086,986 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0563,863,551 - 63,925,841 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0564,270,126 - 64,332,344 (+)NCBIUU_Cfam_GSD_1.0
Fanca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,527,532 - 24,567,237 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936641281,073 - 324,053 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936641281,119 - 319,796 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FANCA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6253,207 - 300,152 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16253,207 - 300,159 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26378,761 - 425,687 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FANCA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1575,073,161 - 75,149,110 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl575,073,358 - 75,148,591 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666047286,358 - 422,323 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fanca
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746215,193 - 252,569 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746206,069 - 253,473 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000000965   ⟹   ENSCLAP00000000928
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555413,273,022 - 3,320,052 (-)Ensembl
RefSeq Acc Id: XM_005411060   ⟹   XP_005411117
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,272,936 - 3,320,229 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005411062   ⟹   XP_005411119
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,272,936 - 3,320,229 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507950   ⟹   XP_013363404
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,272,936 - 3,320,229 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507951   ⟹   XP_013363405
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,272,936 - 3,320,229 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507952   ⟹   XP_013363406
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,272,936 - 3,316,928 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507953   ⟹   XP_013363407
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,272,936 - 3,316,957 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507954   ⟹   XP_013363408
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,292,376 - 3,320,229 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001232134
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,285,010 - 3,320,229 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001232135
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,290,006 - 3,320,229 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005411119   ⟸   XM_005411062
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UK59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005411117   ⟸   XM_005411060
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UK59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363405   ⟸   XM_013507951
- Peptide Label: isoform X4
- UniProtKB: A0A8C2UK59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363404   ⟸   XM_013507950
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UK59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363407   ⟸   XM_013507953
- Peptide Label: isoform X5
- UniProtKB: A0A8C2UK59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363406   ⟸   XM_013507952
- Peptide Label: isoform X5
- UniProtKB: A0A8C2UK59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363408   ⟸   XM_013507954
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSCLAP00000000928   ⟸   ENSCLAT00000000965
Protein Domains
Fanconi anaemia group A protein N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000722 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000965 ENTREZGENE
  ENSCLAT00000000965.1 UniProtKB/TrEMBL
InterPro FANCA UniProtKB/TrEMBL
  Fanconi_A_N UniProtKB/TrEMBL
NCBI Gene Fanca ENTREZGENE
PANTHER FANCONI ANEMIA GROUP A PROTEIN UniProtKB/TrEMBL
  PTHR12047 UniProtKB/TrEMBL
Pfam Fanconi_A UniProtKB/TrEMBL
  Fanconi_A_N UniProtKB/TrEMBL
PRINTS FANCONIAGENE UniProtKB/TrEMBL
UniProt A0A8C2UK59 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-15 Fanca  FA complementation group A    Fanconi anemia complementation group A  Symbol and/or name change 5135510 APPROVED
2016-08-16 Fanca  Fanconi anemia complementation group A    Fanconi anemia, complementation group A  Symbol and/or name change 5135510 APPROVED