Snx29 (sorting nexin 29) - Rat Genome Database

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Gene: Snx29 (sorting nexin 29) Heterocephalus glaber
Analyze
Symbol: Snx29
Name: sorting nexin 29
RGD ID: 18932203
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred); ASSOCIATED WITH genetic disease (ortholog); schizophrenia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorting nexin-29
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247825,787,419 - 6,326,363 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247825,788,325 - 6,326,476 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Snx29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247825,787,419 - 6,326,363 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247825,788,325 - 6,326,476 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNX29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381611,976,734 - 12,574,287 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1611,976,734 - 12,574,287 (+)EnsemblGRCh38hg38GRCh38
GRCh371612,070,591 - 12,668,144 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361612,053,556 - 12,575,647 (+)NCBINCBI36Build 36hg18NCBI36
Build 341611,978,102 - 12,054,642NCBI
Celera1612,320,697 - 12,843,213 (+)NCBICelera
Cytogenetic Map16p13.13-p13.12NCBI
HuRef1611,986,415 - 12,585,152 (+)NCBIHuRef
CHM1_11612,070,651 - 12,668,086 (+)NCBICHM1_1
T2T-CHM13v2.01612,012,847 - 12,611,331 (+)NCBIT2T-CHM13v2.0
Snx29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391611,140,719 - 11,576,959 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1611,140,772 - 11,573,336 (+)EnsemblGRCm39 Ensembl
GRCm381611,322,861 - 11,759,095 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1611,322,908 - 11,755,472 (+)EnsemblGRCm38mm10GRCm38
MGSCv371611,405,741 - 11,755,565 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361611,319,226 - 11,669,050 (+)NCBIMGSCv36mm8
Celera1612,036,249 - 12,386,189 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map166.46NCBI
Snx29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8104,391,866 - 4,805,682 (-)NCBIGRCr8
mRatBN7.2103,884,880 - 4,298,699 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl103,888,301 - 4,298,655 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx108,584,989 - 8,995,316 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0108,407,069 - 8,516,409 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0103,747,428 - 4,154,657 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0103,838,444 - 4,249,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl103,840,622 - 4,249,739 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0102,706,984 - 3,115,798 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4103,765,525 - 4,114,661 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera102,920,618 - 3,322,387 (-)NCBICelera
Cytogenetic Map10q11NCBI
Snx29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554426,099,356 - 6,607,285 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554426,082,362 - 6,607,440 (-)NCBIChiLan1.0ChiLan1.0
SNX29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21812,522,863 - 13,116,752 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11616,293,348 - 16,887,544 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01610,914,851 - 11,508,853 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11612,406,883 - 12,936,191 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1612,366,908 - 12,930,480 (+)Ensemblpanpan1.1panPan2
SNX29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1630,314,165 - 30,822,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl630,318,366 - 30,822,230 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha631,683,735 - 32,218,323 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0630,486,660 - 31,015,641 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl630,489,648 - 31,015,633 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1630,301,320 - 30,829,702 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0630,176,220 - 30,704,361 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0630,598,943 - 31,127,625 (-)NCBIUU_Cfam_GSD_1.0
Snx29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,835,111 - 113,190,458 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501933,066 - 1,285,235 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501933,000 - 1,288,318 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl330,584,951 - 31,133,317 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1330,584,707 - 31,133,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2331,471,464 - 31,614,167 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1511,448,178 - 12,078,346 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl511,448,195 - 12,031,613 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606818,033,408 - 18,685,992 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004855855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013076387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013076388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013076390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01059394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01005967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000017359   ⟹   ENSHGLP00000017186
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247825,787,419 - 6,326,363 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000017360   ⟹   ENSHGLP00000017187
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247825,792,025 - 6,251,797 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000017361   ⟹   ENSHGLP00000017188
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247825,950,101 - 6,278,555 (-)Ensembl
RefSeq Acc Id: XM_004855855   ⟹   XP_004855912
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247825,788,325 - 6,326,365 (-)NCBI
RefSeq Acc Id: XM_013076387   ⟹   XP_012931841
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247825,788,325 - 6,326,406 (-)NCBI
RefSeq Acc Id: XM_013076388   ⟹   XP_012931842
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247825,788,325 - 6,278,290 (-)NCBI
RefSeq Acc Id: XM_013076390   ⟹   XP_012931844
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247825,788,325 - 6,280,167 (-)NCBI
RefSeq Acc Id: XM_021237246   ⟹   XP_021092905
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247825,788,325 - 6,283,506 (-)NCBI
RefSeq Acc Id: XM_021237247   ⟹   XP_021092906
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247825,788,325 - 6,306,905 (-)NCBI
RefSeq Acc Id: XM_021237248   ⟹   XP_021092907
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247825,788,325 - 6,277,951 (-)NCBI
RefSeq Acc Id: XM_021237249   ⟹   XP_021092908
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247825,788,325 - 6,326,476 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021092908   ⟸   XM_021237249
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J003 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931841   ⟸   XM_013076387
- Peptide Label: isoform X4
- UniProtKB: A0A0P6J003 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855912   ⟸   XM_004855855
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J003 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092906   ⟸   XM_021237247
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J003 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092905   ⟸   XM_021237246
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J003 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931844   ⟸   XM_013076390
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J003 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931842   ⟸   XM_013076388
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J003 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092907   ⟸   XM_021237248
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J003 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000017186   ⟸   ENSHGLT00000017359
RefSeq Acc Id: ENSHGLP00000017187   ⟸   ENSHGLT00000017360
RefSeq Acc Id: ENSHGLP00000017188   ⟸   ENSHGLT00000017361


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012310 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017359 ENTREZGENE
Gene3D-CATH 1.20.58.900 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro PX_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  Run_dom UniProtKB/TrEMBL
  Run_dom_sf UniProtKB/TrEMBL
  RUN_SNX29 UniProtKB/TrEMBL
  SNX29_PX UniProtKB/TrEMBL
NCBI Gene Snx29 ENTREZGENE
PANTHER SORTING NEXIN-29 UniProtKB/TrEMBL
  SORTING NEXIN-29-RELATED UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
SMART RUN UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF140741 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A0P6J003 ENTREZGENE, UniProtKB/TrEMBL