Advanced Search (OLGA)

Gene: Crybb1 (crystallin, beta B1) Mus musculus

Subscribe to Updates

Analyze

Symbol:

Crybb1

Name:

crystallin, beta B1

RGD ID:

10401

MGI Page

MGI

Description:

Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye; head; lens; and lens fiber. Human ortholog(s) of this gene implicated in cataract and cataract 17 multiple types. Orthologous to human CRYBB1 (crystallin beta B1).

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

3110006K12Rik; BB1CRY; beta-B1 crystallin; beta-crystallin B1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CRYBB1 (crystallin beta B1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Rattus norvegicus (Norway rat):	Crybb1 (crystallin, beta B1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Crybb1 (crystallin beta B1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CRYBB1 (crystallin beta B1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CRYBB1 (crystallin beta B1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Crybb1 (crystallin beta B1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CRYBB1 (crystallin beta B1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CRYBB1 (crystallin beta B1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Crybb1 (crystallin beta B1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CRYBB3 (crystallin beta B3)	HGNC	OrthoDB
Homo sapiens (human):	CRYBB2 (crystallin beta B2)	HGNC	OrthoDB
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Crybb1 (crystallin, beta B1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CRYBB1 (crystallin beta B1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	crybb1 (crystallin, beta B1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Xenopus tropicalis (tropical clawed frog):	crybb1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	112,403,686 - 112,417,451 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	112,403,681 - 112,417,451 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	112,254,563 - 112,269,585 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	112,255,815 - 112,269,585 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	112,684,841 - 112,698,602 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	112,496,124 - 112,509,885 (+)	NCBI		MGSCv36	mm8
Celera	5	109,375,405 - 109,389,151 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	54.63	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Crybb1	Mouse	cataract		ISO	CRYBB1 (Homo sapiens)	728217	DNA:nonsense mutation:cds:p.G220X (human)	RGD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Crybb1	Mouse	cataract		ISO	CRYBB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital cataract	ClinVar	PMID:25741868 more ...
Crybb1	Mouse	cataract 17 multiple types		ISO	CRYBB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Cataract 17 multiple types	ClinVar	PMID:12360425 more ...
Crybb1	Mouse	cataract 23		ISO	CRYBB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Cataract 23	ClinVar	PMID:28492532
Crybb1	Mouse	genetic disease		ISO	CRYBB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:28492532 and PMID:36980880
Crybb1	Mouse	schizophrenia		ISO	CRYBB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Crybb1	Mouse	cataract		ISO	CRYBB1 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:12360425
Crybb1	Mouse	cataract 17 multiple types		ISO	CRYBB1 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Crybb1	Mouse	cataract 17 multiple types		ISO	CRYBB1 (Homo sapiens)	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Crybb1	Mouse	1,2-dimethylhydrazine	decreases expression	EXP		6480464	1 and 2-Dimethylhydrazine results in decreased expression of CRYBB1 mRNA	CTD	PMID:22206623
Crybb1	Mouse	2,2',4,4'-Tetrabromodiphenyl ether	increases expression	ISO	CRYBB1 (Homo sapiens)	6480464	2 more ...	CTD	PMID:23146750
Crybb1	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of CRYBB1 mRNA	CTD	PMID:21570461
Crybb1	Mouse	2-palmitoylglycerol	increases expression	ISO	CRYBB1 (Homo sapiens)	6480464	2-palmitoylglycerol results in increased expression of CRYBB1 mRNA	CTD	PMID:37199045
Crybb1	Mouse	4,4'-sulfonyldiphenol	decreases expression	EXP		6480464	bisphenol S results in decreased expression of CRYBB1 mRNA	CTD	PMID:30951980
Crybb1	Mouse	4,4'-sulfonyldiphenol	affects methylation	EXP		6480464	bisphenol S affects the methylation of CRYBB1 gene	CTD	PMID:31683443
Crybb1	Mouse	acrylamide	decreases expression	ISO	Crybb1 (Rattus norvegicus)	6480464	Acrylamide results in decreased expression of CRYBB1 mRNA	CTD	PMID:28959563
