GPC6 (glypican 6) - Rat Genome Database

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Gene: GPC6 (glypican 6) Pan paniscus
Analyze
Symbol: GPC6
Name: glypican 6
RGD ID: 11684740
Description: INVOLVED IN cell migration (inferred); regulation of neurotransmitter receptor localization to postsynaptic specialization membrane (inferred); regulation of signal transduction (inferred); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Congenital Limb Deformities (ortholog); Congenital Micromelic Dysplasia with Dislocation of Radius (ortholog); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glypican-6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21494,764,666 - 95,943,637 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11393,433,119 - 94,612,958 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01374,408,999 - 75,588,065 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11393,556,152 - 94,744,052 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1393,874,849 - 94,739,894 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GPC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21494,764,666 - 95,943,637 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11393,433,119 - 94,612,958 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01374,408,999 - 75,588,065 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11393,556,152 - 94,744,052 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1393,874,849 - 94,739,894 (+)Ensemblpanpan1.1panPan2
GPC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381393,216,529 - 94,408,020 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1393,226,807 - 94,408,020 (+)EnsemblGRCh38hg38GRCh38
GRCh371393,879,060 - 95,060,274 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361392,677,096 - 93,853,948 (+)NCBINCBI36Build 36hg18NCBI36
Build 341392,677,095 - 93,853,948NCBI
Celera1374,727,460 - 75,908,516 (+)NCBICelera
Cytogenetic Map13q31.3-q32.1NCBI
HuRef1374,476,112 - 75,657,237 (+)NCBIHuRef
CHM1_11393,848,682 - 95,029,827 (+)NCBICHM1_1
T2T-CHM13v2.01392,430,763 - 93,611,616 (+)NCBIT2T-CHM13v2.0
Gpc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914117,162,332 - 118,216,941 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14117,162,727 - 118,213,956 (+)EnsemblGRCm39 Ensembl
GRCm3814116,924,920 - 117,979,529 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14116,925,315 - 117,976,544 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714117,324,537 - 118,378,751 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614115,808,387 - 116,859,339 (+)NCBIMGSCv36mm8
Celera14115,484,341 - 116,531,683 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1460.34NCBI
Gpc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815100,437,415 - 101,435,038 (+)NCBIGRCr8
mRatBN7.21594,030,218 - 95,027,883 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1594,029,884 - 95,024,006 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.015102,164,091 - 103,174,721 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15102,164,751 - 103,170,847 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015105,607,785 - 106,611,654 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415101,763,223 - 102,656,127 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1592,888,323 - 93,881,886 (+)NCBICelera
Cytogenetic Map15q24NCBI
Gpc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540415,433,962 - 16,504,351 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540415,429,811 - 16,504,973 (-)NCBIChiLan1.0ChiLan1.0
GPC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12244,154,690 - 45,237,398 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2244,154,944 - 45,233,549 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2244,008,265 - 45,024,162 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02244,583,937 - 45,667,974 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2244,584,263 - 45,667,325 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12244,239,373 - 45,321,705 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02244,280,456 - 45,362,460 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02244,290,207 - 45,372,251 (+)NCBIUU_Cfam_GSD_1.0
Gpc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945179,774,517 - 180,818,680 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647215,137,770 - 16,176,943 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647215,136,656 - 16,177,597 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1162,438,453 - 63,560,897 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11162,436,143 - 63,560,908 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GPC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1372,075,622 - 73,242,678 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604628,496,652 - 29,624,562 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpc6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462487997,257 - 1,192,604 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462487997,125 - 1,196,747 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000052399   ⟹   ENSPPAP00000029548
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1393,874,849 - 94,739,894 (+)Ensembl
RefSeq Acc Id: XM_003832020   ⟹   XP_003832068
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21494,764,690 - 95,943,637 (+)NCBI
NHGRI_mPanPan11393,433,119 - 94,612,958 (+)NCBI
Mhudiblu_PPA_v01374,409,002 - 75,588,065 (+)NCBI
PanPan1.11393,566,132 - 94,744,052 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034936849   ⟹   XP_034792740
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21494,764,666 - 95,943,637 (+)NCBI
NHGRI_mPanPan11393,433,119 - 94,612,569 (+)NCBI
Mhudiblu_PPA_v01374,408,999 - 75,588,065 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003832068 (Get FASTA)   NCBI Sequence Viewer  
  XP_034792740 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029548.1
RefSeq Acc Id: XP_003832068   ⟸   XM_003832020
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BJL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034792740   ⟸   XM_034936849
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BJL7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000029548   ⟸   ENSPPAT00000052399


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037789 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052399.1 UniProtKB/TrEMBL
InterPro Glypican UniProtKB/TrEMBL
  Glypican_CS UniProtKB/TrEMBL
NCBI Gene GPC6 ENTREZGENE
PANTHER PTHR10822 UniProtKB/TrEMBL
  PTHR10822:SF31 UniProtKB/TrEMBL
Pfam Glypican UniProtKB/TrEMBL
PROSITE GLYPICAN UniProtKB/TrEMBL
UniProt A0A2R9BJL7 ENTREZGENE, UniProtKB/TrEMBL