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Gene: Snx29 (sorting nexin 29) Ictidomys tridecemlineatus

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Symbol:

Snx29

Name:

sorting nexin 29

RGD ID:

12661581

Description:

ENCODES a protein that exhibits phosphatidylinositol binding (inferred); ASSOCIATED WITH schizophrenia (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sorting nexin-29

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX29 (sorting nexin 29)	NCBI	Ortholog
Mus musculus (house mouse):	Snx29 (sorting nexin 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Snx29 (sorting nexin 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Snx29 (sorting nexin 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX29 (sorting nexin 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNX29 (sorting nexin 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX29 (sorting nexin 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNX29 (sorting nexin 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx29 (sorting nexin 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	112,835,111 - 113,190,458 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	933,066 - 1,285,235 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	933,000 - 1,288,318 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx29	Squirrel	schizophrenia		ISO	SNX29 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106 and PMID:30208311

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx29	Squirrel	phosphatidylinositol binding	enables	IEA	InterPro:IPR001683 and InterPro:IPR036871	150520179		InterPro	GO_REF:0000002

PMID:22301074

Snx29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	112,835,111 - 113,190,458 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	933,066 - 1,285,235 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	933,000 - 1,288,318 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX29
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	11,976,734 - 12,574,287 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	11,976,734 - 12,574,287 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	12,070,591 - 12,668,144 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	12,053,556 - 12,575,647 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	11,978,102 - 12,054,642	NCBI
Celera	16	12,320,697 - 12,843,213 (+)	NCBI		Celera
Cytogenetic Map	16	p13.13-p13.12	NCBI
HuRef	16	11,986,415 - 12,585,152 (+)	NCBI		HuRef
CHM1_1	16	12,070,651 - 12,668,086 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	12,012,847 - 12,611,331 (+)	NCBI		T2T-CHM13v2.0

Snx29
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	11,140,719 - 11,576,959 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	11,140,772 - 11,573,336 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	11,322,861 - 11,759,095 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	11,322,908 - 11,755,472 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	11,405,741 - 11,755,565 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	11,319,226 - 11,669,050 (+)	NCBI		MGSCv36	mm8
Celera	16	12,036,249 - 12,386,189 (+)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	6.46	NCBI

Snx29
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	4,391,866 - 4,805,682 (-)	NCBI		GRCr8
mRatBN7.2	10	3,884,880 - 4,298,699 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	3,888,301 - 4,298,655 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	8,584,989 - 8,995,316 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	8,407,069 - 8,516,409 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	3,747,428 - 4,154,657 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	3,838,444 - 4,249,741 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	3,840,622 - 4,249,739 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	2,706,984 - 3,115,798 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	3,765,525 - 4,114,661 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	2,920,618 - 3,322,387 (-)	NCBI		Celera
Cytogenetic Map	10	q11	NCBI

Snx29
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	6,099,356 - 6,607,285 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	6,082,362 - 6,607,440 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX29
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	12,522,863 - 13,116,752 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	16,293,348 - 16,887,544 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	10,914,851 - 11,508,853 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	12,406,883 - 12,936,191 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	12,366,908 - 12,930,480 (+)	Ensembl	panpan1.1		panPan2

SNX29
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	30,314,165 - 30,822,176 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	30,318,366 - 30,822,230 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	31,683,735 - 32,218,323 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	30,486,660 - 31,015,641 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	30,489,648 - 31,015,633 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	30,301,320 - 30,829,702 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	30,176,220 - 30,704,361 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	30,598,943 - 31,127,625 (-)	NCBI		UU_Cfam_GSD_1.0

SNX29
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	30,584,951 - 31,133,317 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	30,584,707 - 31,133,392 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	31,471,464 - 31,614,167 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNX29
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	11,448,178 - 12,078,346 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	11,448,195 - 12,031,613 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	18,033,408 - 18,685,992 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snx29
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	5,787,419 - 6,326,363 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624782	5,788,325 - 6,326,476 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_021725531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040277065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040277066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005730422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000020398 ⟹ ENSSTOP00000019084

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936501	933,066 - 1,285,235 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000021281 ⟹ ENSSTOP00000017200

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936501	982,402 - 1,285,235 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000041842 ⟹ ENSSTOP00000025375

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936501	990,820 - 1,215,424 (+)	Ensembl

RefSeq Acc Id:

XM_021725531 ⟹ XP_021581206

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	112,835,113 - 113,190,458 (+)	NCBI
SpeTri2.0	NW_004936501	933,000 - 1,288,318 (+)	NCBI

Sequence:

show sequence

ATGTCAGAGGATTTATTAGAAGGCCAATATCAAACAGAACTAATTAAACCTCATTGCATTTTAGGATCACAGAACAATGACAAAAGACAGTTTCTGCTGGAGAGACTGCTGGATGCAGTAAAACAGTG
CCAGATCCGCTTTGGAGGGAGAAAGGAGATCGCCTCCGATTCCGACAGCAGGGTTACCTGCCTCTGCGCCCAGCTGGAAGCCGTCCTGCAGCATGGCTTGAAGAGGAGCCGAGGATTGGCGCTCACAG
CGGCGGCGATCAAACAGGCAGCAGGCTTCGCCAGCAAGACGGAGACAGAGCCCGTGTTCTGGCACTACGTGAAGGAGGTCCTCAACAGGCACGAGCTGCAGCGCTTCCACTCCCTGCGCCACATCACC
TCTGATGTGGGCCGGGGCCGCGCCTGGCTGCGCTGCGCCCTCAACGAGCACTCGCTGGAGCGCTACCTGCACATGCTGCTCGCCGACCAGGGCAGGCTCAGCACTTTTTATGAAGACTGGTCTTTTGT
GATGGATGAAGAAAGGTCTAGCATGCTTCCCACCATGGCAGCTGGGCTGAACTCCATACTCTTCGCAATTAACATCGACAACAAGGACTTAAATGGGCAGAGCAAATTTGCTCCCACTGTCTCCGACC
TCTTAAAGGAATCAACGCAGAACGTGACCTCCTTGCTGAAGGAATCCACTCAGGGAGTGAGCAGCCTCCTCAGGGAGATCACAGCCTCCTCTGCTGTCTCCATCCTCATTAAGCCCGAGCAGGAGACT
GACCCGCTGCCTGTTGTGTCCAAGAACGTCAGTGCTGATGCCAGATGTAAAAAGGAACGGAAGAAGAAAAAGAAGGTGACCAACATCATCTCATTTGATGAGGAGGAGGATGAGCAGACCTCTGGGGA
TGTTTTTAAAAAGCTTCCTGGGACAGGGGAGAGCTCGGAGGAGAACTCCGACCGGTCCTCGGTCAACATCATGTCGGCCTTTGAAAGCCCCTTTGGGCCGAATTCCAACGGCAGCCAGAGCAGCAGCT
CCTGGAAAGTGGACTCCCTTTCTCTAAATGGGGAGCTTGGGTACCAGAAGCTCGATGTGAAGAGCATCGACGACGAAGGCGTGGATGACAACGAGGACGACGCGTATGTGGACCCATCAGGAAGGAAG
CGTGCGGGCCACCTGGGATCACCAGAGAAGCCCCTGGATGGGAACACCTGCCTCTCCCAGGTGCACAGCTGGGCTCCGCTGCAGGTGCTCCACGGCGATGCTGATGTCCTCTTCCCAGTCAGCGGAGT
GGGCTCCTACAGCCCTGCAGATCCCCCCCTGGGAAGCCTGGAGAACGGAACAGGACCTGAGGACCACATTCTCCCAGAGCCTGGGCTTCGGTACAGTGTGGACGCCAGCCCTCCAGCCCAAGGAAGTC
CTCTGAGCAGCCTCTTGCCTTCTGCGTCGGTGCCAGAATCCATGACGATTAATGAACTACGACAAGCCATCGTGGCCATGATGAACAGAAAGGATGAGCTGGAAGAAGAGAACAGATCCCTGCGGAAC
CTGCTTGATGGCGAGATGGAACATTCGGCTGCGCTCCGGCAGGAGGTGGACACCTTGAAAAGGAAGGTGACCGAGCAGGAGGAGCGGCACACCATGAAGGTCCAGGCTTTGGCAAGAGAAAACGAGGT
GCTCAAAGTCCAGCTGAAGAAATATGTAGGAGCTGTCCAGATGCTGAAAAGAGAAGGCCCTACAGCTGAAGTTGTGCCAAATCTTTGGAACGTTGATGGCGAAGTTACAGTCCCTGAACAGAAGCCAG
