Vipr1 (vasoactive intestinal peptide receptor 1) - Rat Genome Database

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Gene: Vipr1 (vasoactive intestinal peptide receptor 1) Mus musculus
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Symbol: Vipr1
Name: vasoactive intestinal peptide receptor 1
RGD ID: 11486
MGI Page MGI
Description: Predicted to enable G protein-coupled peptide receptor activity; peptide hormone binding activity; and vasoactive intestinal polypeptide receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway. Predicted to be part of receptor complex. Predicted to be active in plasma membrane. Is expressed in brain and cerebral cortex. Human ortholog(s) of this gene implicated in achalasia. Orthologous to human VIPR1 (vasoactive intestinal peptide receptor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AV071699; expressed sequence AV071699; PACAP type II receptor; PACAP-R-2; PACAP-R2; pituitary adenylate cyclase-activating polypeptide type II receptor; vasoactive intestinal polypeptide receptor 1; VI; VIP receptor subtype 1; VIP-R-1; VIP-R1; VP; VPAC1; VPAC1 receptor
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,471,782 - 121,502,020 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9121,471,782 - 121,502,020 (+)EnsemblGRCm39 Ensembl
GRCm389121,642,716 - 121,672,954 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,642,716 - 121,672,954 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,551,834 - 121,582,072 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369121,491,414 - 121,519,332 (+)NCBIMGSCv36mm8
Celera9122,116,040 - 122,146,512 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
Vipr1Mouseachalasia onsetISORGD:7356375685626DNA:SNP:intron:rs437876 (human)RGD 
Vipr1MouseCrohn's disease  ISORGD:7356375685618 RGD 
Vipr1MouseExperimental Diabetes Mellitus  IDA 5685622 RGD 
Vipr1Mouseulcerative colitis  ISORGD:7356375685618 RGD 
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Original Reference(s)
Vipr1Mousecongenital muscular dystrophy-dystroglycanopathy type A8  ISORGD:7356378554872ClinVar Annotator: match by term: Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, more ...ClinVarPMID:28492532
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Original Reference(s)
Vipr1MouseExperimental Liver Cirrhosis  ISORGD:73563711554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Vipr1Mousehepatocellular carcinoma  ISORGD:73563711554173CTD Direct Evidence: marker/mechanismCTDPMID:28284560

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Original Reference(s)
Vipr1Mouse(1->4)-beta-D-glucan multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of VIPR1 mRNACTDPMID:36331819
Vipr1Mouse1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Vipr1Mouse1,2-dichloroethane decreases expressionEXP 6480464ethylene dichloride results in decreased expression of VIPR1 mRNACTDPMID:28960355
Vipr1Mouse1,2-dimethylhydrazine multiple interactionsEXP 6480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of VIPR1 mRNACTDPMID:22206623
Vipr1Mouse1-naphthyl isothiocyanate decreases expressionISORGD:396164804641-Naphthylisothiocyanate results in decreased expression of VIPR1 mRNACTDPMID:25380136|PMID:30723492
Vipr1Mouse17beta-estradiol multiple interactionsISORGD:7356376480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of VIPR1 mRNACTDPMID:19619570
Vipr1Mouse17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of VIPR1 mRNACTDPMID:39298647
Vipr1Mouse17beta-estradiol increases expressionISORGD:39616480464Estradiol results in increased expression of VIPR1 mRNACTDPMID:32145629
Vipr1Mouse17beta-estradiol increases expressionISORGD:7356376480464Estradiol results in increased expression of VIPR1 mRNACTDPMID:19619570
Vipr1Mouse2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Vipr1Mouse2,2',5,5'-tetrachlorobiphenyl multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Vipr1Mouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:7356376480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of VIPR1 mRNACTDPMID:19619570
Vipr1Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:7356376480464Tetrachlorodibenzodioxin results in increased expression of VIPR1 mRNACTDPMID:12377990|PMID:19619570|PMID:19901195|PMID:20106945|PMID:21632981|PMID:22903824|PMID:30096437
Vipr1Mouse2,4,4'-trichlorobiphenyl multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Vipr1Mouse2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionEXP 64804642,2',4,4',5-brominated diphenyl ether affects the expression of VIPR1 mRNACTDPMID:38648751
Vipr1Mouse3,4-methylenedioxymethamphetamine increases expressionEXP 6480464N-Methyl-3,4-methylenedioxyamphetamine results in increased expression of VIPR1 mRNACTDPMID:19285098
Vipr1Mouse3-methylcholanthrene multiple interactionsISORGD:7356376480464Methylcholanthrene promotes the reaction [AHR protein binds to VIPR1 promoter]CTDPMID:20348232
Vipr1Mouse4,4'-diaminodiphenylmethane decreases expressionISORGD:396164804644,4'-diaminodiphenylmethane results in decreased expression of VIPR1 mRNACTDPMID:25380136
Vipr1Mouse4-nonylphenol multiple interactionsISORGD:7356376480464[4-tert-octylphenol co-treated with 4-nonylphenol] results in decreased expression of VIPR1 mRNACTDPMID:23626723
Vipr1Mouse4-tert-Octylphenol multiple interactionsISORGD:7356376480464[4-tert-octylphenol co-treated with 4-nonylphenol] results in decreased expression of VIPR1 mRNACTDPMID:23626723