Crybb1	Mouse	aflatoxin B1	increases methylation	ISO	CRYBB1 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of CRYBB1 gene and Aflatoxin B1 results in increased methylation of CRYBB1 intron	CTD	PMID:27153756 and PMID:30157460
Crybb1	Mouse	all-trans-retinoic acid	multiple interactions	EXP		6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of CRYBB1 mRNA	CTD	PMID:36189433
Crybb1	Mouse	amphotericin B	increases expression	ISO	CRYBB1 (Homo sapiens)	6480464	Amphotericin B analog results in increased expression of CRYBB1 mRNA	CTD	PMID:28534445
Crybb1	Mouse	arsane	affects methylation	ISO	CRYBB1 (Homo sapiens)	6480464	Arsenic affects the methylation of CRYBB1 gene	CTD	PMID:25304211
Crybb1	Mouse	arsenic atom	affects methylation	ISO	CRYBB1 (Homo sapiens)	6480464	Arsenic affects the methylation of CRYBB1 gene	CTD	PMID:25304211
Crybb1	Mouse	benzo[a]pyrene	increases methylation	ISO	CRYBB1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of CRYBB1 promoter	CTD	PMID:27901495
Crybb1	Mouse	bisphenol A	decreases expression	ISO	Crybb1 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of CRYBB1 mRNA	CTD	PMID:25181051 more ...
Crybb1	Mouse	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of CRYBB1 mRNA	CTD	PMID:30951980 and PMID:35598803
Crybb1	Mouse	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of CRYBB1 promoter	CTD	PMID:27312807
Crybb1	Mouse	bisphenol F	decreases expression	EXP		6480464	bisphenol F results in decreased expression of CRYBB1 mRNA	CTD	PMID:30951980
Crybb1	Mouse	C60 fullerene	decreases expression	ISO	Crybb1 (Rattus norvegicus)	6480464	fullerene C60 results in decreased expression of CRYBB1 mRNA	CTD	PMID:19167457
Crybb1	Mouse	carmustine	decreases expression	ISO	CRYBB1 (Homo sapiens)	6480464	Carmustine results in decreased expression of CRYBB1 mRNA	CTD	PMID:15980968
Crybb1	Mouse	chlordecone	increases expression	EXP		6480464	Chlordecone results in increased expression of CRYBB1 mRNA	CTD	PMID:33711761
Crybb1	Mouse	chlorpyrifos	increases expression	EXP		6480464	Chlorpyrifos results in increased expression of CRYBB1 mRNA	CTD	PMID:37019170
Crybb1	Mouse	Cuprizon	decreases expression	ISO	Crybb1 (Rattus norvegicus)	6480464	Cuprizone results in decreased expression of CRYBB1 mRNA	CTD	PMID:27523638
Crybb1	Mouse	ethylparaben	increases expression	ISO	CRYBB1 (Homo sapiens)	6480464	ethyl-p-hydroxybenzoate results in increased expression of CRYBB1 mRNA	CTD	PMID:37690743
Crybb1	Mouse	flavonoids	increases expression	ISO	Crybb1 (Rattus norvegicus)	6480464	Flavonoids results in increased expression of CRYBB1 mRNA	CTD	PMID:18035473
Crybb1	Mouse	mono(2-ethylhexyl) phthalate	multiple interactions	EXP		6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of CRYBB1 mRNA	CTD	PMID:36189433
Crybb1	Mouse	niclosamide	increases expression	ISO	CRYBB1 (Homo sapiens)	6480464	Niclosamide results in increased expression of CRYBB1 mRNA	CTD	PMID:36318118
Crybb1	Mouse	pregnenolone 16alpha-carbonitrile	increases expression	EXP		6480464	Pregnenolone Carbonitrile results in increased expression of CRYBB1 mRNA	CTD	PMID:22698814
Crybb1	Mouse	sodium dichromate	increases expression	ISO	Crybb1 (Rattus norvegicus)	6480464	sodium bichromate results in increased expression of CRYBB1 mRNA	CTD	PMID:12325037
Crybb1	Mouse	trichloroethene	decreases expression	ISO	Crybb1 (Rattus norvegicus)	6480464	Trichloroethylene results in decreased expression of CRYBB1 mRNA	CTD	PMID:33387578
Crybb1	Mouse	valproic acid	increases methylation	ISO	CRYBB1 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of CRYBB1 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Crybb1	Mouse	eye development	involved_in	IEA	ARBA:ARBA00027551	2290270		UniProt	GO_REF:0000117
Crybb1	Mouse	lens development in camera-type eye	involved_in	IBA	PANTHER:PTN001721602 more ...	2290270		GO_Central	GO_REF:0000033
Crybb1	Mouse	visual perception	involved_in	IBA	PANTHER:PTN001721602 more ...	2290270		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Crybb1	Mouse	protein binding	enables	IPI	UniProtKB:P23928	2290270	PMID:19071118	IntAct	PMID:19071118
Crybb1	Mouse	structural constituent of eye lens	enables	ISO	Crybb1 (Rattus norvegicus)	2290270		GO_Central	GO_REF:0000096
Crybb1	Mouse	structural constituent of eye lens	enables	IBA	PANTHER:PTN001721602 more ...	2290270		GO_Central	GO_REF:0000033
Crybb1	Mouse	structural constituent of eye lens	enables	IEA	UniProtKB:P02523 and ensembl:ENSRNOP00000064741	2290270		Ensembl	GO_REF:0000107
Crybb1	Mouse	structural constituent of eye lens		ISO	Crybb1 (Rattus norvegicus)	9068941		RGD	PMID:11773034 and REF_RGD_ID:727978