GAGAGGTTGCTGAAGAGCTCGCAAGCTCTTATGAAAGGAAGCTCATTGAGGTGGCAGAGATGCATGGAGAGCTGATCGAGTTCAACGAGCGCCTGCACAGGGCCTTGGTGGCCAAGGAAGCTCTGGTG
TCCCAGATGAGGCAGGAGCTCATCGACCTCCGGGGCCCGGTGCCCGGAGATTTGAGTCAAACATCCGAAGATCAGAGTTTGTCGGATTTTGAAATAACTAACCGGGCGCTGATCAACGTCTGGATCCC
GTCGGTGTTCCTCCGCGGCAAGGCAGCGAATGCATTCCACGTGTATCAGGTCTACATCCGGATAAAGGACGACGAGTGGAACGTCTACCGGAGATACACGGAGTTCCGGAGCCTGCACCACAAGCTGC
AGAGCAGGTTCCCCCAGGTGCGGGCCTACAGCTTCCCACCCAAGAAGGCCATCGGGAACAAGGATGCCAAGTTCGTAGAGGAACGGAGAAAGCAGCTCCAGAGTTACCTGCGCAGCGTCATGAACAAA
GTCATCCAGATGGTGCCCGAGTTTGCTGCCAGCCCCAAGAAGGAGACCCTCACCCAGCTGATGCCCTTCTTTGTTGACATCACCCCTCCCGGAGAGCCCCTGAACAAGAACAGCCGGCCCAAAGCGGC
TTCCCGCTTCCCCAAGCTGTCCCGTGGTCATCCCAGGGAGACGCGCAACGTGGAGCCCCAGAGCGGTGACCTCTGACCTCAGCAGAATCCAGATCCCAGCCACTCTGTCCCTGACTTGGCCACGGCAG
CTGGCCTGACGCTTTGGAGTGATGACCACGTCCACCTGGTCAACCCAGAGAGCACACCTTCCCTGCCGGCCACATGCCACCCTGATTAAACTGGTCAGTCTCAGAGCTGCCAGGCCCCTGTCCTGAGA
GTGCGGCGGTTCCTCGTTGGACAGACTGGCACACCTGGCCACTGCTTGCCAAGGGCAGCACAGCCACCTATTCCTTGCTCGGGCTGGGGTCCCCAGGTGGAATGCACAGTGCCCAGGCTCCACAGGCA
GTCCCCTCGGAAACCACCCAAGCCTCTTTCCCACGAGGGAATTGGCCTCTTTTGAACCTGACCACCTGGCTGTACCCTCTGGACAGACAGAGCTCTGTCACCCTCCATCAGTGGTCACTGGACACCCC
GTGGTATCACTCCTGTGGGCAGACATTCCCGCAGACTGTGAAGGAGCCACTGGTGACATTGAACTTGGGTGCGGCTGCAGGAAGCAGCACCACCCAGGAACCCTGAGGCCACCATGCAGCTCGTCGGG
CTGGGTGTGGGCTCCGCACCTCCAACCCAGGCCTGGCACTGCTGGCCTCAGGTCATGGACCTGGCTTGGGGGACCAGATCCATCTATAAACGGCACCTGAACAGATCATGATTGTTCCCCAAAGACAG
TTTGTGATGCGCCATCTGTCCCCTTTCAGTGGGAATGGAACCCTTGTCCCTCCTGTCACAGGGAGCAGGATGACCAGCGCAGCAGCCCCCTCGGTCCTCCGCATCATGGCACCTCTGCACCGAGGGCA
TGCGCAAGGGCTGGGCTAGAGCGTGTGGCCCTGTGTCCACTGGGCCATCGTGGCCTGCATGGATGACAGGCGAGGGAGGGGTCATGCAAGGCCACCGTGGGCTTGTGCTTGAACCCTCAGTTCATTGG
CTGAAATCTCAATGAGCCACCGGGGTGAGCACAGAGCACTTCCTAAGGAAGCATCACAGAAGATTCCTGTGGCAGGGTCCCCAGTGGGGGCAGGGAAGCCATCAACGTGCCCAGCCGACCAAGAAGCA
GCCAAGGGCTTCGTGGGGCCCTGCTGGCAGCTTGCAGGTGCCAGAACTGCTGCCGTACGTGGCCTCACTGAGCAGAGCAGCCCTGGCCCCTGTGAACAGAGCCCTCGAGGGCAGGGGCTGGCTGCAGG