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Biological Process

  
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Original Reference(s)
Vipr1Mouseadenylate cyclase-activating G protein-coupled receptor signaling pathway involved_inISSUniProtKB:P322412290270 UniProtGO_REF:0000024
Vipr1Mouseadenylate cyclase-modulating G protein-coupled receptor signaling pathway involved_inIBAPANTHER:PTN001737881|ZFIN:ZDB-GENE-010406-4|UniProtKB:P34998|MGI:2441720|RGD:2703|MGI:101950|UniProtKB:Q16602|FB:FBgn0260753|UniProtKB:P41586|UniProtKB:P47872|ZFIN:ZDB-GENE-050311-6|UniProtKB:P32241|ZFIN:ZDB-GENE-991123-10|UniProtKB:P47871|UniProtKB:P48546|RGD:2669|WB:WBGene00015735|ZFIN:ZDB-GENE-050315-1|MGI:1352753|UniProtKB:P30988|UniProtKB:Q02643|MGI:99572|RGD:620270|MGI:97801|RGD:621001|ZFIN:ZDB-GENE-050315-2|RGD:3442|UniProtKB:P43220|MGI:88498|MGI:1926944|UniProtKB:P41587|MGI:95710|UniProtKB:Q8WN93|RGD:61276|UniProtKB:Q034312290270 GO_CentralGO_REF:0000033
Vipr1Mousecell surface receptor signaling pathway involved_inIEAInterPro:IPR0179812290270 InterProGO_REF:0000002
Vipr1MouseG protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger involved_inIEAUniProtKB:P32241|ensembl:ENSP000003272462290270 EnsemblGO_REF:0000107

Cellular Component

  
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Original Reference(s)
Vipr1Mouseplasma membrane is_active_inIBAPANTHER:PTN001737881|RGD:3442|UniProtKB:A6QP74|MGI:99572|UniProtKB:Q02643|UniProtKB:P30988|MGI:1352753|FB:FBgn0033744|RGD:2688|UniProtKB:Q03431|MGI:95710|FB:FBgn0052843|UniProtKB:P41587|MGI:88498|UniProtKB:P43220|FB:FBgn0260753|UniProtKB:P41586|UniProtKB:Q16602|FB:FBgn0033932|RGD:2703|UniProtKB:P34998|UniProtKB:Q13324|RGD:2038|WB:WBGene00015735|UniProtKB:P47871|UniProtKB:P322412290270 GO_CentralGO_REF:0000033
Vipr1Mouseplasma membrane located_inIEAUniProtKB-SubCell:SL-00392290270 UniProtGO_REF:0000044
Vipr1Mousereceptor complex part_ofISOUniProtKB:P322412290270 PMID:23382219MGIPMID:23382219