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Crybb1	Mouse	increased total retina thickness		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	A nonsense mutation in CRYBB1 associated with autosomal dominant cataract linked to human chromosome 22q.	Mackay DS, etal., Am J Hum Genet 2002 Nov;71(5):1216-21.
3.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
4.	MGDs mouse GO annotations	MGD data from the GO Consortium
5.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8575764	PMID:8817455	PMID:8889548	PMID:8954727	PMID:9070650	PMID:9693140	PMID:10080188	PMID:10349636	PMID:10595510	PMID:10603348	PMID:11042159	PMID:11076861
PMID:11309658	PMID:11406268	PMID:11714668	PMID:11836498	PMID:11850820	PMID:12477932	PMID:12506076	PMID:14610273	PMID:15452066	PMID:15593327	PMID:16141072	PMID:16141073
PMID:18823128	PMID:19071118	PMID:19623612	PMID:19746987	PMID:20105280	PMID:21873635	PMID:21998302	PMID:23426374	PMID:24249052	PMID:24753151	PMID:25530357	PMID:25792222
PMID:26719333	PMID:27326458	PMID:28384713	PMID:28552735	PMID:30646012	PMID:30683901	PMID:32325033	PMID:36293380	PMID:36791722	PMID:38355793

Crybb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	112,403,686 - 112,417,451 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	112,403,681 - 112,417,451 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	112,254,563 - 112,269,585 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	112,255,815 - 112,269,585 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	112,684,841 - 112,698,602 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	112,496,124 - 112,509,885 (+)	NCBI		MGSCv36	mm8
Celera	5	109,375,405 - 109,389,151 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	54.63	NCBI

CRYBB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	26,599,278 - 26,618,027 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	26,599,278 - 26,618,027 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	26,995,242 - 27,013,991 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	25,325,362 - 25,343,991 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	25,319,915 - 25,338,545	NCBI
Celera	22	10,799,161 - 10,817,792 (-)	NCBI		Celera
Cytogenetic Map	22	q12.1	ENTREZGENE
HuRef	22	9,942,881 - 9,961,511 (-)	NCBI		HuRef
CHM1_1	22	26,954,881 - 26,973,527 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	27,061,628 - 27,080,697 (-)	NCBI		T2T-CHM13v2.0

Crybb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	50,030,146 - 50,043,756 (-)	NCBI		GRCr8
mRatBN7.2	12	44,369,734 - 44,383,344 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	44,369,735 - 44,383,344 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	45,538,591 - 45,552,345 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	46,149,005 - 46,162,615 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	45,209,536 - 45,223,146 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	50,390,939 - 50,404,550 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	50,390,940 - 50,404,550 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	52,147,268 - 52,160,879 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	12	45,952,784 - 45,966,534 (-)	NCBI		Celera
RH 3.4 Map	12	776.72	RGD
Cytogenetic Map	12	q16	NCBI

Crybb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	1,165,048 - 1,180,826 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	1,165,048 - 1,180,826 (-)	NCBI	ChiLan1.0	ChiLan1.0

CRYBB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	36,604,824 - 36,623,396 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	39,303,287 - 39,321,857 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	7,661,085 - 7,679,640 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	25,383,681 - 25,402,158 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	25,383,681 - 25,402,158 (-)	Ensembl	panpan1.1		panPan2

CRYBB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	20,258,873 - 20,269,647 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	20,258,877 - 20,287,217 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	20,122,587 - 20,133,372 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	20,622,023 - 20,632,822 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	20,622,027 - 20,650,377 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	20,343,574 - 20,354,371 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	20,594,199 - 20,605,216 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	20,664,547 - 20,675,365 (-)	NCBI		UU_Cfam_GSD_1.0