ACTGTCCACCATCGCCCCTGACCAGGGGTCTACACCGAGATGGCTTCTTCGTCCTGTGTTCCACAGGGTGGACCCTCCTCAGACACCCGATCAGCAGGCAAGGGGTGCACTGGCCTCGCTCTCCCCAG
CACCCCACCAGGAACCTCCTTCAACATTCTGCACATGAAGTTCAGAAAAATCGCCCGAGAGCCACAGTCACCTGTCTGCTTGCCCTTTAATTATTCATGGAAAGTGGGTCCAGCTGTCCACCATGTGA
ATTGTAAGAGGATGTGCCCAGAGGCTACAAGAGACCCATGGTTTGCAGTCTGCCCACCTCTTCTGATCTTGGAAGCCCTGGAATGGCCAGTCATCCCCTCACAGGTGTTCAACGCACATGTGACCCCC
ACTGAACTCTGAGCTTTCGTCGCCTGTTTTTTAAAGGCCCAACACCCCACCTGCCACCTTTCTATCTATCTGGTTGATAACAGAGGCCTACCTGGTGCCAGCCGGACACACGCATAGGAAGGATGACC
ACGGTCCTCCTGGTGGGTCCTGCACAGCACCTGTGGGCTGCGTTTCCTGATGCTGGAATCTGGGGCCCTTGCTTTCTCTCAGTTCTGCATGGGACAATTTGTCACTCTGAGGATGGGGTCACAGCATT
GCAGGCCAGGTTCCTGCTCCACCTGTCTGCAGCCTAGAGACACCAGCTGACCTGTCCCATGAAGGCCAGGCCCTGTTCTCTGGGGTCCCCCTAAACGCCCTCCCACCACTGTCAGCCTCTGGACCCCC
TGGCTCCAGCAGCACCTTCTGGCCTTGGTGTGTGACTGATGGGCCAGACCCTGCCCAAGAAAGCCCTGCCCCACGCGGCAGCCTGGCTGGGGGTGTCCCAGGAGAGCCTCATGCTCACGTCTCAACCC
TAAAGGCAATAACTGTCCCGACAGCTCAGCACTTCACCCTGGACAAGGCCGGGAGACCATGACCTGGCACCCACTTACAAACAAGGTCTTTTGTAATGAACGTTTTTCAAAATATTGTGCGTTACATC
ATAAAGCTAATGTTAAATATTTGCTATTCCGATCAGCTAATCCTGCACAAAGGTAGCACTGTATATTTTATCTAACTTTTCTGTGCCAAAAAGTTCATTTTAATGTTTCTGTAACAGTCTCTTGATTA
TGTTTCTGTAACAAAGCCTCGGCTACTGGATCATAGGAACGAGCTGCACCCTCCGACCCCACAGCTCGCCCCAGTCCTCGAAGGGCTCCGGTTCCCCCATGTGTCTTGCGACAGCCGCGTCTCAATTT
TAGGGGCTCAAAATCCTGTCCCTCAATTATTACAAATTCAACAGGCCTCCCTGGACCTGAAGGTTGTATTAGGAGAGAAATCCACGTTCTCTCAAAGTGGGCCAACCTGTGCCCTGGGGACACCCACT
AGGAGCCGCTGGAGGCCCAGGGCTCTGCTTCTCTCCACTGCCCGTGTCCCACCTGCTTGGAAGCCACTAGCTGACCCATGCAGGCCATCCCCGGGTTCTCTGCCTGGAGAGCGGGGATTCCGAGGGTG
GCAGAGGAACTAACTGGCCTTCCGTCATCTCAGTCACCTAGAAAGGATGGCGTGACCACCGCAGCCTGGGCATGGTGGGTGGGCCTCACCTGAGCACAGACCCTGGGCCCCCCAGCCTGGGCAGAGGT
GACCAGGGCACAGAGTGGGCCTCAGCGGGCAGGCTCCCAACTACCCTCTTACGTTATGGTTTACACGATAGAATTTTTAAACAAAAATGTTTAATTTTCTAAAATCTCTTGTATTAAAATTTTCTTTT
GGAATAAGCTGTGGTAATTTTGTTACAATCTGGTTGATTAAACCTCTTTACAGTGACAAAATAAAAACGGCGACATTTTGTAAGTCA