Molecular Function
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Original Reference(s)
Vipr1MouseG protein-coupled peptide receptor activity enablesIBAPANTHER:PTN001737881|RGD:621001|UniProtKB:Q16602|MGI:101950|FB:FBgn0260753|RGD:620270|RGD:2703|UniProtKB:P30988|MGI:99572|RGD:2669|UniProtKB:P47871|UniProtKB:A0A287ABC1|WB:WBGene00015735|UniProtKB:P43220|ZFIN:ZDB-GENE-050516-1|MGI:19269442290270 GO_CentralGO_REF:0000033
Vipr1Mousepeptide hormone binding enablesIBAPANTHER:PTN000244369|UniProtKB:P32241|UniProtKB:P47872|ZFIN:ZDB-GENE-050516-1|UniProtKB:Q03431|RGD:2689|ZFIN:ZDB-GENE-991123-12|RGD:2669|MGI:95710|UniProtKB:P48546|RGD:2703|UniProtKB:Q02643|ZFIN:ZDB-GENE-050516-2|ZFIN:ZDB-GENE-991123-8|RGD:34422290270 GO_CentralGO_REF:0000033
Vipr1Mousepeptide hormone binding enablesIEAUniProtKB:P32241|ensembl:ENSP000003272462290270 EnsemblGO_REF:0000107
Vipr1Mousepituitary adenylate cyclase-activating polypeptide receptor activity enablesIEAUniProtKB:P32241|ensembl:ENSP000003272462290270 EnsemblGO_REF:0000107
Vipr1Mouseprotein binding enablesISOUniProtKB:Q9NQX1-29068941 PMID:32296183IntActPMID:32296183
Vipr1Mouseprotein binding enablesISOUniProtKB:P01282-PRO_00000114609068941 PMID:23597562IntActPMID:23597562
Vipr1Mousevasoactive intestinal polypeptide receptor activity  ISORGD:39619068941 RGDPMID:1314625|REF_RGD_ID:727528
Vipr1Mousevasoactive intestinal polypeptide receptor activity enablesIBAPANTHER:PTN002898408|RGD:3961|UniProtKB:P322412290270 GO_CentralGO_REF:0000033
Vipr1Mousevasoactive intestinal polypeptide receptor activity enablesISORGD:39612290270 GO_CentralGO_REF:0000096
Vipr1Mousevasoactive intestinal polypeptide receptor activity enablesISSUniProtKB:P322412290270 UniProtGO_REF:0000024
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Original Reference(s)
Vipr1Mouseabnormal enterocyte proliferation  IAGP 5509061 MGIPMID:21697765
Vipr1Mouseabnormal exocrine pancreas morphology  IAGP 5509061 MGIPMID:21697765
Vipr1Mouseabnormal gait  IEA 5509061 MGI 
Vipr1Mouseabnormal glucose homeostasis  IAGP 5509061 MGIPMID:21697765
Vipr1Mouseabnormal intestine morphology  IAGP 5509061 MGIPMID:21697765
Vipr1Mouseataxia  IEA 5509061 MGI 
Vipr1Mousedecreased body weight  IAGP 5509061 MGIPMID:21697765
Vipr1Mousedecreased locomotor activity  IEA 5509061 MGI 
Vipr1Mousedisorganized pancreatic islets  IAGP 5509061 MGIPMID:21697765
Vipr1Mouseenlarged cecum  IAGP 5509061 MGIPMID:21697765
Vipr1Mousehunched posture  IEA 5509061 MGI 
Vipr1Mousehypoglycemia  IAGP 5509061 MGIPMID:21697765
Vipr1Mouseimpaired coordination  IEA 5509061 MGI 
Vipr1Mouseimpaired glucose tolerance  IAGP 5509061 MGIPMID:21697765
Vipr1Mouseincreased insulin sensitivity  IAGP 5509061 MGIPMID:21697765
Vipr1Mouseintestinal obstruction  IAGP 5509061 MGIPMID:21697765
Vipr1Mouselethality at weaning, incomplete penetrance  IAGP 5509061 MGIPMID:21697765
Vipr1Mousepostnatal growth retardation  IAGP 5509061 MGIPMID:21697765
Vipr1Mousepreweaning lethality, incomplete penetrance  IAGP 5509061 MGIPMID:21697765
Vipr1Mousesmall intestine hemorrhage  IAGP 5509061 MGIPMID:21697765
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Reference Title
Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Pituitary adenylate cyclase-activating polypeptide and sonic hedgehog interact to control cerebellar granule precursor cell proliferation. Nicot A, etal., J Neurosci 2002 Nov 1;22(21):9244-54.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Age-dependent association of idiopathic achalasia with vasoactive intestinal peptide receptor 1 gene. Paladini F, etal., Neurogastroenterol Motil. 2009 Jun;21(6):597-602. Epub 2009 Feb 27.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Anti-hyperglycemic, antioxidant and anti-inflammatory effects of VIP and a VPAC1 agonist on streptozotocin-induced diabetic mice. Yu R, etal., Peptides. 2011 Feb;32(2):216-22. Epub 2010 Dec 1.
10. Differential expression of vasoactive intestinal peptide receptor 1 expression in inflammatory bowel disease. Yukawa T, etal., Int J Mol Med. 2007 Aug;20(2):161-7.
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PMID:8784257   PMID:8784267   PMID:10331949   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11859927   PMID:12409228   PMID:15632701   PMID:15747579   PMID:16141072  
PMID:16141073   PMID:16301637   PMID:16987237   PMID:17115416   PMID:17401158   PMID:18000164   PMID:18442091   PMID:18616823   PMID:19650041   PMID:20150284   PMID:20449688   PMID:20951679  
PMID:21267068   PMID:21295288   PMID:21677750   PMID:21697765   PMID:21737879   PMID:21873635   PMID:21878358   PMID:22059987   PMID:22669509   PMID:22700375   PMID:22723691   PMID:23382219  
PMID:24952961   PMID:27357191   PMID:27402918   PMID:28727763   PMID:30407703   PMID:32325033   PMID:36150396   PMID:36152627   PMID:36328148  



Vipr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,471,782 - 121,502,020 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9121,471,782 - 121,502,020 (+)EnsemblGRCm39 Ensembl
GRCm389121,642,716 - 121,672,954 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,642,716 - 121,672,954 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,551,834 - 121,582,072 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369121,491,414 - 121,519,332 (+)NCBIMGSCv36mm8
Celera9122,116,040 - 122,146,512 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.5NCBI
VIPR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38342,489,299 - 42,537,568 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl342,489,299 - 42,537,573 (+)EnsemblGRCh38hg38GRCh38
GRCh37342,530,791 - 42,579,060 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,519,121 - 42,554,064 (+)NCBINCBI36Build 36hg18NCBI36
Build 34342,519,120 - 42,554,064NCBI
Celera342,484,508 - 42,519,469 (+)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef342,574,992 - 42,623,180 (+)NCBIHuRef
CHM1_1342,481,967 - 42,530,261 (+)NCBICHM1_1
T2T-CHM13v2.0342,507,314 - 42,555,561 (+)NCBIT2T-CHM13v2.0
Vipr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88130,181,219 - 130,217,098 (+)NCBIGRCr8
mRatBN7.28121,303,739 - 121,339,587 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8121,310,248 - 121,339,585 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8126,909,204 - 126,938,516 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08125,108,275 - 125,137,587 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08122,937,779 - 122,967,104 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08130,283,453 - 130,313,431 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08129,467,937 - 129,496,866 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8120,444,918 - 120,474,479 (+)NCBICelera
Cytogenetic Map8q32NCBI
Vipr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,234,153 - 28,253,168 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,234,590 - 28,253,146 (-)NCBIChiLan1.0ChiLan1.0
VIPR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2242,464,670 - 42,503,777 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1342,469,438 - 42,504,483 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0342,407,591 - 42,442,565 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1342,669,338 - 42,705,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl342,670,195 - 42,705,170 (+)Ensemblpanpan1.1panPan2
VIPR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12311,635,809 - 11,666,926 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2311,635,394 - 11,666,936 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2311,609,898 - 11,641,322 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02311,924,939 - 11,956,370 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2311,924,529 - 11,957,534 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12311,726,543 - 11,757,961 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02311,868,801 - 11,900,208 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02311,873,062 - 11,904,503 (+)NCBIUU_Cfam_GSD_1.0
Vipr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118200,208,554 - 200,255,619 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366952,564,890 - 2,607,676 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366952,564,917 - 2,597,009 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VIPR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,036,629 - 26,075,691 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,036,610 - 26,073,168 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,704,211 - 28,740,358 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VIPR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1223,950,129 - 3,984,849 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl223,950,193 - 3,984,948 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041163,214,473 - 163,249,573 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vipr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473077,128,649 - 77,153,750 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473077,128,547 - 77,155,531 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Vipr1
1143 total Variants

Predicted Target Of
Summary Value
Count of predictions:2175
Count of miRNA genes:768
Interacting mature miRNAs:1030
Transcripts:ENSMUST00000035115, ENSMUST00000129394, ENSMUST00000139189, ENSMUST00000149959
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 26 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse

1 to 10 of 26 rows
AV071699  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389121,672,787 - 121,672,875UniSTSGRCm38
MGSCv379121,581,905 - 121,581,993UniSTSGRCm37
Celera9122,146,345 - 122,146,433UniSTS
Cytogenetic Map9F4UniSTS
cM Map972.5UniSTS
Whitehead/MRC_RH91226.11UniSTS
Vipr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F4UniSTS
cM Map972.5UniSTS
Vipr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F4UniSTS







Ensembl Acc Id: ENSMUST00000035115   ⟹   ENSMUSP00000035115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,471,782 - 121,502,020 (+)Ensembl
GRCm38.p6 Ensembl9121,642,716 - 121,672,954 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129394
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,493,681 - 121,494,973 (+)Ensembl
GRCm38.p6 Ensembl9121,664,615 - 121,665,907 (+)Ensembl
Ensembl Acc Id: ENSMUST00000139189
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,472,117 - 121,489,291 (+)Ensembl
GRCm38.p6 Ensembl9121,643,051 - 121,660,225 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149959
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,497,779 - 121,498,575 (+)Ensembl
GRCm38.p6 Ensembl9121,668,713 - 121,669,509 (+)Ensembl
Ensembl Acc Id: ENSMUST00000213272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,471,827 - 121,486,669 (+)Ensembl
GRCm38.p6 Ensembl9121,642,761 - 121,657,603 (+)Ensembl
RefSeq Acc Id: NM_011703   ⟹   NP_035833
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,471,782 - 121,502,020 (+)NCBI
GRCm389121,642,716 - 121,672,954 (+)ENTREZGENE
MGSCv379121,551,834 - 121,582,072 (+)RGD
Celera9122,116,040 - 122,146,512 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006512068   ⟹   XP_006512131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,471,795 - 121,502,013 (+)NCBI
GRCm389121,642,729 - 121,672,947 (+)NCBI
Sequence:
1 to 11 of 11 rows
Protein RefSeqs NP_035833 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512131 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF77053 (Get FASTA)   NCBI Sequence Viewer  
  AAN86759 (Get FASTA)   NCBI Sequence Viewer  
  BAA81896 (Get FASTA)   NCBI Sequence Viewer  
  BAC35004 (Get FASTA)   NCBI Sequence Viewer  
  BAE22271 (Get FASTA)   NCBI Sequence Viewer  
  EDL09145 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000035115
  ENSMUSP00000035115.5
GenBank Protein P97751 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_035833   ⟸   NM_011703
- Peptide Label: precursor
- UniProtKB: Q9JI40 (UniProtKB/Swiss-Prot),   Q9R1T8 (UniProtKB/Swiss-Prot),   P97751 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512131   ⟸   XM_006512068
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000035115   ⟸   ENSMUST00000035115

Name Modeler Protein Id AA Range Protein Structure
AF-P97751-F1-model_v2 AlphaFold P97751 1-459 view protein structure

RGD ID:8671254
Promoter ID:EPDNEW_M13658
Type:initiation region
Name:Vipr1_1
Description:Mus musculus vasoactive intestinal peptide receptor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389121,642,777 - 121,642,837EPDNEW


1 to 38 of 38 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000032528 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000035115 ENTREZGENE
  ENSMUST00000035115.5 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.1240.10 UniProtKB/Swiss-Prot
  Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GPCR_2 UniProtKB/Swiss-Prot
  GPCR_2-like UniProtKB/Swiss-Prot
  GPCR_2_extracell_dom_sf UniProtKB/Swiss-Prot
  GPCR_2_extracellular_dom UniProtKB/Swiss-Prot
  GPCR_2_secretin-like UniProtKB/Swiss-Prot
  GPCR_2_secretin-like_CS UniProtKB/Swiss-Prot
  GPCR_2_VIP_rcpt UniProtKB/Swiss-Prot
  GPCR_2_VIP_rcpt_1 UniProtKB/Swiss-Prot
KEGG Report mmu:22354 UniProtKB/Swiss-Prot
MGD MGI:109272 ENTREZGENE
NCBI Gene 22354 ENTREZGENE
PANTHER PDF RECEPTOR-LIKE PROTEIN-RELATED UniProtKB/Swiss-Prot
  VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR 1 UniProtKB/Swiss-Prot
Pfam 7tm_2 UniProtKB/Swiss-Prot
  HRM UniProtKB/Swiss-Prot
PhenoGen Vipr1 PhenoGen
PRINTS GPCRSECRETIN UniProtKB/Swiss-Prot
  VASOACTVEIPR UniProtKB/Swiss-Prot
  VIP1RECEPTOR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F2_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F2_2 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F2_3 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F2_4 UniProtKB/Swiss-Prot
SMART HormR UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
  SSF111418 UniProtKB/Swiss-Prot
UniProt P97751 ENTREZGENE
  Q3UYE1_MOUSE UniProtKB/TrEMBL
  Q9JI40 ENTREZGENE
  Q9R1T8 ENTREZGENE
  VIPR1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9JI40 UniProtKB/Swiss-Prot
  Q9R1T8 UniProtKB/Swiss-Prot
1 to 38 of 38 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Vipr1  vasoactive intestinal peptide receptor 1  AV071699  expressed sequence AV071699  Data merged from RGD:1613329 737654 PROVISIONAL