Crybb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	114,660,332 - 114,676,677 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936657	1,193,474 - 1,210,443 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936657	1,194,030 - 1,210,345 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CRYBB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	44,194,199 - 44,208,154 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	44,194,268 - 44,206,057 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	47,074,156 - 47,085,979 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CRYBB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	9,500,341 - 9,517,178 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	9,500,431 - 9,515,068 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	116,585,561 - 116,602,261 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Crybb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	3,125,168 - 3,137,576 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	3,125,168 - 3,137,576 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Crybb1
734 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	738
Count of miRNA genes:	334
Interacting mature miRNAs:	353
Transcripts:	ENSMUST00000031286, ENSMUST00000112375, ENSMUST00000131673
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10045978	Tir10_m	trypanosome infection response 10 (mouse)			Not determined		5	98019649	114021986	Mouse
1301399	Cpfd3_m	cerebellum pattern fissures (mouse)			Not determined		5	87386871	121387065	Mouse
25314310	Syncl4_m	synaptonemal complex length 4 (mouse)					5	103047866	115538059	Mouse
1301524	Lmb2_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		5	37581488	112465722	Mouse
25314315	Mlh1fc4_m	MLH1 foci count 4 (mouse)					5	74460661	132528839	Mouse
1357725	Eae39_m	experimental allergic encephalomyelitis 39 (mouse)			Not determined		5	89418876	118864028	Mouse
14746986	Manh58_m	mandible shape 58 (mouse)					5	102446283	136446283	Mouse
25314317	Sccor3_m	synaptonemal complex length to mean MLH1 count ratio 3 (mouse)					5	104347866	114738061	Mouse
1300993	Hycdc_m	hypercapnic duty cycle (mouse)			Not determined		5	90561006	124561151	Mouse
1301126	Bwem1_m	body weight day 30 males 1 (mouse)			Not determined		5	87386871	121387065	Mouse
1300659	Pcd8ts1_m	p-glycoprotein positive CD8 T cell subset 1 (mouse)			Not determined		5	97021753	131021986	Mouse
1301042	Elmaz1_m	elevated maze behavior 1 (mouse)			Not determined		5	98019649	116876624	Mouse
1300913	Bwefm_m	body weight females and males day 10 (mouse)			Not determined		5	109439348	143439459	Mouse
10402486	Dipa1_m	drug induced psychomotor activation 1 (mouse)			Not determined		5	95465549	129465722	Mouse
1357886	Diht_m	dopamine-induced hypothermia (mouse)			Not determined		5	104498738	115101540	Mouse
10043958	Chldq12_m	cholesterol and HDL QTL 12 (mouse)			Not determined		5	87386871	121387065	Mouse
26884395	Humsd2_m	humerus midshaft diameter 2, 10 week (mouse)					5	70057343	132528839	Mouse
10412202	Bbaa26_m	B.burgdorferi-associated arthritis 26 (mouse)			Not determined		5	104583688	138555455	Mouse
1301543	Hypch_m	hypercholesterolemia (mouse)			Not determined		5	109238624	139118905	Mouse
12904945	Tammq2_m	tibialis anterior muscle mass QTL 2 (mouse)					5	100665965	134665965	Mouse
4142473	Chlq11_m	circulating hormone level QTL 11 (mouse)			Not determined		5	107906299	141906412	Mouse
1301419	Cypr3_m	cytokine production 3 (mouse)			Not determined		5	81019649	115019803	Mouse
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
12904959	Smmq1_m	soleus muscle mass QTL 1 (mouse)					5	100665965	134665965	Mouse
10412197	Bbaa25_m	B.burgdorferi-associated arthritis 25 (mouse)			Not determined		5	109167240	143167381	Mouse
13506928	Recrq8_m	recombination rate in male meiosis QTL 8 (mouse)					5	74460661	132528839	Mouse
27226719	Tibw6_m	tibia width 6, proximal, 16 week (mouse)					5	72857343	139985755	Mouse
10401246	Bglu13_m	blood glucose level 13 (mouse)			Not determined		5	79539640	113539786	Mouse
1301457	Cfsw2_m	cystic fibrosis survival to weaning 2 (mouse)			Not determined		5	90561006	124561151	Mouse
10401245	Bglu18_m	blood glucose level 18 (mouse)			Not determined		5	82838468	116838597	Mouse
1301974	Chab7_m	cholesterol absorption 7 (mouse)			Not determined		5	95233214	129233330	Mouse
11528550	Sluc33_m	susceptibility to lung cancer 33 (mouse)					5	104386871	120711986	Mouse
4142064	Tmc1m4_m	Tmc1 modifier 4 (mouse)			Not determined		5	54500177	127001072	Mouse
10412239	Alpq7_m	alcohol preference QTL 7 (mouse)			Not determined		5	104705939	138705939	Mouse
1300801	Drb2_m	dopamine receptor binding 2 (mouse)			Not determined		5	87386871	121387065	Mouse
9587780	Afw16_m	abdominal fat weight QTL 16 (mouse)			Not determined		5	92830166	126830285	Mouse
1357644	Egrd1_m	early growth rate, direct effect 1 (mouse)			Not determined		5	95434580	129434786	Mouse
1357901	Mdmsc2_m	modifier of muscularity 2 (mouse)			Not determined		5	107561006	112434786	Mouse
12859290	Criq2_m	Citrobacter rodentium infection QTL 2 (mouse)					5	101332579	135332579	Mouse
1300940	Actd3_m	activity-distance traveled 3 (mouse)			Not determined		5	96320385	130320533	Mouse
10755524	Mono1_m	monocyte differential 1 (mouse)					5	80849259	114849259	Mouse
1301362	Prnr1_m	prion resistance 1 (mouse)			Not determined		5	89418876	146787935	Mouse
1558774	Lith17_m	lithogenic gene 17 (mouse)			Not determined		5	95465549	129465722	Mouse
1357431	Cia27_m	collagen induced arthritis 27 (mouse)			Not determined		5	75315348	120018629	Mouse
1301877	Bbaa3_m	B.burgdorferi-associated arthritis 3 (mouse)			Not determined		5	99455285	112465722	Mouse
1301624	Aevm2_m	autoimmune extremity vasculitis in MRL mice 2 (mouse)			Not determined		5	101863832	135864028	Mouse
10043890	Trigq4_m	triglyceride QTL 4 (mouse)			Not determined		5	107906299	141906412	Mouse
4141652	Mrdq2_m	modifier of retinal degeneration QTL 2 (mouse)			Not determined			110253106	118093673	Mouse
4141139	Hmtb4_m	hemostasis and thrombosis rebleeding time 4 (mouse)			Not determined			108762509	126882944	Mouse
11532736	Sluc33b_m	susceptibility to lung cancer 33b (mouse)					5	102945037	136945196	Mouse
4141519	Hmtb5_m	hemostasis and thrombosis bleeding time 5 (mouse)			Not determined			99949422	126882944	Mouse
1301858	Smdq1_m	segregation of mitochondrial DNA QTL 1 (mouse)			Not determined		5	97021753	131021986	Mouse
11049562	Lmr24f_m	leishmaniasis resistance 24f (mouse)					5	90320962	124321041	Mouse
13464251	Ahl21_m	age related hearing loss, early onset 21 (mouse)					5	109167240	143167381	Mouse
13464244	Ahl19_m	age related hearing loss, early onset 19 (mouse)					5	95465549	129465722	Mouse
1300968	Skts4_m	skin tumor susceptibility 4 (mouse)			Not determined		5	89418876	124238239	Mouse
13464241	Ahl18_m	age related hearing loss, early onset 18 (mouse)					5	87386871	121387065	Mouse
13464243	Ahl20_m	age related hearing loss, early onset 20 (mouse)					5	107906299	141906412	Mouse
13464242	Ahl17_m	age related hearing loss, early onset 17 (mouse)					5	82838468	116838597	Mouse