hide sequence

RefSeq Acc Id:

XM_040277065 ⟹ XP_040132999

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	112,835,113 - 113,190,458 (+)	NCBI

RefSeq Acc Id:

XM_040277066 ⟹ XP_040133000

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	112,835,111 - 113,187,376 (+)	NCBI

RefSeq Acc Id:

XR_005730422

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	112,835,111 - 113,072,685 (+)	NCBI


Protein RefSeqs	XP_021581206	(Get FASTA)	NCBI Sequence Viewer
	XP_040132999	(Get FASTA)	NCBI Sequence Viewer
	XP_040133000	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017200.2
	ENSSTOP00000019084.2
	ENSSTOP00000025375.1
GenBank Protein	KAG3259351	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021581206 ⟸ XM_021725531
- Peptide Label:	isoform X1
- UniProtKB:	I3N3Y8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEDLLEGQYQTELIKPHCILGSQNNDKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQLEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWHYVKEVLNRHELQRFHSLRHIT SDVGRGRAWLRCALNEHSLERYLHMLLADQGRLSTFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTSLLKESTQGVSSLLREITASSAVSILIKPEQET DPLPVVSKNVSADARCKKERKKKKKVTNIISFDEEEDEQTSGDVFKKLPGTGESSEENSDRSSVNIMSAFESPFGPNSNGSQSSSSWKVDSLSLNGELGYQKLDVKSIDDEGVDDNEDDAYVDPSGRK RAGHLGSPEKPLDGNTCLSQVHSWAPLQVLHGDADVLFPVSGVGSYSPADPPLGSLENGTGPEDHILPEPGLRYSVDASPPAQGSPLSSLLPSASVPESMTINELRQAIVAMMNRKDELEEENRSLRN LLDGEMEHSAALRQEVDTLKRKVTEQEERHTMKVQALARENEVLKVQLKKYVGAVQMLKREGPTAEVVPNLWNVDGEVTVPEQKPGEVAEELASSYERKLIEVAEMHGELIEFNERLHRALVAKEALV SQMRQELIDLRGPVPGDLSQTSEDQSLSDFEITNRALINVWIPSVFLRGKAANAFHVYQVYIRIKDDEWNVYRRYTEFRSLHHKLQSRFPQVRAYSFPPKKAIGNKDAKFVEERRKQLQSYLRSVMNK VIQMVPEFAASPKKETLTQLMPFFVDITPPGEPLNKNSRPKAASRFPKLSRGHPRETRNVEPQSGDL hide sequence

RefSeq Acc Id:	XP_040133000 ⟸ XM_040277066
- Peptide Label:	isoform X3
- UniProtKB:	I3N3Y8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040132999 ⟸ XM_040277065
- Peptide Label:	isoform X2
- UniProtKB:	I3N3Y8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000025375 ⟸ ENSSTOT00000041842

Ensembl Acc Id:

ENSSTOP00000017200 ⟸ ENSSTOT00000021281

Protein Domains

PX RUN

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000027341	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000020398.2	UniProtKB/TrEMBL
	ENSSTOT00000021281.2	UniProtKB/TrEMBL
	ENSSTOT00000041842.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.900	UniProtKB/TrEMBL
	3.30.1520.10	UniProtKB/TrEMBL
InterPro	PX_dom	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	Run_dom	UniProtKB/TrEMBL
	Run_dom_sf	UniProtKB/TrEMBL
	RUN_SNX29	UniProtKB/TrEMBL
	SNX29_PX	UniProtKB/TrEMBL
NCBI Gene	Snx29	ENTREZGENE
PANTHER	SORTING NEXIN-29	UniProtKB/TrEMBL
	SORTING NEXIN-29-RELATED	UniProtKB/TrEMBL
Pfam	PF00787	UniProtKB/TrEMBL
	RUN	UniProtKB/TrEMBL
PROSITE	PS50195	UniProtKB/TrEMBL
	RUN	UniProtKB/TrEMBL
SMART	RUN	UniProtKB/TrEMBL
	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	SSF140741	UniProtKB/TrEMBL
	SSF64268	UniProtKB/TrEMBL
UniProt	A0A287CVM3_ICTTR	UniProtKB/TrEMBL
	I3MYK4_ICTTR	UniProtKB/TrEMBL
	I3N3Y8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar