SNX29 (sorting nexin 29) - Rat Genome Database

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Gene: SNX29 (sorting nexin 29) Pan paniscus
Analyze
Symbol: SNX29
Name: sorting nexin 29
RGD ID: 11686753
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred); ASSOCIATED WITH schizophrenia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100993353; sorting nexin-29
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21812,522,863 - 13,116,752 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11616,293,348 - 16,887,544 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01610,914,851 - 11,508,853 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11612,406,883 - 12,936,191 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1612,366,908 - 12,930,480 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNX29Bonoboschizophrenia  ISOSNX29 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311


Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNX29Bonobophosphatidylinositol binding enablesIEAInterPro:IPR001683 and InterPro:IPR036871150520179 InterProGO_REF:0000002

PMID:22301074  



SNX29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21812,522,863 - 13,116,752 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11616,293,348 - 16,887,544 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01610,914,851 - 11,508,853 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11612,406,883 - 12,936,191 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1612,366,908 - 12,930,480 (+)Ensemblpanpan1.1panPan2
SNX29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381611,976,734 - 12,574,287 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1611,976,734 - 12,574,287 (+)EnsemblGRCh38hg38GRCh38
GRCh371612,070,591 - 12,668,144 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361612,053,556 - 12,575,647 (+)NCBINCBI36Build 36hg18NCBI36
Build 341611,978,102 - 12,054,642NCBI
Celera1612,320,697 - 12,843,213 (+)NCBICelera
Cytogenetic Map16p13.13-p13.12NCBI
HuRef1611,986,415 - 12,585,152 (+)NCBIHuRef
CHM1_11612,070,651 - 12,668,086 (+)NCBICHM1_1
T2T-CHM13v2.01612,012,847 - 12,611,331 (+)NCBIT2T-CHM13v2.0
Snx29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391611,140,719 - 11,576,959 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1611,140,772 - 11,573,336 (+)EnsemblGRCm39 Ensembl
GRCm381611,322,861 - 11,759,095 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1611,322,908 - 11,755,472 (+)EnsemblGRCm38mm10GRCm38
MGSCv371611,405,741 - 11,755,565 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361611,319,226 - 11,669,050 (+)NCBIMGSCv36mm8
Celera1612,036,249 - 12,386,189 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map166.46NCBI
Snx29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8104,391,866 - 4,805,682 (-)NCBIGRCr8
mRatBN7.2103,884,880 - 4,298,699 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl103,888,301 - 4,298,655 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx108,584,989 - 8,995,316 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0108,407,069 - 8,516,409 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0103,747,428 - 4,154,657 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0103,838,444 - 4,249,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl103,840,622 - 4,249,739 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0102,706,984 - 3,115,798 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4103,765,525 - 4,114,661 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera102,920,618 - 3,322,387 (-)NCBICelera
Cytogenetic Map10q11NCBI
Snx29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554426,099,356 - 6,607,285 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554426,082,362 - 6,607,440 (-)NCBIChiLan1.0ChiLan1.0
SNX29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1630,314,165 - 30,822,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl630,318,366 - 30,822,230 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha631,683,735 - 32,218,323 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0630,486,660 - 31,015,641 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl630,489,648 - 31,015,633 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1630,301,320 - 30,829,702 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0630,176,220 - 30,704,361 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0630,598,943 - 31,127,625 (-)NCBIUU_Cfam_GSD_1.0
Snx29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,835,111 - 113,190,458 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501933,066 - 1,285,235 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501933,000 - 1,288,318 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl330,584,951 - 31,133,317 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1330,584,707 - 31,133,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2331,471,464 - 31,614,167 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1511,448,178 - 12,078,346 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl511,448,195 - 12,031,613 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606818,033,408 - 18,685,992 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247825,787,419 - 6,326,363 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247825,788,325 - 6,326,476 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSPPAT00000052541   ⟹   ENSPPAP00000029690
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1612,366,908 - 12,930,480 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000052544   ⟹   ENSPPAP00000029693
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1612,367,176 - 12,930,480 (+)Ensembl
RefSeq Acc Id: XM_034939805   ⟹   XP_034795696
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21812,522,863 - 13,116,752 (+)NCBI
NHGRI_mPanPan11616,293,348 - 16,887,544 (+)NCBI
Mhudiblu_PPA_v01610,914,940 - 11,508,853 (+)NCBI
RefSeq Acc Id: XM_034939806   ⟹   XP_034795697
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21812,522,868 - 12,996,459 (+)NCBI
NHGRI_mPanPan11616,293,359 - 16,763,497 (+)NCBI
Mhudiblu_PPA_v01610,914,940 - 11,385,072 (+)NCBI
RefSeq Acc Id: XM_055099501   ⟹   XP_054955476
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21812,522,912 - 13,116,752 (+)NCBI
NHGRI_mPanPan11616,293,392 - 16,887,544 (+)NCBI
RefSeq Acc Id: XM_063598376   ⟹   XP_063454446
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21812,522,868 - 12,820,892 (+)NCBI
RefSeq Acc Id: XR_010110475
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21812,522,868 - 12,898,274 (+)NCBI
Protein RefSeqs XP_034795696 (Get FASTA)   NCBI Sequence Viewer  
  XP_034795697 (Get FASTA)   NCBI Sequence Viewer  
  XP_054955476 (Get FASTA)   NCBI Sequence Viewer  
  XP_063454446 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029690.1
  ENSPPAP00000029693.1
RefSeq Acc Id: XP_034795696   ⟸   XM_034939805
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BJ32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034795697   ⟸   XM_034939806
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BJ32 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000029693   ⟸   ENSPPAT00000052544
Ensembl Acc Id: ENSPPAP00000029690   ⟸   ENSPPAT00000052541
RefSeq Acc Id: XP_054955476   ⟸   XM_055099501
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BJZ4 (UniProtKB/TrEMBL)
PX   RUN



1 to 24 of 24 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSPPAG00000037848 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052541.1 UniProtKB/TrEMBL
  ENSPPAT00000052544.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.900 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro PX_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  Run_dom UniProtKB/TrEMBL
  Run_dom_sf UniProtKB/TrEMBL
  RUN_SNX29 UniProtKB/TrEMBL
  SNX29_PX UniProtKB/TrEMBL
NCBI Gene LOC100993353 ENTREZGENE
PANTHER SORTING NEXIN-29 UniProtKB/TrEMBL
  SORTING NEXIN-29-RELATED UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
SMART RUN UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF140741 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A2R9BJ32 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BJZ4 ENTREZGENE, UniProtKB/TrEMBL
1 to 24 of 24 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 SNX29  sorting nexin 29  LOC100993353  sorting nexin-29  Symbol and/or name change 5135510 APPROVED