Crybb1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	5	F	UniSTS
cM Map	5	59.0	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001312893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001312894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001312895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_023695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006534754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF106853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF106854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK014012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK053869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK076443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC029012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA452040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO046108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX767595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX767799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX767857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000031286 ⟹ ENSMUSP00000031286

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,403,681 - 112,417,451 (+)	Ensembl
GRCm38.p6 Ensembl	5	112,255,815 - 112,269,585 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000112375 ⟹ ENSMUSP00000107994

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,403,740 - 112,417,368 (+)	Ensembl
GRCm38.p6 Ensembl	5	112,255,874 - 112,269,502 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000131673 ⟹ ENSMUSP00000118399

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,403,711 - 112,417,323 (+)	Ensembl
GRCm38.p6 Ensembl	5	112,255,845 - 112,269,457 (+)	Ensembl

RefSeq Acc Id:

NM_001312893 ⟹ NP_001299822

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	112,403,686 - 112,417,451 (+)	NCBI
GRCm38	5	112,255,820 - 112,269,585 (+)	NCBI

Sequence:

show sequence

CACAGCACCCGCCTGTCCACCAATACAGGAACCATGTCCCAGGCTGCCAAGGCTTCAGCCACCACAGCGGTGAACCCAGGGCCTGATGGCAAGGGAAAAGGGGCCCCATCCACAGGGCCAGCCCCTGC
CCCTGGCCCCACTCCTGTCCCAGCTTCTGTGCCCAGGCCCGCTGCCAAAGTAGGGGACCTGCCTCCTGGGAGCTACAGGCTGATCGTCTTCGAGCAGGAAAACTTTCAGGGCCGCCGGGTGGAATTCT
CGGGGGAGTGCCTGAATCTGGGGGACCGTGGCTTCGACAGAGTGCGCAGCCTGATCGTCGTCTCGGGACCCTGGGTGGCCTTTGAGCAATCTGCCTTCCGTGGAGAGATGTTTGTCCTGGAGAAGGGC
GAGTACCCACGCTGGGACACCTGGACCAGCAGTTACCGCAGTGACCGGCTCATGTCCTTCCGGCCCATCAGGATGGATTCCCAGGAACATAAGATCTGCCTGTTCGAAGGGGCCAACTTCAAGGGCAA
CACCATGGAGATCCAAGAGGATGATGTGCCCAGCCTCTGGGTTTATGGCTTCTGTGACCGTGTGGGCAGCATAACCGTCTCTGGTGGCACATGGGTCGGCTACCAGTACCCAGGTTACCGTGGCTACC
AGTATCTGCTGGAGCCTGGCGACTTCCGGCACTGGAACGAGTGGGGCGCCTTCCAGCCGCAGATGCAGGCTGTGCGGCGCCTGCGGGACCGCCAGTGGCACCAAGAGGGCTGCTTCCCGGTGCTGACA
GCCGAGCCCCCCAAGTGAGACAAGCTCCCGGCCTCCCTTCTACAGCCCGCCCTGCCTCACGTCCCATCTTCCCCTACTAATAAAGTTCTTATAGCCGATACTAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001312894 ⟹ NP_001299823

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	112,403,686 - 112,417,451 (+)	NCBI
GRCm38	5	112,255,820 - 112,269,585 (+)	NCBI

Sequence:

show sequence

CACAGCACCCGCCTGTCCACCAATACAGGTAAGAGGGGACTGCCACACCACCAGAGAACTGAGAGGAGGACAGAAACAGAGGTGGGGCAGCTGACGAAGACAGAGCCAGGCTGAAAGCCAAACCCAGA
AAGCACCAGGAACCATGTCCCAGGCTGCCAAGGCTTCAGCCACCACAGCGGTGAACCCAGGGCCTGATGGCAAGGGAAAAGGGGCCCCATCCACAGGGCCAGCCCCTGCCCCTGGCCCCACTCCTGTC
CCAGCTTCTGTGCCCAGGCCCGCTGCCAAAGTAGGGGACCTGCCTCCTGGGAGCTACAGGCTGATCGTCTTCGAGCAGGAAAACTTTCAGGGCCGCCGGGTGGAATTCTCGGGGGAGTGCCTGAATCT
GGGGGACCGTGGCTTCGACAGAGTGCGCAGCCTGATCGTCGTCTCGGGACCCTGGGTGGCCTTTGAGCAATCTGCCTTCCGTGGAGAGATGTTTGTCCTGGAGAAGGGCGAGTACCCACGCTGGGACA
CCTGGACCAGCAGTTACCGCAGTGACCGGCTCATGTCCTTCCGGCCCATCAGGATGGATTCCCAGGAACATAAGATCTGCCTGTTCGAAGGGGCCAACTTCAAGGGCAACACCATGGAGATCCAAGAG
GATGATGTGCCCAGCCTCTGGGTTTATGGCTTCTGTGACCGTGTGGGCAGCATAACCGTCTCTGGTGGCACATGGGTCGGCTACCAGTACCCAGGTTACCGTGGCTACCAGTATCTGCTGGAGCCTGG
CGACTTCCGGCACTGGAACGAGTGGGGCGCCTTCCAGCCGCAGATGCAGGCTGTGCGGCGCCTGCGGGACCGCCAGTGGCACCAAGAGGGCTGCTTCCCGGTGCTGACAGCCGAGCCCCCCAAGTGAG
ACAAGCTCCCGGCCTCCCTTCTACAGCCCGCCCTGCCTCACGTCCCATCTTCCCCTACTAATAAAGTTCTTATAGCCGATACTAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001312895 ⟹ NP_001299824

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	112,403,686 - 112,417,451 (+)	NCBI
GRCm38	5	112,255,820 - 112,269,585 (+)	NCBI

Sequence:

show sequence

CACAGCACCCGCCTGTCCACCAATACAGGTAAGAGGGGACTGCCACACCACCAGAGAACTGAGAGGAGGACAGAAACAGAGCACCAGGAACCATGTCCCAGGCTGCCAAGGCTTCAGCCACCACAGCG
GTGAACCCAGGGCCTGATGGCAAGGGAAAAGGGGCCCCATCCACAGGGCCAGCCCCTGCCCCTGGCCCCACTCCTGTCCCAGCTTCTGTGCCCAGGCCCGCTGCCAAAGTAGGGGACCTGCCTCCTGG
GAGCTACAGGCTGATCGTCTTCGAGCAGGAAAACTTTCAGGGCCGCCGGGTGGAATTCTCGGGGGAGTGCCTGAATCTGGGGGACCGTGGCTTCGACAGAGTGCGCAGCCTGATCGTCGTCTCGGGAC
CCTGGGTGGCCTTTGAGCAATCTGCCTTCCGTGGAGAGATGTTTGTCCTGGAGAAGGGCGAGTACCCACGCTGGGACACCTGGACCAGCAGTTACCGCAGTGACCGGCTCATGTCCTTCCGGCCCATC
AGGATGGATTCCCAGGAACATAAGATCTGCCTGTTCGAAGGGGCCAACTTCAAGGGCAACACCATGGAGATCCAAGAGGATGATGTGCCCAGCCTCTGGGTTTATGGCTTCTGTGACCGTGTGGGCAG
CATAACCGTCTCTGGTGGCACATGGGTCGGCTACCAGTACCCAGGTTACCGTGGCTACCAGTATCTGCTGGAGCCTGGCGACTTCCGGCACTGGAACGAGTGGGGCGCCTTCCAGCCGCAGATGCAGG
CTGTGCGGCGCCTGCGGGACCGCCAGTGGCACCAAGAGGGCTGCTTCCCGGTGCTGACAGCCGAGCCCCCCAAGTGAGACAAGCTCCCGGCCTCCCTTCTACAGCCCGCCCTGCCTCACGTCCCATCT
TCCCCTACTAATAAAGTTCTTATAGCCGATACTAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_023695 ⟹ NP_076184

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	112,403,686 - 112,417,451 (+)	NCBI
GRCm38	5	112,255,820 - 112,269,585 (+)	NCBI
MGSCv37	5	112,684,841 - 112,698,602 (+)	RGD
Celera	5	109,375,405 - 109,389,151 (+)	RGD
cM Map	5		ENTREZGENE

Sequence:

show sequence

CACAGCACCCGCCTGTCCACCAATACAGCACCAGGAACCATGTCCCAGGCTGCCAAGGCTTCAG
CCACCACAGCGGTGAACCCAGGGCCTGATGGCAAGGGAAAAGGGGCCCCATCCACAGGGCCAGCCCCTGCCCCTGGCCCCACTCCTGTCCCAGCTTCTGTGCCCAGGCCCGCTGCCAAAGTAGGGGAC
CTGCCTCCTGGGAGCTACAGGCTGATCGTCTTCGAGCAGGAAAACTTTCAGGGCCGCCGGGTGGAATTCTCGGGGGAGTGCCTGAATCTGGGGGACCGTGGCTTCGACAGAGTGCGCAGCCTGATCGT
CGTCTCGGGACCCTGGGTGGCCTTTGAGCAATCTGCCTTCCGTGGAGAGATGTTTGTCCTGGAGAAGGGCGAGTACCCACGCTGGGACACCTGGACCAGCAGTTACCGCAGTGACCGGCTCATGTCCT
TCCGGCCCATCAGGATGGATTCCCAGGAACATAAGATCTGCCTGTTCGAAGGGGCCAACTTCAAGGGCAACACCATGGAGATCCAAGAGGATGATGTGCCCAGCCTCTGGGTTTATGGCTTCTGTGAC
CGTGTGGGCAGCATAACCGTCTCTGGTGGCACATGGGTCGGCTACCAGTACCCAGGTTACCGTGGCTACCAGTATCTGCTGGAGCCTGGCGACTTCCGGCACTGGAACGAGTGGGGCGCCTTCCAGCC
GCAGATGCAGGCTGTGCGGCGCCTGCGGGACCGCCAGTGGCACCAAGAGGGCTGCTTCCCGGTGCTGACAGCCGAGCCCCCCAAGTGAGACAAGCTCCCGGCCTCCCTTCTACAGCCCGCCCTGCCTC
ACGTCCCATCTTCCCCTACTAATAAAGTTCTTATAGCCGATACTAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006534754 ⟹ XP_006534817

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	112,404,894 - 112,417,451 (+)	NCBI
GRCm38	5	112,256,954 - 112,269,582 (+)	NCBI

Sequence:

show sequence

AGAGCAGGGTGGAACCCAGAGCTTCAGCCCTGTCTCCCAGGAAGAGCTGATGGCTGTGGGGGAG
TCCATAGACATGGCTGAGAAGCACATGGCACCAGGAACCATGTCCCAGGCTGCCAAGGCTTCAGCCACCACAGCGGTGAACCCAGGGCCTGATGGCAAGGGAAAAGGGGCCCCATCCACAGGGCCAGC
CCCTGCCCCTGGCCCCACTCCTGTCCCAGCTTCTGTGCCCAGGCCCGCTGCCAAAGTAGGGGACCTGCCTCCTGGGAGCTACAGGCTGATCGTCTTCGAGCAGGAAAACTTTCAGGGCCGCCGGGTGG
AATTCTCGGGGGAGTGCCTGAATCTGGGGGACCGTGGCTTCGACAGAGTGCGCAGCCTGATCGTCGTCTCGGGACCCTGGGTGGCCTTTGAGCAATCTGCCTTCCGTGGAGAGATGTTTGTCCTGGAG
AAGGGCGAGTACCCACGCTGGGACACCTGGACCAGCAGTTACCGCAGTGACCGGCTCATGTCCTTCCGGCCCATCAGGATGGATTCCCAGGAACATAAGATCTGCCTGTTCGAAGGGGCCAACTTCAA
GGGCAACACCATGGAGATCCAAGAGGATGATGTGCCCAGCCTCTGGGTTTATGGCTTCTGTGACCGTGTGGGCAGCATAACCGTCTCTGGTGGCACATGGGTCGGCTACCAGTACCCAGGTTACCGTG
GCTACCAGTATCTGCTGGAGCCTGGCGACTTCCGGCACTGGAACGAGTGGGGCGCCTTCCAGCCGCAGATGCAGGCTGTGCGGCGCCTGCGGGACCGCCAGTGGCACCAAGAGGGCTGCTTCCCGGTG
CTGACAGCCGAGCCCCCCAAGTGAGACAAGCTCCCGGCCTCCCTTCTACAGCCCGCCCTGCCTCACGTCCCATCTTCCCCTACTAATAAAGTTCTTATAGCCGATACTA

hide sequence


Protein RefSeqs	NP_001299822	(Get FASTA)	NCBI Sequence Viewer
	NP_001299823	(Get FASTA)	NCBI Sequence Viewer
	NP_001299824	(Get FASTA)	NCBI Sequence Viewer
	NP_076184	(Get FASTA)	NCBI Sequence Viewer
	XP_006534817	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD42048	(Get FASTA)	NCBI Sequence Viewer
	AAD52709	(Get FASTA)	NCBI Sequence Viewer
	AAH29012	(Get FASTA)	NCBI Sequence Viewer
	BAB29113	(Get FASTA)	NCBI Sequence Viewer
	BAC35565	(Get FASTA)	NCBI Sequence Viewer
	EDL19979	(Get FASTA)	NCBI Sequence Viewer
	EDL19980	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000031286
	ENSMUSP00000031286.7
	ENSMUSP00000107994
	ENSMUSP00000107994.2
	ENSMUSP00000118399
GenBank Protein	Q9WVJ5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_076184 ⟸ NM_023695

- UniProtKB:

Q9WVJ5 (UniProtKB/Swiss-Prot), E9PYP8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSQAAKASATTAVNPGPDGKGKGAPSTGPAPAPGPTPVPASVPRPAAKVGDLPPGSYRLIVFEQENFQGRRVEFSGECLNLGDRGFDRVRSLIVVSGPWVAFEQSAFRGEMFVLEKGEYPRWDTWTSS
YRSDRLMSFRPIRMDSQEHKICLFEGANFKGNTMEIQEDDVPSLWVYGFCDRVGSITVSGGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQAVRRLRDRQWHQEGCFPVLTAEPPK

hide sequence

RefSeq Acc Id:	XP_006534817 ⟸ XM_006534754
- Peptide Label:	isoform X1
- UniProtKB:	E9PYP8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVGESIDMAEKHMAPGTMSQAAKASATTAVNPGPDGKGKGAPSTGPAPAPGPTPVPASVPRPAAKVGDLPPGSYRLIVFEQENFQGRRVEFSGECLNLGDRGFDRVRSLIVVSGPWVAFEQSAFRGE MFVLEKGEYPRWDTWTSSYRSDRLMSFRPIRMDSQEHKICLFEGANFKGNTMEIQEDDVPSLWVYGFCDRVGSITVSGGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQAVRRLRDRQWHQE GCFPVLTAEPPK hide sequence

RefSeq Acc Id:

NP_001299823 ⟸ NM_001312894

- UniProtKB:

Q9WVJ5 (UniProtKB/Swiss-Prot), E9PYP8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSQAAKASATTAVNPGPDGKGKGAPSTGPAPAPGPTPVPASVPRPAAKVGDLPPGSYRLIVFEQ
ENFQGRRVEFSGECLNLGDRGFDRVRSLIVVSGPWVAFEQSAFRGEMFVLEKGEYPRWDTWTSSYRSDRLMSFRPIRMDSQEHKICLFEGANFKGNTMEIQEDDVPSLWVYGFCDRVGSITVSGGTWV
GYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQAVRRLRDRQWHQEGCFPVLTAEPPK

hide sequence

RefSeq Acc Id:

NP_001299824 ⟸ NM_001312895

- UniProtKB:

Q9WVJ5 (UniProtKB/Swiss-Prot), E9PYP8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSQAAKASATTAVNPGPDGKGKGAPSTGPAPAPGPTPVPASVPRPAAKVGDLPPGSYRLIVFEQ
ENFQGRRVEFSGECLNLGDRGFDRVRSLIVVSGPWVAFEQSAFRGEMFVLEKGEYPRWDTWTSSYRSDRLMSFRPIRMDSQEHKICLFEGANFKGNTMEIQEDDVPSLWVYGFCDRVGSITVSGGTWV
GYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQAVRRLRDRQWHQEGCFPVLTAEPPK

hide sequence

RefSeq Acc Id:

NP_001299822 ⟸ NM_001312893

- UniProtKB:

Q9WVJ5 (UniProtKB/Swiss-Prot), E9PYP8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSQAAKASATTAVNPGPDGKGKGAPSTGPAPAPGPTPVPASVPRPAAKVGDLPPGSYRLIVFEQ
ENFQGRRVEFSGECLNLGDRGFDRVRSLIVVSGPWVAFEQSAFRGEMFVLEKGEYPRWDTWTSSYRSDRLMSFRPIRMDSQEHKICLFEGANFKGNTMEIQEDDVPSLWVYGFCDRVGSITVSGGTWV
GYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQAVRRLRDRQWHQEGCFPVLTAEPPK

hide sequence

Protein Domains

Beta/gamma crystallin 'Greek key'

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9WVJ5-F1-model_v2	AlphaFold	Q9WVJ5	1-250	view protein structure

RGD ID:

6887590

Promoter ID:

EPDNEW_M7246

Type:

multiple initiation site

Name:

Crybb1_1

Description:

Mus musculus crystallin, beta B1 , transcript variant 3, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	112,255,821 - 112,255,881	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000029343	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000031286	ENTREZGENE
	ENSMUST00000031286.13	UniProtKB/Swiss-Prot
	ENSMUST00000112375	ENTREZGENE
	ENSMUST00000112375.2	UniProtKB/Swiss-Prot
	ENSMUST00000131673	ENTREZGENE
Gene3D-CATH	Crystallins	UniProtKB/Swiss-Prot
InterPro	Beta/Gamma-Crystallin	UniProtKB/Swiss-Prot
	Beta/gamma_crystallin	UniProtKB/Swiss-Prot
	G_crystallin-like	UniProtKB/Swiss-Prot
KEGG Report	mmu:12960	UniProtKB/Swiss-Prot
MGD	MGI:104992	ENTREZGENE
NCBI Gene	12960	ENTREZGENE
PANTHER	BETA/GAMMA CRYSTALLIN	UniProtKB/Swiss-Prot
	PTHR11818:SF12	UniProtKB/Swiss-Prot
Pfam	Crystall	UniProtKB/Swiss-Prot
PhenoGen	Crybb1	PhenoGen
PRINTS	BGCRYSTALLIN	UniProtKB/Swiss-Prot
PROSITE	CRYSTALLIN_BETA_GAMMA	UniProtKB/Swiss-Prot
SMART	XTALbg	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49695	UniProtKB/Swiss-Prot
UniProt	CRBB1_MOUSE	UniProtKB/Swiss-Prot
	E9PYP8	ENTREZGENE, UniProtKB/TrEMBL
	Q8K106_MOUSE	UniProtKB/TrEMBL
	Q9WVJ5	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Mammalian Phenotype

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Mammalian Phenotype