Gpc6 (glypican 6) - Rat Genome Database

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Gene: Gpc6 (glypican 6) Ictidomys tridecemlineatus
Analyze
Symbol: Gpc6
Name: glypican 6
RGD ID: 12484435
Description: INVOLVED IN regulation of neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Congenital Limb Deformities (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glypican-6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945179,774,517 - 180,818,680 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647215,137,770 - 16,176,943 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647215,136,656 - 16,177,597 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gpc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945179,774,517 - 180,818,680 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647215,137,770 - 16,176,943 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647215,136,656 - 16,177,597 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381393,216,529 - 94,408,020 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1393,226,807 - 94,408,020 (+)EnsemblGRCh38hg38GRCh38
GRCh371393,879,060 - 95,060,274 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361392,677,096 - 93,853,948 (+)NCBINCBI36Build 36hg18NCBI36
Build 341392,677,095 - 93,853,948NCBI
Celera1374,727,460 - 75,908,516 (+)NCBICelera
Cytogenetic Map13q31.3-q32.1NCBI
HuRef1374,476,112 - 75,657,237 (+)NCBIHuRef
CHM1_11393,848,682 - 95,029,827 (+)NCBICHM1_1
T2T-CHM13v2.01392,430,763 - 93,611,616 (+)NCBIT2T-CHM13v2.0
Gpc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914117,162,332 - 118,216,941 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14117,162,727 - 118,213,956 (+)EnsemblGRCm39 Ensembl
GRCm3814116,924,920 - 117,979,529 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14116,925,315 - 117,976,544 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714117,324,537 - 118,378,751 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614115,808,387 - 116,859,339 (+)NCBIMGSCv36mm8
Celera14115,484,341 - 116,531,683 (+)NCBICelera
Cytogenetic Map14E4NCBI
Gpc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21594,030,218 - 95,027,883 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1594,029,884 - 95,024,006 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.015102,164,091 - 103,174,721 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15102,164,751 - 103,170,847 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015105,607,785 - 106,611,654 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415101,763,223 - 102,656,127 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1592,888,323 - 93,881,886 (+)NCBICelera
Cytogenetic Map15q24NCBI
Gpc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540415,433,962 - 16,504,351 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540415,429,811 - 16,504,973 (-)NCBIChiLan1.0ChiLan1.0
GPC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11393,556,152 - 94,744,052 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1393,874,849 - 94,739,894 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01374,408,999 - 75,588,065 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
GPC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12244,154,690 - 45,237,398 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2244,154,944 - 45,233,549 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2244,008,265 - 45,024,162 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02244,583,937 - 45,667,974 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2244,584,263 - 45,667,325 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12244,239,373 - 45,321,705 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02244,280,456 - 45,362,460 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02244,290,207 - 45,372,251 (+)NCBIUU_Cfam_GSD_1.0
GPC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1162,438,453 - 63,560,897 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11162,436,143 - 63,560,908 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GPC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1372,075,622 - 73,242,678 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604628,496,652 - 29,624,562 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpc6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462487997,257 - 1,192,604 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462487997,125 - 1,196,747 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000019801   ⟹   ENSSTOP00000014910
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647215,137,770 - 16,176,943 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000028169   ⟹   ENSSTOP00000019428
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647215,137,770 - 16,176,943 (-)Ensembl
RefSeq Acc Id: XM_005317045   ⟹   XP_005317102
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945179,774,517 - 180,818,680 (+)NCBI
SpeTri2.0NW_00493647215,136,656 - 16,177,597 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040281651   ⟹   XP_040137585
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945179,774,517 - 180,818,680 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005317102 (Get FASTA)   NCBI Sequence Viewer  
  XP_040137585 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3293270 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005317102   ⟸   XM_005317045
- Peptide Label: isoform X1
- UniProtKB: I3MS15 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040137585   ⟸   XM_040281651
- Peptide Label: isoform X2
- UniProtKB: I3N4Y2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000019428   ⟸   ENSSTOT00000028169
RefSeq Acc Id: ENSSTOP00000014910   ⟸   ENSSTOT00000019801


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025649 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000014910 ENTREZGENE
  ENSSTOP00000014910.2 UniProtKB/TrEMBL
  ENSSTOP00000019428.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000019801.2 UniProtKB/TrEMBL
  ENSSTOT00000028169.2 UniProtKB/TrEMBL
InterPro Glypican UniProtKB/TrEMBL
  Glypican-6 UniProtKB/TrEMBL
  Glypican_CS UniProtKB/TrEMBL
NCBI Gene Gpc6 ENTREZGENE
PANTHER PTHR10822 UniProtKB/TrEMBL
  PTHR10822:SF31 UniProtKB/TrEMBL
Pfam Glypican UniProtKB/TrEMBL
PROSITE GLYPICAN UniProtKB/TrEMBL
UniProt I3MS15 ENTREZGENE, UniProtKB/TrEMBL
  I3N4Y2 ENTREZGENE, UniProtKB/TrEMBL